STK11
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Also known as PJSLKB1
Summary
STK11 (serine/threonine kinase 11, HGNC:11389) is a protein-coding gene on chromosome 19p13.3, encoding Serine/threonine-protein kinase STK11 (Q15831). Tumor suppressor serine/threonine-protein kinase that controls the activity of AMP-activated protein kinase (AMPK) family members, thereby playing a role in various processes such as cell metabolism, cell polarity, apoptosis and DNA damage response. In precision oncology, STK11 Mutation confers sensitivity to Vistusertib in Lung Non-small Cell Carcinoma (CIViC Level B); 10 further curated variant–drug associations are listed below. It is a selective cancer dependency (DepMap: 18.9% of cell lines) and haploinsufficient (ClinGen: sufficient evidence).
The protein encoded by this gene is a serine/threonine kinase that regulates cell polarity and energy metabolism and functions as a tumor suppressor. Mutations in this gene have been associated with the autosomal dominant Peutz-Jeghers syndrome, as well as with skin, pancreatic, and testicular cancers.
Source: NCBI Gene 6794 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Peutz-Jeghers syndrome (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 12
- Clinical variants (ClinVar): 2,818 total — 310 pathogenic, 80 likely-pathogenic
- Phenotypes (HPO): 69
- Druggable target: yes — 17 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 11 curated variant–drug associations
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 7 cancer types
- Cancer dependency (DepMap): dependent in 18.9% of screened cell lines
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_000455
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11389 |
| Approved symbol | STK11 |
| Name | serine/threonine kinase 11 |
| Location | 19p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PJS, LKB1 |
| Ensembl gene | ENSG00000118046 |
| Ensembl biotype | protein_coding |
| OMIM | 602216 |
| Entrez | 6794 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 12 protein_coding, 5 nonsense_mediated_decay, 3 retained_intron
ENST00000326873, ENST00000585465, ENST00000585748, ENST00000585851, ENST00000586358, ENST00000589152, ENST00000591133, ENST00000593219, ENST00000652231, ENST00000714318, ENST00000714319, ENST00000714320, ENST00000714321, ENST00000714322, ENST00000714323, ENST00000916852, ENST00000916853, ENST00000942781, ENST00000942782, ENST00000942783
RefSeq mRNA: 2 — MANE Select: NM_000455
NM_000455, NM_001407255
CCDS: CCDS45896
Canonical transcript exons
ENST00000326873 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002739759 | 1219324 | 1219413 |
| ENSE00004013651 | 1226454 | 1226663 |
| ENSE00004013652 | 1222985 | 1223172 |
| ENSE00004013654 | 1221213 | 1221340 |
| ENSE00004013655 | 1218417 | 1218500 |
| ENSE00004013656 | 1220373 | 1220505 |
| ENSE00004013657 | 1220581 | 1220717 |
| ENSE00004013658 | 1221949 | 1222006 |
| ENSE00004013659 | 1227593 | 1228431 |
| ENSE00004023558 | 1205778 | 1207203 |
Expression profiles
Bgee: expression breadth ubiquitous, 238 present calls, max score 97.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.6234 / max 197.3485, expressed in 1791 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 172896 | 13.2149 | 1791 |
| 172897 | 0.2612 | 81 |
| 172898 | 0.0489 | 10 |
| 172900 | 0.0314 | 6 |
| 172899 | 0.0274 | 4 |
| 172903 | 0.0174 | 6 |
| 172901 | 0.0164 | 4 |
| 172902 | 0.0057 | 2 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 97.81 | gold quality |
| right testis | UBERON:0004534 | 97.81 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.71 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.57 | gold quality |
| testis | UBERON:0000473 | 95.14 | gold quality |
| granulocyte | CL:0000094 | 95.08 | gold quality |
| muscle of leg | UBERON:0001383 | 94.99 | gold quality |
| stromal cell of endometrium | CL:0002255 | 94.96 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.44 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 94.42 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 94.24 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.03 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.84 | gold quality |
| apex of heart | UBERON:0002098 | 93.68 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.01 | gold quality |
| transverse colon | UBERON:0001157 | 92.91 | gold quality |
| body of stomach | UBERON:0001161 | 92.84 | gold quality |
| endothelial cell | CL:0000115 | 92.69 | gold quality |
| right atrium auricular region | UBERON:0006631 | 92.65 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 92.65 | gold quality |
| left adrenal gland | UBERON:0001234 | 92.57 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 92.57 | gold quality |
| skin of leg | UBERON:0001511 | 92.56 | gold quality |
| endocervix | UBERON:0000458 | 92.53 | gold quality |
| right uterine tube | UBERON:0001302 | 92.47 | gold quality |
| left ovary | UBERON:0002119 | 92.46 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.36 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 92.34 | gold quality |
| right adrenal gland | UBERON:0001233 | 92.33 | gold quality |
| sural nerve | UBERON:0015488 | 92.32 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.88 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| CPS1 | Repression |
Upstream regulators (CollecTRI, top): CREBZF, ESR1, FOXO3, HNF4A, NFYA, NFYB, NKX2-1, NR1H4, SP1, STAT3, STAT5A, TP53, TXK
miRNA regulators (miRDB)
32 targeting STK11, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6870-5P | 99.99 | 68.55 | 2115 |
| HSA-MIR-4723-5P | 99.97 | 68.70 | 2034 |
| HSA-MIR-5698 | 99.97 | 68.49 | 2029 |
| HSA-MIR-7111-5P | 99.97 | 68.48 | 2062 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-6731-5P | 99.28 | 67.42 | 2375 |
| HSA-MIR-6814-5P | 99.03 | 66.68 | 1273 |
| HSA-MIR-6829-5P | 98.86 | 65.12 | 1480 |
| HSA-MIR-5011-3P | 98.63 | 64.81 | 638 |
| HSA-MIR-4782-5P | 98.35 | 69.33 | 1474 |
| HSA-MIR-5706 | 98.35 | 69.33 | 1463 |
| HSA-MIR-4665-5P | 97.91 | 67.69 | 1536 |
| HSA-MIR-6787-5P | 97.54 | 63.85 | 457 |
| HSA-MIR-192-3P | 97.52 | 67.66 | 1001 |
| HSA-MIR-6839-5P | 96.74 | 68.29 | 1088 |
| HSA-MIR-378J | 96.44 | 66.20 | 1020 |
| HSA-MIR-10396B-5P | 94.99 | 63.57 | 358 |
| HSA-MIR-1908-5P | 94.99 | 63.41 | 352 |
| HSA-MIR-663A | 94.99 | 63.54 | 378 |
| HSA-MIR-4474-5P | 94.23 | 67.95 | 568 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
DepMap (CRISPR cell-line fitness): dependent in 18.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Various fungi stimulated antimicrobial peptides through at least two different pathways requiring Relish and/or Dif. (PMID:14985331)
- Dif and Dorsal control crucial aspects of the cellular immune response (PMID:17060622)
- Molecular modeling was used to compare the tertiary structure of Dif with two other Drosophila proteins. (PMID:17785540)
- Data show that the DIF and Relish complex is detectable in whole animal extracts, suggesting that this heterodimer may function in vivo to increase the spectrum and level of antimicrobial peptide production in response to different infections. (PMID:20679214)
- DIF factor seems to be involved in the response to fungal infection after a mild cold stress and in the resistance to heat. DIF seems to have no role in the increased longevity of non-infected flies and resistance to a severe cold shock. (PMID:22791143)
- Fasting increases survival to cold in dif mutant Drosophila melanogaster. (PMID:25663303)
- These results, not only revealed a novel function and modulation pattern of miR-958, but also provided a new insight into the underlying molecular mechanisms of Toll signaling in regulation of innate immunity. (PMID:27974298)
- Study shows that Drosophila miR-317 only targets Dif-Rc, but not Dif-Ra/b/d, implying that miRNAs can regulate different isoforms of an alternative splicing gene to fine tune immune responses and maintain homeostasis in post-transcriptional level. During Gram-positive bacterial infection, the overexpressed miR-317 flies have poor survival outcome suggesting that the miR-317 might play a key role in Drosophila survival. (PMID:30708026)
