STAT4

gene
On this page

Summary

STAT4 (signal transducer and activator of transcription 4, HGNC:11365) is a protein-coding gene on chromosome 2q32.2-q32.3, encoding Signal transducer and activator of transcription 4 (Q14765). Transcriptional regulator mainly expressed in hematopoietic cells that plays a critical role in cellular growth, differentiation and immune response.

The protein encoded by this gene is a member of the STAT family of transcription factors. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein is essential for mediating responses to IL12 in lymphocytes, and regulating the differentiation of T helper cells. Mutations in this gene may be associated with systemic lupus erythematosus and rheumatoid arthritis. Alternate splicing results in multiple transcript variants that encode the same protein.

Source: NCBI Gene 6775 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): disabling pansclerotic morphea of childhood (Strong, GenCC) — +1 more curated relationship
  • GWAS associations: 94
  • Clinical variants (ClinVar): 531 total — 1 pathogenic, 1 likely-pathogenic
  • Phenotypes (HPO): 193
  • Druggable target: yes
  • Transcription factor: yes — 33 downstream targets (CollecTRI)
  • MANE Select transcript: NM_003151

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:11365
Approved symbolSTAT4
Namesignal transducer and activator of transcription 4
Location2q32.2-q32.3
Locus typegene with protein product
StatusApproved
Ensembl geneENSG00000138378
Ensembl biotypeprotein_coding
OMIM600558
Entrez6775

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 14 protein_coding, 4 protein_coding_CDS_not_defined, 3 retained_intron, 2 nonsense_mediated_decay

ENST00000358470, ENST00000392320, ENST00000409995, ENST00000413064, ENST00000432798, ENST00000450994, ENST00000463951, ENST00000470708, ENST00000495326, ENST00000495849, ENST00000647167, ENST00000714286, ENST00000714287, ENST00000714288, ENST00000714335, ENST00000714336, ENST00000960212, ENST00000960213, ENST00000960214, ENST00000960215, ENST00000960216, ENST00000960217, ENST00000960218

RefSeq mRNA: 2 — MANE Select: NM_003151 NM_001243835, NM_003151

CCDS: CCDS2310

Canonical transcript exons

ENST00000392320 — 24 exons

ExonStartEnd
ENSE00001372547191029576191029866
ENSE00001616842191030972191031080
ENSE00001788358191031450191031516
ENSE00001845053191150947191150994
ENSE00003459083191054490191054534
ENSE00003481696191073098191073190
ENSE00003487965191033490191033626
ENSE00003497169191069693191069771
ENSE00003498179191032958191033149
ENSE00003516088191041065191041148
ENSE00003523522191034548191034597
ENSE00003543489191036164191036299
ENSE00003563758191148076191148204
ENSE00003581307191039199191039297
ENSE00003584777191062762191062920
ENSE00003591717191033911191034005
ENSE00003601043191061729191061821
ENSE00003603366191064807191064958
ENSE00003610045191058202191058219
ENSE00003640858191146613191146757
ENSE00003652296191066430191066515
ENSE00003684846191058018191058111
ENSE00003688547191058710191058769
ENSE00003788940191076227191076325

Expression profiles

Bgee: expression breadth ubiquitous, 201 present calls, max score 96.60.

FANTOM5 (CAGE): breadth broad, TPM avg 10.9745 / max 558.7582, expressed in 734 samples.

FANTOM5 promoters (10 alternative TSS)

Promoter IDTPM avgSamples expressed
329386.7085515
329393.1743477
329370.6096103
329360.253969
329350.087938
329310.074325
329300.03749
329410.01133
329400.00993
329420.00744

Top tissues by expression

281 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
granulocyteCL:000009496.60gold quality
spermCL:000001993.37gold quality
middle temporal gyrusUBERON:000277193.17gold quality
male germ cellCL:000001591.69gold quality
bloodUBERON:000017890.24gold quality
right atrium auricular regionUBERON:000663189.56gold quality
cardiac atriumUBERON:000208189.50gold quality
cardiac muscle of right atriumUBERON:000337988.85gold quality
left testisUBERON:000453388.26gold quality
right testisUBERON:000453488.23gold quality
pituitary glandUBERON:000000787.71gold quality
right frontal lobeUBERON:000281087.04gold quality
spleenUBERON:000210686.78gold quality
adenohypophysisUBERON:000219686.64gold quality
Brodmann (1909) area 9UBERON:001354086.52gold quality
testisUBERON:000047385.83gold quality
Brodmann (1909) area 10UBERON:001354185.77gold quality
lymph nodeUBERON:000002985.39gold quality
primary visual cortexUBERON:000243685.13gold quality
prefrontal cortexUBERON:000045185.10gold quality
right lobe of liverUBERON:000111484.86gold quality
Brodmann (1909) area 23UBERON:001355484.86gold quality
dorsolateral prefrontal cortexUBERON:000983484.51gold quality
frontal cortexUBERON:000187084.07gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047383.39gold quality
Brodmann (1909) area 46UBERON:000648383.03gold quality
bone marrow cellCL:000209283.02gold quality
neocortexUBERON:000195082.59gold quality
vermiform appendixUBERON:000115481.84gold quality
colonic epitheliumUBERON:000039781.53gold quality

Single-cell (SCXA)

Detected in 6 experiment(s), a significant marker in 6.

ExperimentMarker?Max mean expression
E-CURD-122yes29.69
E-MTAB-6678yes27.01
E-CURD-46yes20.91
E-MTAB-9067yes4.78
E-CURD-112yes3.41
E-ANND-3no0.00

Regulation

Is transcription factor: yes

Downstream targets (CollecTRI)

33 targets.