- Bacterial recognition by PGRP-SA and downstream signalling by Toll/DIF sustain commensal gut bacteria in Drosophila. (PMID:35007276)
- Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses. (PMID:35379744)
- This paper describes the identification and characterization of the first binding partner of LKB1; the SWI/SNF chromatin remodeling protein Brg1. (PMID:11445556)
- mutation screening at the RNA level in Peutz-Jeghers syndrome reveals complex splicing abnormalities and a novel mRNA isoform (STK11 c.597(insertion mark)598insIVS4 (PMID:11668633)
- STK11/LKB1 gene in IPMNs (intraductal papillary-mucinous neoplasms of the pancreas) with LOH revealed a germline mutation in one IPMN that arose in a patient with PJS (Peutz-Jeghers Syndrome) and a somatic mutation in 1 of the 20 sporadic IPMNs. (PMID:11733352)
- LKB1 is phosphorylated at Ser(431), Ser(31), Ser(325) and Thr(366) (PMID:11853558)
- Inactivation of LKB1/STK11 is a common event in adenocarcinomas of the lung. (PMID:12097271)
- This reports for the first time the presence of frequent LKB1 inactivating mutations in human lung cancer. (PMID:12097271)
- polyps arising in the Lkb1+/- mice were found to be hamartomas that were histologically indistinguishable from polyps resected from PJS patients, indicating that Lkb1+/- mice model human PJS polyposis (PMID:12218179)
- These observations provide the first link between ATM and LKB1 and suggest that ATM could regulate LKB1 (PMID:12234250)
- Results show that Cdc37 and heat shock protein 90 bind specifically to the kinase domain of LKB1. (PMID:12489981)
- mutations in the STK11 gene characterize minimal deviation adenocarcinoma of the uterine cervix (PMID:12533684)
- LKB1/STK11 variants in a group of Peutz-Jeghers syndrome Italian patients lack serine/threonine kinase activity, in contrast to wild type LKB1/STK11, and are unable to suppress the growth of melanoma G361 cells in vitro. (PMID:12552571)
- identification and characterization of an LKB1-specific adaptor protein and substrate, STRAD (STe20 Related ADaptor); results imply that STRAD plays a key role in regulating the tumour suppressor activities of LKB1 (PMID:12805220)
- LKB1 kinase, which is associated with Peutz-Jeghers cancer-susceptibility syndrome, phosphorylates and activates AMPK in vitro. (PMID:12847291)
- results show that LKB1 can direct the phosphorylation of the serine-threonine kinase PAR1A (PMID:12879020)
- LKB1 inactivation may play a role in the critical transition from premalignant to malignant tumor growth (PMID:12912948)
- LKB1-induced apoptosis is p53 independent but might be p73-mediated in pancreatic tumors (PMID:14511408)
- heteromeric complex containing the molecular chaperones Hsp90 and Cdc37/p50 interacts with the kinase domain of LKB1 (PMID:14668798)
- LKB1 functions as a master upstream protein kinase, regulating AMPK-related kinases as well as AMPK. (PMID:14976552)
- LKB1 directly phosphorylates Thr-172 of AMPKalpha in vitro and activates its kinase activity. (PMID:14985505)
- our results reveal that several important factors contribute to LKB1-mediated carcinogenesis in LADs, confirming previous observations and identifying new putative pathways that should help to elucidate the biological role of LKB1. (PMID:15077168)
- the risk for developing cancer at ages 20, 30, 40, 50, 60, and 70 years was 1%, 3%, 19%, 32%, 63%, and 81%, respectively (PMID:15188174)
- LKB1, the gene mutated in Peutz-Jeghers syndrome (PJS), acts as a tumor suppressor by activating TSC2, the gene mutated in Tuberous sclerosis complex (PMID:15231735)
- Cases in which Peutz-Jegher Syndrome patients did not harbor mutation of STK11. (PMID:15287029)
- IGF-1 induces AMPK-alpha subunit phosphorylation via an ATM-dependent and LKB1-independent pathway (PMID:15485651)
- Mutations in LKB1 cause the inherited Peutz-Jeghers syndrome. (PMID:15561763)
- The unusual splicing defect of LKB1 associated with this Peutz-Jeghers syndrome-causing mutation uncovers differences in splice-site recognition between the major and minor pre-mRNA splicing pathways (PMID:15608654)
- report of a novel truncating-type germline mutation of the STK11 gene in a Peutz-Jeghers syndrome patient with gastric cancer (PMID:15617552)
- LKB1 mutants, in Peutz-Jeghers syndrome, fail to activate GSK-3beta, preventing it from inhibiting Wnt signaling. (PMID:15731909)
- promoter element sequence changes in STK11/LKB1 are unlikely to contribute to Peutz-Jeghers syndrome (PMID:15774015)
- LKB1 is crucial for the regulation of cell polarity (PMID:15800014)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | stk11 | ENSDARG00000046074 |
| mus_musculus | Stk11 | ENSMUSG00000003068 |
| rattus_norvegicus | Stk11 | ENSRNOG00000014287 |
| drosophila_melanogaster | Lkb1 | FBGN0038167 |
| caenorhabditis_elegans | WBGENE00003919 |
Paralogs (22): CAMKK1 (ENSG00000004660), CAMK1G (ENSG00000008118), CAMK2B (ENSG00000058404), CAMK2A (ENSG00000070808), MYLK2 (ENSG00000101306), CAMKK2 (ENSG00000110931), STK33 (ENSG00000130413), PNCK (ENSG00000130822), DCLK1 (ENSG00000133083), CAMK1 (ENSG00000134072), MYLK3 (ENSG00000140795), CAMK2D (ENSG00000145349), MYLK4 (ENSG00000145949), PSKH2 (ENSG00000147613), CAMK2G (ENSG00000148660), PHKG2 (ENSG00000156873), PSKH1 (ENSG00000159792), DCLK3 (ENSG00000163673), CAMKV (ENSG00000164076), PHKG1 (ENSG00000164776), DCLK2 (ENSG00000170390), CAMK1D (ENSG00000183049)
Protein
Protein identifiers
Serine/threonine-protein kinase STK11 — Q15831 (reviewed: Q15831)
Alternative names: Liver kinase B1, Renal carcinoma antigen NY-REN-19
All UniProt accessions (12): Q15831, A0A087WT72, A0A0S2Z4D1, A0A1B0GUW2, A0AAQ5BHS0, A0AAQ5BHS4, A0AAQ5BHU8, A0AAQ5BHW9, A0AAQ5BHX7, A0AAQ5BHX9, K7EMR0, K7EQN8
UniProt curated annotations — full annotation on UniProt →
Function. Tumor suppressor serine/threonine-protein kinase that controls the activity of AMP-activated protein kinase (AMPK) family members, thereby playing a role in various processes such as cell metabolism, cell polarity, apoptosis and DNA damage response. Acts by phosphorylating the T-loop of AMPK family proteins, thus promoting their activity: phosphorylates PRKAA1, PRKAA2, BRSK1, BRSK2, MARK1, MARK2, MARK3, MARK4, NUAK1, NUAK2, SIK1, SIK2, SIK3 and SNRK but not MELK. Also phosphorylates non-AMPK family proteins such as STRADA, PTEN and possibly p53/TP53. Acts as a key upstream regulator of AMPK by mediating phosphorylation and activation of AMPK catalytic subunits PRKAA1 and PRKAA2 and thereby regulates processes including: inhibition of signaling pathways that promote cell growth and proliferation when energy levels are low, glucose homeostasis in liver, activation of autophagy when cells undergo nutrient deprivation, and B-cell differentiation in the germinal center in response to DNA damage. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton. Required for cortical neuron polarization by mediating phosphorylation and activation of BRSK1 and BRSK2, leading to axon initiation and specification. Involved in DNA damage response: interacts with p53/TP53 and recruited to the CDKN1A/WAF1 promoter to participate in transcription activation. Able to phosphorylate p53/TP53; the relevance of such result in vivo is however unclear and phosphorylation may be indirect and mediated by downstream STK11/LKB1 kinase NUAK1. Also acts as a mediator of p53/TP53-dependent apoptosis via interaction with p53/TP53: translocates to the mitochondrion during apoptosis and regulates p53/TP53-dependent apoptosis pathways. Regulates UV radiation-induced DNA damage response mediated by CDKN1A. In association with NUAK1, phosphorylates CDKN1A in response to UV radiation and contributes to its degradation which is necessary for optimal DNA repair. Has a role in spermiogenesis.
Subunit / interactions. Catalytic component of a trimeric complex composed of STK11/LKB1, STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): the complex tethers STK11/LKB1 in the cytoplasm and stimulates its catalytic activity. Found in a ternary complex composed of SMAD4, STK11/LKB1 and STK11IP. Interacts with p53/TP53, SMAD4, STK11IP and WDR6. Interacts with NR4A1. Interacts with NISCH; this interaction may increase STK11 activity. Interacts with PTEN; leading to PTEN phosphorylation. Interacts with SIRT1; the interaction deacetylates STK11. Interacts with CDKN1A.
Subcellular location. Nucleus. Cytoplasm. Membrane. Mitochondrion Nucleus.
Tissue specificity. Ubiquitously expressed. Strongest expression in testis and fetal liver.
Post-translational modifications. Phosphorylated by ATM at Thr-363 following ionizing radiation (IR). Phosphorylation at Ser-428 by RPS6KA1 and/or some PKA is required to inhibit cell growth. Phosphorylation at Ser-428 is also required during neuronal polarization to mediate phosphorylation of BRSK1 and BRSK2. Phosphorylation by PKC/PRKCZ at Ser-399 in isoform 2 promotes metformin (or peroxynitrite)-induced nuclear export of STK11 and activation of AMPK. UV radiation-induced phosphorylation at Thr-363 mediates CDKN1A degradation. Acetylated. Deacetylation at Lys-48 enhances cytoplasmic localization and kinase activity in vitro.
Disease relevance. Peutz-Jeghers syndrome (PJS) [MIM:175200] An autosomal dominant disorder characterized by melanocytic macules of the lips, multiple gastrointestinal hamartomatous polyps and an increased risk for various neoplasms, including gastrointestinal cancer. The disease is caused by variants affecting the gene represented in this entry. Testicular germ cell tumor (TGCT) [MIM:273300] A common malignancy in males representing 95% of all testicular neoplasms. TGCTs have various pathologic subtypes including: unclassified intratubular germ cell neoplasia, seminoma (including cases with syncytiotrophoblastic cells), spermatocytic seminoma, embryonal carcinoma, yolk sac tumor, choriocarcinoma, and teratoma. The gene represented in this entry may be involved in disease pathogenesis. Defects in STK11 are associated with some sporadic cancers, especially lung cancers. Frequently mutated and inactivated in non-small cell lung cancer (NSCLC). Defects promote lung cancerigenesis process, especially lung cancer progression and metastasis. Confers lung adenocarcinoma the ability to trans-differentiate into squamous cell carcinoma. Also able to promote lung cancer metastasis, via both cancer-cell autonomous and non-cancer-cell autonomous mechanisms.
Activity regulation. Activated by forming a complex with STRAD (STRADA or STRADB) and CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta): STRADA (or STRADB)-binding promotes a conformational change of STK11/LKB1 in an active conformation, which is stabilized by CAB39/MO25alpha (or CAB39L/MO25beta) interacting with the STK11/LKB1 activation loop. Sequestration in the nucleus by NR4A1 prevents it from phosphorylating and activating cytoplasmic AMPK.
Similarity. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. LKB1 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q15831-1 | 1, LKB1(L) | yes |
| Q15831-2 | 2, LKB1(S) |
RefSeq proteins (2): NP_000446, NP_001394184 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR039154 | LKB1_c | Domain |
Pfam: PF00069
Enzyme classification (BRENDA):
- EC 2.7.11.1 — non-specific serine/threonine protein kinase (BRENDA: 71 organisms, 682 substrates, 228 inhibitors, 23 Km, 6 kcat entries)
Substrate kinetics (BRENDA)
8 substrates with measured Km, best-characterized 8. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.0007–0.64 | 11 |
| KKRAARATSNVFA | 0.013–0.045 | 3 |
| PAH1 PHOSPHATIDATE PHOSPHATASE | 0.0002 | 2 |
| RRRLSSLRA | 0.0036–0.0037 | 2 |
| GTP | 0.46 | 1 |
| KKRAARASSNVFA | 0.02 | 1 |
| LYS-LYS-PHE-ASN-ARG-THR-LEU-SER-VAL-ALA | 0.0093 | 1 |
| MYELIN BASIC PROTEIN | 0.145 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (123 total): sequence variant 50, modified residue 18, helix 15, mutagenesis site 12, strand 10, turn 4, region of interest 3, binding site 2, lipid moiety-binding region 2, compositionally biased region 2, chain 1, propeptide 1, domain 1, splice variant 1, active site 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2WTK | X-RAY DIFFRACTION | 2.65 |
| 8VSU | ELECTRON MICROSCOPY | 2.86 |
| 4ZDR | X-RAY DIFFRACTION | 2.9 |
| 5WXN | X-RAY DIFFRACTION | 2.93 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q15831-F1 | 79.27 | 0.61 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 176 (proton acceptor)
Ligand- & substrate-binding residues (2): 78; 55–63
Post-translational modifications (20): 31, 44, 399, 48, 96, 97, 189, 296, 311, 325, 336, 363, 401, 416, 423, 428, 430, 431, 418, 430
Mutagenesis-validated functional residues (12):
| Position | Phenotype |
|---|---|
| 44 | no effect on kinase activity. |
| 48 | no effect on basal nucleocytoplasmic localization, but fails to translocate to the cytoplasm when coexpressed with sirt1 |
| 48 | enhanced phosphorylation at thr-336 and ser-428, enhanced cytoplasmic localization and increased kinase activity. |
| 74 | impaired formation of a heterotrimeric complex with strada and cab39; when associated with a-204. |
| 78 | loss of kinase activity, leading to greatly reduced autophosphorylation. |
| 78 | loss of kinase activity, leading to reduced autophosphorylation and acting as a dominant-negative mutant. |