TargetRegulation
AKT1
CD4Activation
CD8AActivation
CREBBP
CSF2Activation
FATE1
FCGRT
HAND1
IFNA1
IFNGUnknown
IL10Activation
IL12B
IL12RB2Activation
IL13Unknown
IL17AUnknown
IL21Activation
IL2RAUnknown
IRF1Unknown
IRF4
LTARepression
MYCActivation
NOS2Activation
NOX1Unknown
NOX4Unknown
PIK3R1
PIM1Unknown
PRF1Activation
PRKCQ
S100A4Activation
SOCS3Repression

Upstream regulators (CollecTRI, top): CREB1, DNMT3A, GATA3, NFKB1, NFKB, PITX2, POU2F1, REL, RELA, SMAD3, SP1, STAT4, STAT6, TBX21

miRNA regulators (miRDB)

23 targeting STAT4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-318599.9968.121959
HSA-MIR-150-5P99.9966.691976
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-141-3P99.9472.792421
HSA-MIR-200A-3P99.9472.682420
HSA-MIR-335-3P99.9373.364958
HSA-MIR-320A-3P99.7769.732107
HSA-MIR-320B99.7769.732107
HSA-MIR-320C99.7769.732107
HSA-MIR-320D99.7769.732107
HSA-MIR-442999.7769.622111
HSA-MIR-498-5P99.7669.641807
HSA-MIR-29B-2-5P99.6768.981726
HSA-MIR-6757-3P99.6366.881089
HSA-MIR-205399.5769.151635
HSA-MIR-516A-3P99.4667.961378
HSA-MIR-516B-3P99.4667.961378
HSA-MIR-7162-5P99.4668.081368
HSA-MIR-302A-5P99.3968.211913
HSA-MIR-10522-5P99.2668.502087
HSA-MIR-2115-5P98.6668.071191
HSA-MIR-4704-3P98.2869.331300

Literature-anchored findings (GeneRIF, showing 40)

  • STAT4 regulates IL-12-induced expression of the perforin gene in NK cells (PMID:12372421)
  • Active STAT4, essential for IL-12-mediated Th1 differentiation, is readily detectable in biopsies from Peyer’s patches and ileal mucosa, and STAT4-DNA binding activity is demonstrable by electrophoretic mobility-shift assay of lamina propria lymphocytes. (PMID:12496413)
  • STAT4 is constitutively activated in Crohn’s patients but not in healthy volunteers (PMID:12615922)
  • STAT4 is repressed by PIASx (PMID:12716907)
  • requires the N-terminal domain for efficient phosphorylation (PMID:12805384)
  • STAT4 signaling in human vascular endothelial cells is activated by interferon alpha but not by IL-12 (PMID:15087447)
  • The STAT4 is transactivated by Ikaros (Ik) and Ik binding elements were revealed in its promoter. (PMID:16081070)
  • identify and characterize the transcriptional regulatory elements in the promoter region of the human STAT4 gene. (PMID:16301617)
  • these results indicate that STAT-4 can be finely tuned along with DC maturation through NF-kappaB activation and that its induction may be involved in preparing the DC to be receptive to the cytokine environment present in lymphoid organs. (PMID:17046972)
  • IFNAR2 cytoplasmic domain serves to link STAT4 to the IFNAR as a pre-assembled complex that facilitates cytokine-driven STAT4 activation. (PMID:17095088)
  • STAT-4 T90089C polymorphism might be the genetic factor for the risk of asthma in the Chinese population (PMID:17532201)
  • A haplotype of STAT4 is associated with increased risk for both rheumatoid arthritis and systemic lupus erythematosus, suggesting a shared pathway for these illnesses. (PMID:17804842)
  • A haplotype of the STAT4 gene shows consistent association with rheumatoid arthritis susceptibility across Whites and Asians. (PMID:17932559)
  • Single nucleotide polymorphisms in the STAT4 gene are associated with primary Sjogren’s syndrome. (PMID:18273036)
  • STAT4 but not TRAF1/C5 variants influence the risk of developing rheumatoid arthritis and systemic lupus erythematosus in Colombians. (PMID:18432273)
  • STAT4 and the TRAF1/C5 loci are associated with rheumatoid arthritis susceptibility. (PMID:18434327)
  • STAT4 contributes to the phenotypic heterogeneity of systemic lupus erythematosus, predisposing specifically to more severe disease. (PMID:18516230)
  • We conclude that STAT4 is associated with RA and SLE in the Japanese. (PMID:18576330)
  • Our findings indicate an association between the STAT4 polymorphism rs7574865 and RA in 3 different populations, from Spain, Sweden, and The Netherlands, thereby confirming previous data. (PMID:18576336)
  • The SNP rs7582694 in STAT4 displayed a increased risk of systemic lupus erythematosus with two independent risk alleles of the IRF5. (PMID:18579578)
  • study concludes that mutant alleles or genotypes of both TRAF1 and STAT4 polymorphisms are associated with the development of Rheumatoid arthritis in our population. (PMID:18625278)
  • in a genetically homogeneous population, the STAT4 rs7574865 G/T polymorphism, which has been shown to be associated with several autoimmune diseases, is associated with susceptibility to type 1 diabetes (T1D) (PMID:18703106)
  • The association of STAT4 polymorphism rs7574865 with RA was validated in patients of Spanish origin and described for the first time in both clinical forms of inflammatory bowel disease, Crohn’s disease, ulcerative colitis and type 1 diabetes mellitus. (PMID:18759272)
  • T helper (Th) type 1 cells expressing transgenic STAT4 beta (an isoform lacking the C-terminal transactivation domain) secrete significantly more tumor necrosis factor-alpha upon T cell receptor stimulation than transgenic STAT4alpha-expressing Th1 cells. (PMID:18802110)
  • The same STAT4 risk allele is associated with SLE in Caucasian and Japanese populations. (PMID:18803832)
  • Data confirm STAT4 as a susceptibility gene for systemic lupus erythematosus and suggest the presence of at least two functional variants affecting levels of STAT4 and also indicate that the genes STAT4 and IRF5 act additively to increase the risk for SLE (PMID:19019891)
  • Additive effects of the major risk alleles of IRF5 and STAT4 in primary Sjogren’s syndrome are reported. (PMID:19092842)
  • The risk allele of STAT4 is associated with increased sensitivity to IFN-alpha signaling in systemic lupus erythematosus. (PMID:19109131)
  • The age at diagnosis is lowest in the patients carrying the homozygotes of a minor allele, middle in the heterozygotes, and highest in the homozygotes of a major allele, suggesting the dosage effects of risk alleles on the age of onset of disease. (PMID:19120275)
  • Our data confirmed association of STAT4 (rs7574865, odds ratio (OR) =1.71, P=3.55 x 10(-23)) and BLK (rs13277113, OR=0.77, P=1.34 x 10(-5)) with SLE (PMID:19225526)
  • Genetic polymorphisms in the Jak-Stat signaling pathway are associated with an increased risk of new cardiovascular events in incident dialysis patients. (PMID:19282076)
  • STAT4 influences the genetic predisposition to systemic sclerosis phenotype. (PMID:19286670)
  • Our results do not support a major role of the STAT4 rs7574865 gene polymorphism in susceptibility to or clinical manifestations of giant cell arteritis. (PMID:19332627)
  • STAT4 is likely to be a crucial component in systemic lupus erythematosus pathogenesis in multiple racial groups (PMID:19333953)
  • STAT4 is required for optimal human Th1 lineage development (PMID:19359411)
  • Focusing on how STAT4 work in concert with other transcription factors will hopefully provide a better mechanistic understanding of the pathogenesis of various autoimmune diseases. (PMID:19362457)
  • STAT4 is not associated with type 2 diabetes in the genetically homogeneous population of Crete. (PMID:19371230)
  • Our results replicate and firmly establish the association of STAT4 and CTLA4 with RA and provide highly suggestive evidence for IL2/IL21 loci as a risk factor for RA. (PMID:19404967)
  • The results of this meta-analysis demonstrated that STAT4 rs7574865 single nucleotide polymorphism is significantly associated with rheumatoid arthritis and systemic lupus erythematosus. (PMID:19479340)
  • single nucleotide polymorphism is associated with psoriasis in population of Crete, Greece (PMID:19500629)

Cross-species orthologs

4 orthologs

OrganismSymbolGene ID
danio_reriostat4ENSDARG00000028731
mus_musculusStat4ENSMUSG00000062939
caenorhabditis_elegansWBGENE00010251
caenorhabditis_elegansWBGENE00013111

Paralogs (6): STAT1 (ENSG00000115415), STAT5A (ENSG00000126561), STAT6 (ENSG00000166888), STAT3 (ENSG00000168610), STAT2 (ENSG00000170581), STAT5B (ENSG00000173757)

Protein

Protein identifiers

Signal transducer and activator of transcription 4Q14765 (reviewed: Q14765)

All UniProt accessions (8): Q14765, A0A2R8Y693, A0AAQ5BHR1, A0AAQ5BHW3, C9JFG0, C9JM11, E9PBE2, E9PG69

UniProt curated annotations — full annotation on UniProt →

Function. Transcriptional regulator mainly expressed in hematopoietic cells that plays a critical role in cellular growth, differentiation and immune response. Plays a key role in the differentiation of T-helper 1 cells and the production of interferon-gamma. Also participates in multiple neutrophil functions including chemotaxis and production of the neutrophil extracellular traps. After IL12 binding to its receptor IL12RB2, STAT4 interacts with the intracellular domain of IL12RB2 and becomes tyrosine phosphorylated. Phosphorylated STAT4 then homodimerizes and migrates to the nucleus where it can recognize STAT target sequences present in IL12 responsive genes. Although IL12 appears to be the predominant activating signal, STAT4 can also be phosphorylated and activated in response to IFN-gamma stimulation via JAK1 and TYK2 and in response to different interleukins including IL23, IL2 and IL35. Transcription activation of IFN-gamma gene is mediated by interaction with JUN that forms a complex that efficiently interacts with the AP-1-related sequence of the IFN-gamma promoter. In response to IFN-alpha/beta signaling, acts as a transcriptional repressor and suppresses IL5 and IL13 mRNA expression during response to T-cell receptor (TCR) activation.

Subunit / interactions. Forms a homodimer or a heterodimer with a related family member. Interacts with ARL2BP. The SH2 domain interacts, in vitro, with IL12RB2 via a short cytoplasmic domain. Interacts with STAT1. Interacts with JUN; this complex efficiently interacts with the AP-1-related sequence of the IFN-gamma.

Subcellular location. Cytoplasm. Nucleus.

Post-translational modifications. Acetylation at Lys-667 is required for JAK2-mediated phosphorylation and activation of STAT4. Tyrosine phosphorylated upon IL12 and IFN-alpha activation, but not by IFN-gamma in T-lymphocytes and NK cells. Serine phosphorylation is required for maximal transcriptional activity but not for DNA binding. Phosphorylation by MAP2K6 at Ser-721 is required for full transcriptional activity induced by IL12. However this serine phosphorylation is not required for cell proliferation although critical for IFN-gamma production.