| 96 | no effect on kinase activity. |
| 97 | no effect on kinase activity. |
| 189 | reduced phosphorylation. |
| 194 | loss of kinase activity. |
| 204 | no effect. impaired formation of a heterotrimeric complex with strada and cab39; when associated with a-74. |
| 428 | no effect on kinase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
14 pathways
| ID | Pathway |
|---|---|
| R-HSA-163680 | AMPK inhibits chREBP transcriptional activation activity |
| R-HSA-380972 | Energy dependent regulation of mTOR by LKB1-AMPK |
| R-HSA-6804756 | Regulation of TP53 Activity through Phosphorylation |
| R-HSA-9614657 | FOXO-mediated transcription of cell death genes |
| R-HSA-1430728 | Metabolism |
| R-HSA-162582 | Signal Transduction |
| R-HSA-163685 | Integration of energy metabolism |
| R-HSA-165159 | MTOR signalling |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-3700989 | Transcriptional Regulation by TP53 |
| R-HSA-5633007 | Regulation of TP53 Activity |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
| R-HSA-9614085 | FOXO-mediated transcription |
MSigDB gene sets: 493 (showing top):
GOBP_NEGATIVE_REGULATION_OF_EPITHELIAL_CELL_PROLIFERATION, GOBP_DENDRITE_DEVELOPMENT, GOBP_NEGATIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_RESPONSE_TO_IONIZING_RADIATION, GOBP_REGULATION_OF_AUTOPHAGY, KEGG_ADIPOCYTOKINE_SIGNALING_PATHWAY, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GOBP_NEURON_PROJECTION_EXTENSION, GOBP_REGULATION_OF_PHOSPHORYLATION, GOBP_VESICLE_LOCALIZATION, GOBP_CELLULAR_RESPONSE_TO_UV, GOBP_THYMIC_T_CELL_SELECTION, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS
GO Biological Process (44): regulation of cell growth (GO:0001558), tissue homeostasis (GO:0001894), vasculature development (GO:0001944), protein phosphorylation (GO:0006468), protein dephosphorylation (GO:0006470), autophagy (GO:0006914), DNA damage response (GO:0006974), signal transduction (GO:0007165), spermatogenesis (GO:0007283), axonogenesis (GO:0007409), negative regulation of cell population proliferation (GO:0008285), response to ionizing radiation (GO:0010212), positive regulation of autophagy (GO:0010508), peptidyl-threonine phosphorylation (GO:0018107), establishment of cell polarity (GO:0030010), regulation of Wnt signaling pathway (GO:0030111), negative regulation of cell growth (GO:0030308), positive regulation of transforming growth factor beta receptor signaling pathway (GO:0030511), activation of protein kinase activity (GO:0032147), protein localization to nucleus (GO:0034504), glucose homeostasis (GO:0042593), anoikis (GO:0043276), positive thymic T cell selection (GO:0045059), protein autophosphorylation (GO:0046777), regulation of dendrite morphogenesis (GO:0048814), positive regulation of axonogenesis (GO:0050772), T cell receptor signaling pathway (GO:0050852), Golgi localization (GO:0051645), regulation of cell cycle (GO:0051726), regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051896), epithelial cell proliferation involved in prostate gland development (GO:0060767), negative regulation of epithelial cell proliferation involved in prostate gland development (GO:0060770), G1 to G0 transition (GO:0070314), cellular response to UV-B (GO:0071493), intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332), negative regulation of canonical Wnt signaling pathway (GO:0090090), dendrite extension (GO:0097484), negative regulation of cold-induced thermogenesis (GO:0120163), positive regulation of protein localization to nucleus (GO:1900182), positive regulation of vesicle transport along microtubule (GO:1901610)
GO Molecular Function (13): magnesium ion binding (GO:0000287), p53 binding (GO:0002039), protein serine/threonine kinase activity (GO:0004674), ATP binding (GO:0005524), LRR domain binding (GO:0030275), protein kinase activator activity (GO:0030295), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (11): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), mitochondrion (GO:0005739), centrosome (GO:0005813), cytosol (GO:0005829), cilium (GO:0005929), membrane (GO:0016020), extracellular exosome (GO:0070062), intracellular protein-containing complex (GO:0140535), serine/threonine protein kinase complex (GO:1902554)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Generic Transcription Pathway | 2 |
| Integration of energy metabolism | 1 |
| MTOR signalling | 1 |
| Regulation of TP53 Activity | 1 |
| FOXO-mediated transcription | 1 |
| Metabolism | 1 |
| Signal Transduction | 1 |
| RNA Polymerase II Transcription | 1 |
| Transcriptional Regulation by TP53 | 1 |
| Gene expression (Transcription) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| protein kinase activity | 3 |
| cell growth | 2 |
| protein modification process | 2 |
| negative regulation of cellular process | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasm | 2 |
| regulation of growth | 1 |
| regulation of cellular component organization | 1 |
| multicellular organismal-level homeostasis | 1 |
| anatomical structure homeostasis | 1 |
| system development | 1 |
| circulatory system development | 1 |
| phosphorylation | 1 |
| dephosphorylation | 1 |
| catabolic process | 1 |
| transmembrane transport | 1 |
| process utilizing autophagic mechanism | 1 |
| cellular response to stress | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| cell morphogenesis involved in neuron differentiation | 1 |
| neuron projection morphogenesis | 1 |
| axon development | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| response to radiation | 1 |