Disease relevance. Systemic lupus erythematosus 11 (SLEB11) [MIM:612253] A chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. The disease is marked by a wide range of system dysfunctions, an elevated erythrocyte sedimentation rate, and the formation of LE cells in the blood or bone marrow. Disease susceptibility is associated with variants affecting the gene represented in this entry. Rheumatoid arthritis (RA) [MIM:180300] An inflammatory disease with autoimmune features and a complex genetic component. It primarily affects the joints and is characterized by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. Disease susceptibility is associated with variants affecting the gene represented in this entry. Disabling pansclerotic morphea of childhood (DPMC) [MIM:620443] An autosomal dominant, severe systemic inflammatory disorder that is part of the juvenile localized scleroderma spectrum. DPMC is characterized by poor wound healing with rapidly progressive deep fibrosis involving the mucous membranes, dermis, subcutaneous fat, fascia, muscles, and bone, leading to contractures, musculoskeletal atrophy, and articular ankylosis. Systemic manifestations include cytopenias and hypogammaglobulinemia, but scleroderma-associated autoantibodies are usually not present. The disorder is associated with high morbidity and mortality due to squamous-cell carcinoma, restrictive pulmonary disease, sepsis, and gangrene. The disease is caused by variants affecting the gene represented in this entry.

Similarity. Belongs to the transcription factor STAT family.

RefSeq proteins (2): NP_001230764, NP_003142* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000980SH2Domain
IPR001217STATFamily
IPR008967p53-like_TF_DNA-bd_sfHomologous_superfamily
IPR012345STAT_TF_DNA-bd_NHomologous_superfamily
IPR013799STAT_TF_prot_interactionDomain
IPR013800STAT_TF_alphaDomain
IPR013801STAT_TF_DNA-bdDomain
IPR015988STAT_TF_CCHomologous_superfamily
IPR029839STAT4_DBDDomain
IPR035856STAT4_SH2Domain
IPR036535STAT_N_sfHomologous_superfamily
IPR036860SH2_dom_sfHomologous_superfamily
IPR046991STAT4_CCDomain
IPR048988STAT_linkerDomain

Pfam: PF00017, PF01017, PF02864, PF02865, PF21354

UniProt features (14 total): sequence variant 6, modified residue 3, mutagenesis site 2, chain 1, domain 1, sequence conflict 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q14765-F186.870.65

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (3): 667, 693, 721

Mutagenesis-validated functional residues (2):

PositionPhenotype
693abrogates phosphorylation and transcriptional activity.
721about 50% loss of transcriptional activity.

Function

Pathways and Gene Ontology

Reactome pathways

12 pathways

IDPathway
R-HSA-8854691Interleukin-20 family signaling
R-HSA-8950505Gene and protein expression by JAK-STAT signaling after Interleukin-12 stimulation
R-HSA-8984722Interleukin-35 Signalling
R-HSA-9020591Interleukin-12 signaling
R-HSA-9020933Interleukin-23 signaling
R-HSA-9020958Interleukin-21 signaling
R-HSA-9942503Differentiation of naive CD4+ T cells to T helper 1 cells (Th1 cells)
R-HSA-1280215Cytokine Signaling in Immune system
R-HSA-168256Immune System
R-HSA-447115Interleukin-12 family signaling
R-HSA-449147Signaling by Interleukins
R-HSA-451927Interleukin-2 family signaling

MSigDB gene sets: 696 (showing top): GSE45365_NK_CELL_VS_BCELL_DN, REACTOME_INTERLEUKIN_2_FAMILY_SIGNALING, AGGAAGC_MIR5163P, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, LU_IL4_SIGNALING, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_RESPONSE_TO_PEPTIDE, GOBP_T_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE, MODULE_45, MODULE_64, GOBP_ALPHA_BETA_T_CELL_DIFFERENTIATION, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, NIKOLSKY_OVERCONNECTED_IN_BREAST_CANCER, GOBP_CELL_SURFACE_RECEPTOR_SIGNALING_PATHWAY_VIA_JAK_STAT, GOBP_CELL_ACTIVATION_INVOLVED_IN_IMMUNE_RESPONSE

GO Biological Process (13): regulation of transcription by RNA polymerase II (GO:0006357), defense response (GO:0006952), cell surface receptor signaling pathway via JAK-STAT (GO:0007259), cytokine-mediated signaling pathway (GO:0019221), interleukin-12-mediated signaling pathway (GO:0035722), regulation of cell population proliferation (GO:0042127), response to peptide hormone (GO:0043434), T-helper 1 cell differentiation (GO:0045063), positive regulation of transcription by RNA polymerase II (GO:0045944), response to interleukin-6 (GO:0070741), regulation of DNA-templated transcription (GO:0006355), immune response (GO:0006955), signal transduction (GO:0007165)

GO Molecular Function (6): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription factor activity (GO:0003700), identical protein binding (GO:0042802), DNA binding (GO:0003677), protein binding (GO:0005515)

GO Cellular Component (8): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), centriole (GO:0005814), cytosol (GO:0005829), nuclear body (GO:0016604), RNA polymerase II transcription regulator complex (GO:0090575)

Reactome top-level categories

Rollup of top-7 pathways:

CategoryPathways
Signaling by Interleukins3
Interleukin-12 family signaling3
Interleukin-12 signaling1
Interleukin-2 family signaling1
Differentiation of T cells1
Immune System1
Cytokine Signaling in Immune system1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
regulation of DNA-templated transcription2
transcription by RNA polymerase II2
regulation of cellular process2
regulation of transcription by RNA polymerase II2
RNA polymerase II transcription regulatory region sequence-specific DNA binding2
intracellular membraneless organelle2
response to stress1
cell surface receptor signaling pathway via STAT1
cell surface receptor signaling pathway1
cellular response to cytokine stimulus1
cytokine-mediated signaling pathway1
cellular response to interleukin-121
cell population proliferation1
response to hormone1
response to nitrogen compound1
response to oxygen-containing compound1
alpha-beta T cell activation involved in immune response1
T cell differentiation involved in immune response1
T-helper 1 type immune response1
T-helper cell differentiation1
positive regulation of DNA-templated transcription1
response to cytokine1
DNA-templated transcription1
regulation of gene expression1
regulation of RNA biosynthetic process1
immune system process1
response to stimulus1
cell communication1
cellular process1
signaling1
cellular response to stimulus1
cis-regulatory region sequence-specific DNA binding1
chromatin1
DNA-binding transcription factor activity1
transcription cis-regulatory region binding1
transcription regulator activity1
protein binding1
nucleic acid binding1
binding1

Protein interactions and networks

STRING

2286 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
STAT4IL12RB2Q99665923
STAT4IFNGP01579917
STAT4IL12RB1P42701901
STAT4TYK2P29597900
STAT4STAT1P42224888
STAT4TBX21Q9UL17885
STAT4IRF5Q13568860
STAT4IFNAR1P17181856
STAT4IL6P05231845
STAT4JAK1P23458845
STAT4IL23RQ5VWK5822
STAT4PTPN22Q9Y2R2819
STAT4CD4P01730808
STAT4GATA3P23771799
STAT4IL18Q14116788

IntAct

49 interactions, top by confidence:

ABTypeScore
STAT4STAT4psi-mi:“MI:0407”(direct interaction)0.560
KLF11STAT4psi-mi:“MI:0915”(physical association)0.560
STAT4NUP58psi-mi:“MI:0915”(physical association)0.560
STAT4STAT1psi-mi:“MI:0915”(physical association)0.540
P/V/CSTAT1psi-mi:“MI:0914”(association)0.530
STAT4IL12RB2psi-mi:“MI:0914”(association)0.530
STAT4psi-mi:“MI:0915”(physical association)0.500
STAT3psi-mi:“MI:0914”(association)0.500
SH2D1BSTAT4psi-mi:“MI:0915”(physical association)0.490
CRKSTAT4psi-mi:“MI:0915”(physical association)0.490
STAT4SH2D1Bpsi-mi:“MI:0915”(physical association)0.490
NMISTAT4psi-mi:“MI:0915”(physical association)0.400
STAT4LAMTOR5psi-mi:“MI:0915”(physical association)0.400
STAT4psi-mi:“MI:0915”(physical association)0.400
STAT4Kdm5apsi-mi:“MI:0914”(association)0.350
P/V/CBCAS2psi-mi:“MI:0914”(association)0.350
STAT4FLOT1psi-mi:“MI:0914”(association)0.350
ZNF136STAT4psi-mi:“MI:0914”(association)0.350

BioGRID (35): STAT4 (Co-fractionation), STAT4 (Two-hybrid), STAT4 (Two-hybrid), STAT4 (Affinity Capture-Western), STAT4 (Reconstituted Complex), STAT4 (Affinity Capture-Western), STAT4 (Affinity Capture-Western), STAT4 (Affinity Capture-MS), STAT1 (Affinity Capture-MS), IL12RB2 (Protein-peptide), STAT4 (Affinity Capture-MS), STAT1 (Proximity Label-MS), KMT2D (Proximity Label-MS), SEC16A (Proximity Label-MS), SEC24A (Proximity Label-MS)

ESM2 similar proteins: A2AF47, A2AHJ4, O14795, O46469, O54828, O75916, O94810, P16258, P22059, P31266, P42228, P49805, Q06330, Q14765, Q2M146, Q2TAF4, Q3B7Z2, Q3SZ41, Q4QR86, Q5JSL3, Q5PNP1, Q5R8B7, Q5RFK6, Q5RHQ8, Q5U4W6, Q5ZL23, Q62717, Q62739, Q62769, Q6GLR7, Q6NXD8, Q6PCM2, Q80TJ1, Q80ZD1, Q86UW7, Q8BYR5, Q8BZN6, Q8K394, Q91880, Q91WS7

Diamond homologs: B5X561, Q14765, Q56XZ1, Q764M5, O02799, P40763, P42224, P42225, P42227, P42228, P52630, P52631, P61635, Q19S50, Q6DV79, Q7ZXK3, Q9PVX8, Q9WVL2, P42229, P42230, P42231, P42232, P51692, P52632, Q62771, Q95115, Q9TUM3, Q9TUZ0, Q9TUZ1, Q24151, Q54BD4, O00910, Q70GP4, P42226, P52633, Q61AP6, Q7QDU4, Q9NAD6

SIGNOR signaling

10 interactions.

AEffectBMechanism
JAK2up-regulatesSTAT4phosphorylation
MAPK14up-regulatesSTAT4phosphorylation
STAT4“up-regulates quantity by expression”PRF1“transcriptional regulation”
STAT4“up-regulates quantity by expression”S100A4“transcriptional regulation”
STAT4“up-regulates activity”LAMTOR5binding
TYK2“up-regulates activity”STAT4phosphorylation
IL12A“up-regulates activity”STAT4binding
STAT4“up-regulates activity”IFNG“transcriptional regulation”
IL23Rup-regulatesSTAT4
MAP2K6“up-regulates activity”STAT4phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 21 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Diseases of signal transduction by growth factor receptors and second messengers516.7×1e-03

GO biological processes:

GO termPartnersFoldFDR
positive regulation of gene expression510.8×7e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

531 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic1
Uncertain significance229
Likely benign250
Benign22

Top pathogenic / likely-pathogenic (2)

Variant IDHGVSClassification
2572048NM_003151.4(STAT4):c.1867C>T (p.His623Tyr)Pathogenic
2572046NM_003151.4(STAT4):c.1904C>T (p.Ala635Val)Likely pathogenic

SpliceAI

3942 predictions. Top by Δscore:

VariantEffectΔscore
2:191032956:A:Cdonor_gain1.0000
2:191033147:CCCCT:Cacceptor_gain1.0000
2:191033148:CCCT:Cacceptor_gain1.0000
2:191033151:T:Cacceptor_gain1.0000
2:191033489:CCA:Cdonor_gain1.0000
2:191033904:AACTT:Adonor_loss1.0000
2:191033905:ACTTA:Adonor_loss1.0000
2:191033906:CTT:Cdonor_loss1.0000
2:191033907:TTACC:Tdonor_loss1.0000
2:191033908:T:TGdonor_loss1.0000
2:191033909:A:ACdonor_gain1.0000
2:191033909:AC:Adonor_gain1.0000
2:191033909:ACC:Adonor_gain1.0000
2:191033909:ACCC:Adonor_loss1.0000
2:191033910:C:CCdonor_gain1.0000
2:191033910:C:CTdonor_loss1.0000
2:191033910:CC:Cdonor_gain1.0000
2:191033910:CCC:Cdonor_gain1.0000
2:191033910:CCCAT:Cdonor_gain1.0000
2:191034001:TGTTC:Tacceptor_gain1.0000
2:191034004:TC:Tacceptor_gain1.0000
2:191034004:TCCT:Tacceptor_loss1.0000
2:191034005:CC:Cacceptor_gain1.0000
2:191034006:CTA:Cacceptor_loss1.0000
2:191034007:T:Aacceptor_loss1.0000
2:191034010:A:Tacceptor_gain1.0000
2:191036158:TCTCA:Tdonor_loss1.0000
2:191036159:CTCA:Cdonor_loss1.0000
2:191036160:TCA:Tdonor_loss1.0000
2:191036161:CA:Cdonor_loss1.0000

AlphaMissense

4973 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
2:191033511:A:GW611R1.000
2:191033511:A:TW611R1.000
2:191033546:A:GF599S1.000
2:191033549:C:GR598T1.000
2:191033557:A:CF595L1.000
2:191033557:A:TF595L1.000
2:191033558:A:GF595S1.000
2:191033559:A:GF595L1.000
2:191033582:A:GL587P1.000
2:191033611:A:CF577L1.000
2:191033611:A:TF577L1.000
2:191033612:A:GF577S1.000
2:191033613:A:GF577L1.000
2:191033616:C:GG576R1.000
2:191033921:A:GW569R1.000
2:191033921:A:TW569R1.000
2:191061758:T:AK335N1.000
2:191061758:T:GK335N1.000
2:191148077:A:GW43R1.000
2:191148077:A:TW43R1.000
2:191032990:A:GF671S0.999
2:191033001:T:AK667N0.999
2:191033001:T:GK667N0.999
2:191033020:A:GL661P0.999
2:191033029:A:GL658P0.999
2:191033029:A:TL658Q0.999
2:191033122:G:TP627H0.999
2:191033542:A:CS600R0.999
2:191033542:A:TS600R0.999
2:191033543:C:AS600I0.999

dbSNP variants (sampled 300 via entrez): RS1000005308 (2:191075354 A>G), RS1000019127 (2:191214760 C>T), RS1000042334 (2:191136489 C>T), RS1000056234 (2:191053845 C>T), RS1000062838 (2:191127406 C>A), RS1000093706 (2:191164667 C>G), RS1000096258 (2:191032357 T>G), RS1000098164 (2:191074968 C>A), RS1000108923 (2:191099266 G>A), RS1000126035 (2:191081697 T>C), RS1000132287 (2:191086366 T>A), RS1000137003 (2:191133922 A>C), RS1000174011 (2:191081330 G>T), RS1000184936 (2:191168129 C>T), RS1000195559 (2:191210787 C>G,T)

Disease associations

OMIM: gene MIM:600558 | disease phenotypes: MIM:612253, MIM:620443

GenCC curated gene-disease

DiseaseClassificationInheritance
disabling pansclerotic morphea of childhoodStrongAutosomal dominant
systemic lupus erythematosusSupportiveUnknown

Mondo (3): systemic lupus erythematosus, susceptibility to, 11 (MONDO:0012835), disabling pansclerotic morphea of childhood (MONDO:0957497), systemic lupus erythematosus (MONDO:0007915)

Orphanet (0):

HPO phenotypes

193 total (30 of 193 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000031Epididymitis
HP:0000079Abnormality of the urinary system
HP:0000083Renal insufficiency
HP:0000093Proteinuria
HP:0000099Glomerulonephritis
HP:0000100Nephrotic syndrome
HP:0000123Nephritis
HP:0000155Oral ulcer
HP:0000488Retinopathy
HP:0000501Glaucoma
HP:0000518Cataract
HP:0000554Uveitis
HP:0000572Visual loss
HP:0000585Band keratopathy
HP:0000613Photophobia
HP:0000618Blindness
HP:0000707Abnormality of the nervous system
HP:0000708Atypical behavior
HP:0000709Psychosis
HP:0000716Depression
HP:0000737Irritability
HP:0000790Hematuria
HP:0000822Hypertension
HP:0000951Abnormality of the skin
HP:0000969Edema
HP:0000988Skin rash
HP:0000992Cutaneous photosensitivity
HP:0001061Acne
HP:0001094Iridocyclitis

GWAS associations

94 associations (top):