| autophagy | 1 |
| positive regulation of catabolic process | 1 |
| regulation of autophagy | 1 |
| protein phosphorylation | 1 |
| peptidyl-threonine modification | 1 |
| establishment or maintenance of cell polarity | 1 |
| regulation of signal transduction | 1 |
| Wnt signaling pathway | 1 |
Protein interactions and networks
STRING
4480 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| STK11 | CAB39 | Q9Y376 | 999 |
| STK11 | STRADA | Q7RTN6 | 999 |
| STK11 | AXIN1 | O15169 | 991 |
| STK11 | PTEN | P60484 | 971 |
| STK11 | CAB39L | Q9H9S4 | 963 |
| STK11 | STK11IP | Q8N1F8 | 878 |
| STK11 | KRAS | P01116 | 872 |
| STK11 | TP53 | P04637 | 853 |
| STK11 | ATM | Q13315 | 846 |
| STK11 | TSC2 | P49815 | 845 |
| STK11 | PALB2 | Q86YC2 | 843 |
| STK11 | SMAD4 | Q13485 | 840 |
| STK11 | STRADB | Q9C0K7 | 839 |
| STK11 | BRCA2 | P51587 | 831 |
| STK11 | PIK3CA | P42336 | 817 |
IntAct
200 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| STRADA | STK11 | psi-mi:“MI:0915”(physical association) | 0.960 |
| STK11 | STRADA | psi-mi:“MI:0217”(phosphorylation reaction) | 0.960 |
| STRADA | STK11 | psi-mi:“MI:0403”(colocalization) | 0.960 |
| STK11 | STRADA | psi-mi:“MI:0914”(association) | 0.960 |
| STK11 | STRADA | psi-mi:“MI:2364”(proximity) | 0.960 |
| STK11 | STRADA | psi-mi:“MI:0915”(physical association) | 0.960 |
| STK11 | CAB39 | psi-mi:“MI:0915”(physical association) | 0.950 |
| CAB39 | STK11 | psi-mi:“MI:0914”(association) | 0.950 |
| CAB39 | STK11 | psi-mi:“MI:0915”(physical association) | 0.950 |
| CAB39 | STK11 | psi-mi:“MI:2364”(proximity) | 0.950 |
| STRADB | STK11 | psi-mi:“MI:0403”(colocalization) | 0.920 |
| STRADB | STK11 | psi-mi:“MI:0915”(physical association) | 0.920 |
| STK11 | STRADB | psi-mi:“MI:0915”(physical association) | 0.920 |
| STK11 | FKBP5 | psi-mi:“MI:0914”(association) | 0.910 |
| FKBP5 | STK11 | psi-mi:“MI:0915”(physical association) | 0.910 |
| STK11 | CDC37 | psi-mi:“MI:0915”(physical association) | 0.850 |
| INO80E | TFPT | psi-mi:“MI:0914”(association) | 0.790 |
| HSP90AB1 | STK11 | psi-mi:“MI:0915”(physical association) | 0.780 |
BioGRID (466): STK11 (Biochemical Activity), SIRT1 (Affinity Capture-Western), STK11 (Affinity Capture-Western), ETV4 (Affinity Capture-Western), ETV4 (Two-hybrid), PRKAA1 (Two-hybrid), ETV4 (Biochemical Activity), PRKAA1 (Biochemical Activity), SPDEF (Two-hybrid), STK11 (Two-hybrid), CAB39 (Affinity Capture-MS), CCDC136 (Affinity Capture-MS), COPS3 (Affinity Capture-MS), COPS4 (Affinity Capture-MS), FKBP5 (Affinity Capture-MS)
ESM2 similar proteins: A0A8I5ZNK2, B1H3E1, D3ZSZ3, D4ABL6, D4AE59, E1BMN8, E2QWQ2, E9PV86, O54804, O54949, O70293, P15209, P24786, P33497, P43250, P43291, P43292, P46892, P49137, P49138, P85298, P97711, Q03351, Q0GGW5, Q15831, Q16644, Q3SYZ2, Q3UMW7, Q5N942, Q5XIS9, Q63604, Q66H84, Q6ZI44, Q75H77, Q75V57, Q7XKA8, Q7XQP4, Q7Y0B9, Q8BZ03, Q8CIW5
Diamond homologs: A2XFF4, A3B529, A6ZU08, A8WYE4, A8X0C4, B3DL84, B4J3F1, B4KYX8, B4LDJ6, B8BBT7, D4AE59, F1QGZ6, O08679, O14965, O22932, O55099, O59790, O70126, O88445, O88831, P25341, P25389, P32801, P38990, P43637, P50526, P54645, P59241, P92958, P97756, Q05512, Q0D4B2, Q0GGW5, Q0JI49, Q10SC8, Q12263, Q13131, Q14680, Q15831, Q16W24
SIGNOR signaling
69 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| STK11 | “up-regulates activity” | STK11 | phosphorylation |
| STK11 | “up-regulates activity” | MARK3 | phosphorylation |
| STK11 | “down-regulates activity” | STK11 | phosphorylation |
| STK11 | up-regulates | PRKAA2 | phosphorylation |
| STK11 | down-regulates | GSK3B | |
| STK11 | up-regulates | BRSK1 | phosphorylation |
| STK11 | up-regulates | BRSK2 | phosphorylation |
| STK11 | up-regulates | MARK1 | phosphorylation |
| STK11 | up-regulates | MARK2 | phosphorylation |
| STK11 | up-regulates | MARK4 | phosphorylation |
| STK11 | up-regulates | NUAK1 | phosphorylation |
| STK11 | up-regulates | NUAK2 | phosphorylation |
| STK11 | up-regulates | SIK1 | phosphorylation |
| STK11 | up-regulates | SIK2 | phosphorylation |
| STK11 | up-regulates | SIK3 | phosphorylation |
| STK11 | up-regulates | MELK | phosphorylation |
| STK11 | up-regulates | TP53 | phosphorylation |
| PRKCZ | “up-regulates activity” | STK11 | phosphorylation |
| STK11 | “down-regulates activity” | PTEN | phosphorylation |
| STK11 | down-regulates | PAK1 | phosphorylation |
| PRKCZ | up-regulates | STK11 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 133 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Energy dependent regulation of mTOR by LKB1-AMPK | 5 | 18.9× | 8e-04 |
| MTOR signalling | 7 | 17.9× | 4e-05 |
| RAF activation | 5 | 16.1× | 1e-03 |
| HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand | 7 | 13.0× | 2e-04 |
| Translocation of SLC2A4 (GLUT4) to the plasma membrane | 8 | 11.9× | 9e-05 |
| TP53 Regulates Metabolic Genes | 7 | 8.7× | 1e-03 |
| Transcriptional and post-translational regulation of MITF-M expression and activity | 5 | 8.6× | 7e-03 |
| Programmed Cell Death | 6 | 8.4× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| intracellular protein localization | 9 | 7.5× | 1e-03 |
| protein stabilization | 14 | 7.5× | 7e-06 |
| protein folding | 8 | 6.6× | 5e-03 |
| protein phosphorylation | 12 | 6.5× | 2e-04 |
| positive regulation of apoptotic process | 10 | 4.5× | 9e-03 |
| negative regulation of apoptotic process | 13 | 3.6× | 8e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 7 cancer types — ANSC, CEAD, CESC, CHOL, LUAD, NSCLC, WDTC.