StudyTraitp-value
GCST000144_5Systemic lupus erythematosus9.000000e-14
GCST000216_8Systemic lupus erythematosus8.000000e-11
GCST000507_11Systemic lupus erythematosus5.000000e-42
GCST000650_3Systemic sclerosis3.000000e-09
GCST000677_2Rheumatoid arthritis2.000000e-06
GCST000987_9Celiac disease or Rheumatoid arthritis4.000000e-10
GCST000996_2Systemic lupus erythematosus2.000000e-20
GCST000996_6Systemic lupus erythematosus8.000000e-06
GCST001010_12Primary biliary cholangitis2.000000e-19
GCST001146_1Systemic sclerosis2.000000e-13
GCST001160_2Systemic sclerosis9.000000e-08
GCST001277_21Liver enzyme levels (gamma-glutamyl transferase)1.000000e-11
GCST001685_3Primary biliary cholangitis1.000000e-06
GCST001708_1Systemic lupus erythematosus4.000000e-14
GCST001725_73Inflammatory bowel disease3.000000e-11
GCST001768_2Behcet’s disease6.000000e-09
GCST001768_3Behcet’s disease4.000000e-08
GCST001775_2Hepatocellular carcinoma in hepatitis B infection2.000000e-10
GCST001795_19Systemic lupus erythematosus1.000000e-21
GCST001804_2Behcet’s disease1.000000e-09
GCST002069_10Systemic lupus erythematosus and Systemic sclerosis3.000000e-11
GCST002217_2Sjögren’s syndrome2.000000e-17
GCST002318_44Rheumatoid arthritis1.000000e-12
GCST002318_45Rheumatoid arthritis2.000000e-08
GCST002318_60Rheumatoid arthritis4.000000e-19
GCST002463_12Systemic lupus erythematosus5.000000e-09
GCST003103_1Systemic lupus erythematosus4.000000e-07
GCST003129_7Primary biliary cholangitis2.000000e-14
GCST003155_43Systemic lupus erythematosus6.000000e-122
GCST003156_10Systemic lupus erythematosus9.000000e-17

EFO canonical traits (7, from GWAS)

EFO IDTrait name
EFO:0004267biliary liver cirrhosis
EFO:0004532serum gamma-glutamyl transferase measurement
EFO:1001017limited scleroderma
EFO:0008536anti-centromere-antibody-positive systemic scleroderma
EFO:0009087non-typhoidal Salmonella bacteremia
EFO:0009933Thyroid preparation use measurement
EFO:0004842eosinophil count

MeSH disease descriptors (1)

DescriptorNameTree numbers
D008180Lupus Erythematosus, SystemicC17.300.480; C20.111.590

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL4523296 (SINGLE PROTEIN), CHEMBL4523706 (PROTEIN-PROTEIN INTERACTION)

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs7574865Efficacy3etanerceptRheumatoid arthritis

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs7574865STAT432.501etanercept

ChEMBL bioactivities

4 potent at pChembl≥5 of 4 total, top 3 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
6.44IC50360nMCHEMBL6144023
6.00Kd1000nMCHEMBL4452527
5.96IC501100nMCHEMBL4452527

PubChem BioAssay actives

2 with measured affinity, of 13 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
[[2-[[(5S,8S,10aR)-8-[[(2S)-5-amino-1-(benzhydrylamino)-1,5-dioxopentan-2-yl]carbamoyl]-3-[8-[2-(2,6-dioxopiperidin-3-yl)-1-oxo-3H-isoindol-4-yl]oct-7-ynoyl]-6-oxo-1,2,4,5,8,9,10,10a-octahydropyrrolo[1,2-a][1,5]diazocin-5-yl]carbamoyl]-1H-indol-5-yl]-difluoromethyl]phosphonic acid1559101: Binding affinity to recombinant human His/SUMO-tagged STAT4 (133 to 705 residues) expressed in Escherichia coli Rosetta (DE3) incubated for 1 hr by fluorescence polarization assaykd1.0000uM

CTD chemical–gene interactions

57 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects cotreatment, decreases expression, affects expression, increases expression4
sodium arseniteaffects cotreatment, decreases expression, increases abundance, increases expression3
Benzeneincreases expression3
Benzo(a)pyreneaffects methylation, decreases methylation, increases expression, affects response to substance3
perfluorooctanoic acidincreases activity, increases expression2
nickel sulfateincreases expression2
Arsenicincreases methylation, affects cotreatment, decreases expression, increases abundance2
Estradiolaffects cotreatment, decreases expression, affects binding, increases expression2
Cyclosporinedecreases expression, increases expression2
aristolochic acid Idecreases expression1
triphenyl phosphateaffects expression1
propionaldehydeincreases expression1
trichostatin Aincreases expression1
4-aminophenylarsenoxideaffects binding, decreases reaction1
leptomycin Baffects localization1
S-(1,2-dichlorovinyl)cysteineincreases expression, affects cotreatment, affects response to substance1
arsenic disulfidedecreases expression1
azoxystrobindecreases expression1
deguelindecreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamidedecreases expression, affects cotreatment1
pyrachlostrobindecreases expression1
dorsomorphindecreases expression, affects cotreatment1
jinfukangaffects cotreatment, increases expression1
picoxystrobindecreases expression1
Resveratrolaffects cotreatment, decreases expression1
Sunitinibdecreases expression1
Arsenic Trioxideaffects binding, decreases reaction1
Acetaminophenincreases expression1
Air Pollutantsdecreases expression1
Allergensincreases expression1

ChEMBL screening assays

20 unique, capped per target: 20 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL4356793BindingBinding affinity to recombinant human His/SUMO-tagged STAT4 (133 to 705 residues) expressed in Escherichia coli Rosetta (DE3) incubated for 1 hr by fluorescence polarization assayStructure-Based Discovery of SD-36 as a Potent, Selective, and Efficacious PROTAC Degrader of STAT3 Protein. — J Med Chem