Clinical variants and AI predictions
ClinVar
2818 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 310 |
| Likely pathogenic | 80 |
| Uncertain significance | 1041 |
| Likely benign | 578 |
| Benign | 102 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068630 | NM_000455.5(STK11):c.734+1G>A | Pathogenic |
| 1069286 | NM_000455.5(STK11):c.889_890del (p.Arg297fs) | Pathogenic |
| 1071855 | NC_000019.9:g.(?1218406)(1218509_?)del | Pathogenic |
| 1072061 | NM_000455.5(STK11):c.788T>A (p.Leu263Ter) | Pathogenic |
| 1072081 | NC_000019.9:g.(?1221107)(1227749_?)del | Pathogenic |
| 1073428 | NM_000455.5(STK11):c.354_362del (p.Tyr118_Glu121delinsTer) | Pathogenic |
| 1073558 | NM_000455.5(STK11):c.640_653del (p.Gln214fs) | Pathogenic |
| 1073837 | NC_000019.9:g.(?1206913)(1207212_?)del | Pathogenic |
| 1073838 | NC_000019.9:g.(?1206903)(1207212_?)del | Pathogenic |
| 1073839 | NC_000019.9:g.(?1220366)(1220510_?)del | Pathogenic |
| 1073840 | NC_000019.9:g.(?1218406)(1219422_?)del | Pathogenic |
| 1073934 | NM_000455.5(STK11):c.332_333insG (p.Ile111fs) | Pathogenic |
| 1075652 | NM_000455.5(STK11):c.291-1G>C | Pathogenic |
| 1075653 | NM_000455.5(STK11):c.334C>T (p.Gln112Ter) | Pathogenic |
| 1075654 | NM_000455.5(STK11):c.464+1dup | Pathogenic |
| 1075763 | NM_000455.5(STK11):c.608_627del (p.Pro203fs) | Pathogenic |
| 1075905 | NC_000019.9:g.(?1206907)(1226652_?)del | Pathogenic |
| 1076021 | NM_000455.5(STK11):c.145dup (p.Tyr49fs) | Pathogenic |
| 1184620 | NM_000455.5(STK11):c.812del (p.Ser271fs) | Pathogenic |
| 1297689 | NM_000455.5(STK11):c.921-12G>A | Pathogenic |
| 1342166 | NM_000455.5(STK11):c.735-6A>G | Pathogenic |
| 1350425 | NC_000019.9:g.(?1206913)(1219422_?)del | Pathogenic |
| 1359304 | NM_000455.5(STK11):c.841_842dup (p.Leu282fs) | Pathogenic |
| 1359873 | NM_000455.5(STK11):c.464+1G>T | Pathogenic |
| 1360522 | NM_000455.5(STK11):c.597+2T>A | Pathogenic |
| 1370818 | NM_000455.5(STK11):c.290+1G>C | Pathogenic |
| 1376969 | NM_000455.5(STK11):c.583del (p.Leu195fs) | Pathogenic |
| 1378041 | NM_000455.5(STK11):c.19C>T (p.Gln7Ter) | Pathogenic |
| 1379620 | NM_000455.5(STK11):c.792_793insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNGCTCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCACAGTGCTGTGATTACAGGCGTGAGCCACCGCGCCCGGCCTACAAGTTGTTT (p.Glu265delinsPhePhePhePhePhePheXaaXaaXaaXaaAlaLeuLeuThrSerTer) | Pathogenic |
| 1404101 | NM_000455.5(STK11):c.669_670del (p.Glu223fs) | Pathogenic |
SpliceAI
2087 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 19:1207200:AGAA:A | donor_gain | 1.0000 |
| 19:1207201:GAA:G | donor_gain | 1.0000 |
| 19:1207201:GAAG:G | donor_gain | 1.0000 |
| 19:1207202:AA:A | donor_gain | 1.0000 |
| 19:1207204:G:GG | donor_gain | 1.0000 |
| 19:1218411:TCCCA:T | acceptor_loss | 1.0000 |
| 19:1218412:CCCAG:C | acceptor_loss | 1.0000 |
| 19:1218413:CCAG:C | acceptor_loss | 1.0000 |
| 19:1218414:CAGGG:C | acceptor_loss | 1.0000 |
| 19:1218415:A:AG | acceptor_gain | 1.0000 |
| 19:1218415:A:AT | acceptor_loss | 1.0000 |
| 19:1218415:AG:A | acceptor_gain | 1.0000 |
| 19:1218415:AGG:A | acceptor_gain | 1.0000 |
| 19:1218416:G:GG | acceptor_gain | 1.0000 |
| 19:1218416:GG:G | acceptor_gain | 1.0000 |
| 19:1218416:GGG:G | acceptor_gain | 1.0000 |
| 19:1218416:GGGA:G | acceptor_gain | 1.0000 |
| 19:1218416:GGGAA:G | acceptor_gain | 1.0000 |
| 19:1220368:CGCA:C | acceptor_loss | 1.0000 |
| 19:1220369:GCA:G | acceptor_loss | 1.0000 |
| 19:1220370:CAGGT:C | acceptor_loss | 1.0000 |
| 19:1220372:G:GT | acceptor_loss | 1.0000 |
| 19:1220470:G:GA | donor_gain | 1.0000 |
| 19:1220507:T:A | donor_loss | 1.0000 |
| 19:1220714:CCCT:C | donor_gain | 1.0000 |
| 19:1220715:CCT:C | donor_gain | 1.0000 |
| 19:1220716:CT:C | donor_gain | 1.0000 |
| 19:1220718:G:GG | donor_gain | 1.0000 |
| 19:1220718:GT:G | donor_loss | 1.0000 |
| 19:1220719:T:G | donor_loss | 1.0000 |
AlphaMissense
2859 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:1207062:T:C | L50P | 1.000 |
| 19:1207067:G:A | G52R | 1.000 |
| 19:1207067:G:C | G52R | 1.000 |
| 19:1207067:G:T | G52W | 1.000 |
| 19:1207068:G:A | G52E | 1.000 |
| 19:1207079:G:A | G56R | 1.000 |
| 19:1207079:G:C | G56R | 1.000 |
| 19:1207080:G:A | G56E | 1.000 |
| 19:1207085:G:A | G58S | 1.000 |
| 19:1207085:G:C | G58R | 1.000 |
| 19:1207085:G:T | G58C | 1.000 |
| 19:1207086:G:A | G58D | 1.000 |
| 19:1207094:G:C | G61R | 1.000 |
| 19:1207095:G:A | G61D | 1.000 |
| 19:1207100:G:A | V63M | 1.000 |
| 19:1207103:A:G | K64E | 1.000 |
| 19:1207105:G:C | K64N | 1.000 |
| 19:1207105:G:T | K64N | 1.000 |
| 19:1207113:T:C | L67P | 1.000 |
| 19:1207134:G:C | R74T | 1.000 |
| 19:1207134:G:T | R74M | 1.000 |
| 19:1207135:G:C | R74S | 1.000 |
| 19:1207135:G:T | R74S | 1.000 |
| 19:1207140:C:A | A76D | 1.000 |
| 19:1207143:T:A | V77D | 1.000 |
| 19:1207145:A:C | K78Q | 1.000 |
| 19:1207145:A:G | K78E | 1.000 |
| 19:1207147:G:C | K78N | 1.000 |
| 19:1207147:G:T | K78N | 1.000 |
| 19:1207149:T:A | I79N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000190042 (19:1213744 G>A), RS1000210972 (19:1222536 C>A,T), RS1000261203 (19:1218272 C>T), RS1000284683 (19:1213585 C>T), RS1000508153 (19:1207906 C>T), RS1000619039 (19:1212685 T>C), RS1000726326 (19:1212011 G>A), RS1000755581 (19:1216785 T>G), RS1000798577 (19:1211831 A>T), RS1000831724 (19:1227080 G>A), RS1000885403 (19:1224210 G>A,T), RS1000953655 (19:1224682 C>T), RS1000988286 (19:1226910 G>A), RS1001000431 (19:1217292 C>T), RS1001026620 (19:1207766 C>T)
Disease associations
OMIM: gene MIM:602216 | disease phenotypes: MIM:175200, MIM:155600, MIM:273300, MIM:260350, MIM:167000, MIM:175100, MIM:613659, MIM:268210, MIM:131100, MIM:612555, MIM:617146
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Peutz-Jeghers syndrome | Definitive | Autosomal dominant |
| familial pancreatic carcinoma | Definitive | Autosomal dominant |
| familial ovarian cancer | No Known Disease Relationship | Unknown |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Peutz-Jeghers syndrome | Definitive | AD |
| familial ovarian cancer | No Known Disease Relationship | AD |
Mondo (29): Peutz-Jeghers syndrome (MONDO:0008280), melanoma, cutaneous malignant, susceptibility to, 1 (MONDO:0007963), hereditary neoplastic syndrome (MONDO:0015356), generalized juvenile polyposis/juvenile polyposis coli (MONDO:0008276), colon carcinoma (MONDO:0002032), testicular germ cell tumor (MONDO:0010108), hereditary breast ovarian cancer syndrome (MONDO:0003582), breast cancer (MONDO:0007254), breast carcinoma (MONDO:0004989), exocrine pancreatic carcinoma (MONDO:0005192), familial pancreatic carcinoma (MONDO:0015278), familial ovarian cancer (MONDO:0016248), testicular cancer (MONDO:0005447), ovarian cancer (MONDO:0008170), familial adenomatous polyposis 1 (MONDO:0021056)
Orphanet (14): Peutz-Jeghers syndrome (Orphanet:2869), Inherited cancer-predisposing syndrome (Orphanet:140162), Familial melanoma (Orphanet:618), Generalized juvenile polyposis/juvenile polyposis coli (Orphanet:329971), Germ cell tumor of testis (Orphanet:363504), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), Familial pancreatic carcinoma (Orphanet:1333), Rare carcinoma of pancreas (Orphanet:217074), Rare ovarian cancer (Orphanet:213500), Hepatoblastoma (Orphanet:449), Embryonal rhabdomyosarcoma (Orphanet:99757), Multiple endocrine neoplasia type 1 (Orphanet:652), OBSOLETE: Familial ovarian cancer (Orphanet:213517), NON RARE IN EUROPE: Melanoma (Orphanet:411533)
HPO phenotypes
69 total (30 of 69 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000027 | Azoospermia |
| HP:0000069 | Abnormality of the ureter |
| HP:0000138 | Ovarian cyst |
| HP:0000366 | Abnormality of the nose |
| HP:0000478 | Abnormality of the eye |
| HP:0000771 | Gynecomastia |
| HP:0001003 | Multiple lentigines |
| HP:0001034 | Hypermelanotic macule |
| HP:0001054 | Numerous nevi |
| HP:0001062 | Atypical nevus |
| HP:0001074 | Atypical nevi in non-sun exposed areas |
| HP:0001080 | Biliary tract abnormality |
| HP:0001217 | Clubbing |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001891 | Iron deficiency anemia |
| HP:0001903 | Anemia |
| HP:0002013 | Vomiting |
| HP:0002027 | Abdominal pain |
| HP:0002035 | Rectal prolapse |
| HP:0002086 | Abnormality of the respiratory system |
| HP:0002239 | Gastrointestinal hemorrhage |
| HP:0002576 | Intussusception |
| HP:0002584 | Intestinal bleeding |
| HP:0002664 | Neoplasm |
| HP:0002672 | Gastrointestinal carcinoma |
| HP:0002894 | Neoplasm of the pancreas |
| HP:0002898 | Embryonal neoplasm |
| HP:0003002 | Breast carcinoma |
| HP:0003581 | Adult onset |
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001282_4 | Psychosis in Alzheimer’s disease | 8.000000e-06 |
| GCST004131_43 | Inflammatory bowel disease | 5.000000e-17 |
| GCST004132_20 | Crohn’s disease | 1.000000e-20 |
| GCST004627_181 | Lymphocyte count | 6.000000e-10 |
| GCST005537_44 | Chronic inflammatory diseases (ankylosing spondylitis, Crohn’s disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) | 4.000000e-09 |
| GCST007995_8 | Asthma (childhood onset) | 2.000000e-08 |
| GCST010320_10 | PR interval | 3.000000e-11 |
| GCST010321_64 | PR interval | 7.000000e-11 |
| GCST012202_5 | Distal/Left-sided colorectal cancer | 2.000000e-08 |
| GCST90002388_29 | Lymphocyte count | 8.000000e-22 |
| GCST90002389_257 | Lymphocyte percentage of white cells | 4.000000e-21 |
| GCST90002399_213 | Neutrophil percentage of white cells | 1.000000e-14 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005940 | psychotic symptoms |
| EFO:0004587 | lymphocyte count |
| EFO:0004462 | PR interval |
| EFO:0007993 | lymphocyte percentage of leukocytes |
| EFO:0007990 | neutrophil percentage of leukocytes |
MeSH disease descriptors (12)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001932 | Brain Neoplasms | C04.588.614.250.195; C10.228.140.211; C10.551.240.250 |
| D002294 | Carcinoma, Squamous Cell | C04.557.470.200.400; C04.557.470.700.400 |
| D018197 | Hepatoblastoma | C04.557.435.380 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D008545 | Melanoma | C04.557.465.625.650.510; C04.557.580.625.650.510; C04.557.665.510; C04.588.805.377; C17.800.882.445 |
| D018761 | Multiple Endocrine Neoplasia Type 1 | C04.588.322.400.500; C04.651.600.500; C04.700.630.500; C16.320.700.630.500; C19.344.400.500 |
| D009386 | Neoplastic Syndromes, Hereditary | C04.700; C16.320.700 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
| D010580 | Peutz-Jeghers Syndrome | C04.700.633; C06.405.469.578.750; C16.320.700.667; C17.800.621.430.530.550.625 |
| D013736 | Testicular Neoplasms | C04.588.322.762; C04.588.945.440.915; C12.100.500.260.937; C12.200.294.260.937; C12.200.758.409.937; C12.900.619.937; C19.344.762; C19.391.829.782 |
| C535837 | Pancreatic carcinoma, familial (supp.) | |
| C563236 | Testicular Germ Cell Tumor (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3885534 (PROTEIN COMPLEX), CHEMBL5606 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
17 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 116,890 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL2035187 | PACRITINIB | 4 | 3,345 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL2103840 | DINACICLIB | 3 | 2,257 |
| CHEMBL522892 | DOVITINIB | 3 | 4,944 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL91829 | RUBOXISTAURIN | 3 | 77 |
| CHEMBL1231124 | AZD-1480 | 2 | 1,576 |
| CHEMBL1721885 | SU-014813 | 2 | 363 |
| CHEMBL475251 | R-406 | 2 | 762 |
| CHEMBL572878 | TOZASERTIB | 2 | 2,998 |
| CHEMBL1084546 | PF-00562271 | 1 | 399 |
| CHEMBL1908397 | KW-2449 | 1 | 622 |
| CHEMBL3128043 | PF-03758309 | 1 | 233 |
| CHEMBL3545085 | XL-228 | 1 | 936 |
Clinical evidence (CIViC)
Drug × variant × indication: 11 predictive associations from 12 curated evidence items; also 2 predisposing, 1 prognostic.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| STK11 Mutation | Vistusertib | Lung Non-small Cell Carcinoma | Sensitivity/Response | CIViC B | EID12514 |
| STK11 Mutation | Chemoradiotherapy | Lung Non-small Cell Carcinoma | Sensitivity/Response | CIViC B | EID12911 |