Cellosaurus cell lines

11 cell lines: 5 cancer cell line, 3 embryonic stem cell, 2 transformed cell line, 1 telomerase immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_A6U5SEES3-1V human STAT4, clone1Embryonic stem cellMale
CVCL_A6U6SEES3-1V human STAT4, clone2Embryonic stem cellMale
CVCL_A6U7SEES3-1V human STAT4, clone3Embryonic stem cellMale
CVCL_B7ZMAbcam Raji STAT4 KOCancer cell lineMale
CVCL_C0AFAbcam THP-1 STAT4 KOCancer cell lineMale
CVCL_C3KJN/Tert-1 STAT4Telomerase immortalized cell lineMale
CVCL_C7C3Abcam PC-3 STAT4 KOCancer cell lineMale
CVCL_D8BLUbigene A-549 STAT4 KOCancer cell lineMale
CVCL_D8WGUbigene HCT 116 STAT4 KOCancer cell lineMale
CVCL_D9T9Ubigene HEK293 STAT4 KOTransformed cell lineFemale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00120887PHASE4COMPLETEDLupus Atherosclerosis Prevention Study
NCT00125307PHASE4COMPLETEDTacrolimus for the Treatment of Systemic Lupus Erythematosus With Membranous Nephritis
NCT00188188PHASE4UNKNOWNStudy of Endothelial Dysfunction in Systemic Lupus and Its Role in Heart Disease
NCT00371501PHASE4COMPLETEDAspirin and Statins for Prevention of Atherosclerosis and Arterial Thromboembolism in Systemic Lupus Erythematosus
NCT00392093PHASE4COMPLETEDEffect of Hormone Replacement Therapy on Lupus Activity
NCT00413361PHASE4COMPLETEDThe Reduction of Systemic Lupus Erythematosus Flares :Study PLUS
NCT00508898PHASE4WITHDRAWNThe Efficacy and Safety of Calcitriol for the Treatment of Lupus Nephritis and Persistent Proteinuria
NCT00668330PHASE4COMPLETEDSteroid Induced Osteoporosis in Patients With Systemic Lupus Erythematosus
NCT00739050PHASE4TERMINATEDEffect of Simvastatin on Endothelial Function in Premenopausal Women With Systemic Lupus Erythematosus (0733-271)(TERMINATED)
NCT00815282PHASE4COMPLETEDImmune Response After Human Papillomavirus Vaccination in Patients With Autoimmune Disease
NCT00828178PHASE4COMPLETEDEfficacy of Fish Oil in Lupus Patients
NCT00866229PHASE4UNKNOWNEfficacy and Adverse Effect of Simvastatin Compare to Rosuvastatin in Systemic Lupus Erythematosus (SLE) Patients With Corticosteroid Therapy and High Low-Density Lipoprotein (LDL) Cholesterol Level
NCT00911521PHASE4COMPLETEDImmunogenicity and Safety of a Quadrivalent Human Papillomavirus (HPV) Vaccine in Patients With SLE: a Controlled Study
NCT01101802PHASE4COMPLETEDMycophenolate Mofetil in Systemic Lupus Erythematosus (MISSILE)
NCT01112215PHASE4COMPLETEDEnteric-coated Mycophenolate Sodium Versus Azathioprine for the Extra-renal Lupus Manifestations
NCT01151644PHASE4UNKNOWNSafety and Efficacy of Anti-Pandemic H1N1 Vaccination in Rheumatic Diseases
NCT01276782PHASE4WITHDRAWNLevothyroxine in Pregnant SLE Patients
NCT01322308PHASE4COMPLETEDEffect of Pioglitazone on Endothelial Function in Premenopausal Women With Uncomplicated Systemic Lupus Erythematosus
NCT01359826PHASE4WITHDRAWNThe Effect of Milnacipran on Fatigue and Quality of Life in Lupus Patients
NCT01597492PHASE4COMPLETEDA Study to Evaluate the Effect of Belimumab on Vaccine Responses in Subjects With Systemic Lupus Erythematosus (SLE)
NCT01632241PHASE4COMPLETEDEfficacy and Safety of Belimumab in Black Race Patients With Systemic Lupus Erythematosus (SLE)
NCT01705977PHASE4COMPLETEDBelimumab Assessment of Safety in SLE
NCT01753401PHASE4COMPLETEDActhar for the Treatment of Systemic Lupus Erythematosus (SLE) in Patients With a History of Persistently Active Disease
NCT02270970PHASE4UNKNOWNEvaluation of Belimumab Impact on a BLyS Activity Signature Test in the Absence of Confounding Polypharmacy
NCT02477150PHASE4COMPLETEDSafety and Immunogenicity of a Zoster Vaccine in SLE
NCT02741960PHASE4COMPLETEDThe Effect of Metformin on Reducing Lupus Flares
NCT02779153PHASE4WITHDRAWNActhar SLE (Systemic Lupus Erythematosus)
NCT02953821PHASE4COMPLETEDActhar Gel for Active Systemic Lupus Erythematosus (SLE)
NCT03042260PHASE4UNKNOWNProphylactic Trimethoprim/Sulfamethoxazole to Prevent Severe Infections in Patients With Lupus Erythematous
NCT03098823PHASE4COMPLETEDA Crossover Study to Compare RAYOS to IR Prednisone to Improve Fatigue and Morning Symptoms for SLE
NCT03122431PHASE4COMPLETEDRelevance of Monitoring Blood and Salivar Levels of Drugs Used in Rheumatic Autoimmune Diseases
NCT03543839PHASE4RECRUITINGTrial of Belimumab in Early Lupus
NCT04447053PHASE4UNKNOWNSequential Belimumab and T-cell Based Therapy in SLE
NCT04515719PHASE4COMPLETEDEfficacy and Safety of Belimumab in SLE Patients
NCT04893161PHASE4UNKNOWNA Model About the Response of Belimumab in SLE
NCT04908865PHASE4COMPLETEDOpen-label Study of Belimumab Plus Standard Therapy in Chinese Pediatric Participants With Active Systemic Lupus Erythematosus (SLE)
NCT04956484PHASE4COMPLETEDBelimumab In Early Systemic Lupus Erythematosus
NCT05559671PHASE4RECRUITINGSafety of the Herpes Zoster Subunit Vaccine in Lupus
NCT05666336PHASE4UNKNOWNMulti-omics Studies on the Efficacy of Telitacicept in Chinese SLE Patients
NCT05748925PHASE4COMPLETEDCardio Renal Effects of SGLT2 Inhibitors Among Lupus Nephritis Patients