| STK11 Mutation | Cisplatin/Pembrolizumab/Pemetrexed Regimen | Lung Non-small Cell Carcinoma | Resistance | CIViC B | EID12338 |
| STK11 Mutation | Radiation Therapy | Lung Non-small Cell Carcinoma | Resistance | CIViC B | EID12912 |
| STK11 Mutation | Nivolumab + Atezolizumab + Pembrolizumab | Lung Adenocarcinoma | Resistance | CIViC B | EID6441 |
| STK11 D194E | Everolimus | Pancreatic Cancer | Sensitivity/Response | CIViC C | EID1617 |
| STK11 Loss | Sirolimus | Peutz-Jeghers Syndrome | Sensitivity/Response | CIViC D | EID1618 +1 |
| STK11 Loss | Roflumilast | Pancreatic Ductal Adenocarcinoma | Sensitivity/Response | CIViC D | EID12555 |
| STK11 Loss | Everolimus + Sirolimus | Lung Non-small Cell Carcinoma | Sensitivity/Response | CIViC D | EID1620 |
| STK11 Underexpression | SB202190 | Prostate Cancer | Sensitivity/Response | CIViC D | EID751 |
| STK11 Loss | Selumetinib + Docetaxel | Lung Non-small Cell Carcinoma | Resistance | CIViC D | EID1144 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — LKB subfamily
Binding affinities (BindingDB)
6 measured of 6 human assays (6 total across all organisms); most potent 6 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| Staurosporine | KD | 1.7 nM |
| PKC-412 | KD | 190 nM |
| (3Z)-4-amino-5-fluoro-3-[5-(4-methylpiperazino)-1,3-dihydrobenzimidazol-2-ylidene]carbostyril | KD | 520 nM |
| N-[4-({4-[(3-methyl-1H-pyrazol-5-yl)amino]-6-(4-methylpiperazin-1-yl)pyrimidin-2-yl}sulfanyl)phenyl]cyclopropanecarboxamide | KD | 1100 nM |
| 5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamide | KD | 2600 nM |
| N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | KD | 3500 nM |
ChEMBL bioactivities
38 potent at pChembl≥5 of 38 total, top 28 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.52 | Kd | 3 | nM | PACRITINIB |
| 7.82 | Kd | 15.19 | nM | CHEMBL5653589 |
| 7.75 | Kd | 18 | nM | NINTEDANIB |
| 7.74 | ED50 | 18.01 | nM | CHEMBL5653589 |
| 7.42 | Kd | 38 | nM | SUNITINIB |
| 7.31 | IC50 | 48.7 | nM | STAUROSPORINE |
| 7.24 | Kd | 57 | nM | LESTAURTINIB |
| 7.21 | Kd | 61 | nM | STAUROSPORINE |
| 7.16 | IC50 | 68.5 | nM | STAUROSPORINE |
| 7.15 | IC50 | 70.9 | nM | STAUROSPORINE |
| 6.62 | Kd | 240 | nM | KW-2449 |
| 6.51 | Kd | 310 | nM | FEDRATINIB |
| 6.46 | Kd | 350 | nM | MIDOSTAURIN |
| 6.44 | Kd | 360 | nM | SU-014813 |
| 6.42 | Kd | 380 | nM | CHEMBL516312 |
| 6.36 | Kd | 434 | nM | PF-03758309 |
| 6.30 | Kd | 497 | nM | DINACICLIB |
| 6.20 | Kd | 626 | nM | PF-00562271 |
| 6.15 | Kd | 714 | nM | AZD-1480 |
| 5.89 | Kd | 1300 | nM | TOZASERTIB |
| 5.70 | Kd | 2013 | nM | CHEMBL3752910 |
| 5.62 | ED50 | 2386 | nM | CHEMBL3752910 |
| 5.58 | Kd | 2600 | nM | PHA-665752 |
| 5.51 | Kd | 3077 | nM | XL-228 |
| 5.47 | Kd | 3400 | nM | R-406 |
| 5.43 | Kd | 3700 | nM | DOVITINIB |
| 5.36 | Kd | 4375 | nM | CHEMBL3990456 |
| 5.23 | Kd | 5900 | nM | RUBOXISTAURIN |
PubChem BioAssay actives
36 with measured affinity, of 963 total; 23 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| Pacritinib | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0030 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149508: Binding affinity to human STK11 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0152 | uM |
| methyl 2-hydroxy-3-[N-[4-[methyl-[2-(4-methylpiperazin-1-yl)acetyl]amino]phenyl]-C-phenylcarbonimidoyl]-1H-indole-6-carboxylate | 624798: Binding constant for LKB1 kinase domain | kd | 0.0180 | uM |
| Sunitinib | 435909: Binding constant for full-length LKB1 | kd | 0.0380 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1715295: Inhibition of human LKB1 using LSNLYHQGKFLQTFCGSPLYRRR as substrate by [gamma-33P]-ATP assay | ic50 | 0.0487 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 507590: Binding affinity to LKB1 | kd | 0.0570 | uM |
| [4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone | 624798: Binding constant for LKB1 kinase domain | kd | 0.2400 | uM |
| Fedratinib | 624798: Binding constant for LKB1 kinase domain | kd | 0.3100 | uM |
| Midostaurin | 435909: Binding constant for full-length LKB1 | kd | 0.3500 | uM |
| 5-[(Z)-(5-fluoro-2-oxo-1H-indol-3-ylidene)methyl]-N-[(2S)-2-hydroxy-3-morpholin-4-ylpropyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | 435909: Binding constant for full-length LKB1 | kd | 0.3600 | uM |
| N-[5-(4-cyanophenyl)-1H-pyrrolo[2,3-b]pyridin-3-yl]pyridine-3-carboxamide | 389033: Binding affinity to human LKB1 | kd | 0.3800 | uM |
| N-[(1S)-2-(dimethylamino)-1-phenylethyl]-6,6-dimethyl-3-[(2-methylthieno[3,2-d]pyrimidin-4-yl)amino]-1,4-dihydropyrrolo[3,4-d]pyrazole-5-carboxamide | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.4340 | uM |
| 2-[(2S)-1-[3-ethyl-7-[(1-oxidopyridin-1-ium-3-yl)methylamino]pyrazolo[1,5-a]pyrimidin-5-yl]piperidin-2-yl]ethanol | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.4970 | uM |
| N-methyl-N-[3-[[[2-[(2-oxo-1,3-dihydroindol-5-yl)amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]methyl]-2-pyridinyl]methanesulfonamide | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.6260 | uM |
| 5-chloro-2-N-[(1S)-1-(5-fluoropyrimidin-2-yl)ethyl]-4-N-(5-methyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.7140 | uM |
| N-[4-[4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]sulfanylphenyl]cyclopropanecarboxamide | 435909: Binding constant for full-length LKB1 | kd | 1.3000 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149508: Binding affinity to human STK11 incubated for 45 mins by Kinobead based pull down assay | kd | 2.0130 | uM |
| (3Z)-5-[(2,6-dichlorophenyl)methylsulfonyl]-3-[[3,5-dimethyl-4-[(2R)-2-(pyrrolidin-1-ylmethyl)pyrrolidine-1-carbonyl]-1H-pyrrol-2-yl]methylidene]-1H-indol-2-one | 624798: Binding constant for LKB1 kinase domain | kd | 2.6000 | uM |
| 4-N-(5-cyclopropyl-1H-pyrazol-3-yl)-6-(4-methylpiperazin-1-yl)-2-N-[(3-propan-2-yl-1,2-oxazol-5-yl)methyl]pyrimidine-2,4-diamine | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 3.0770 | uM |
| 6-[[5-fluoro-2-(3,4,5-trimethoxyanilino)pyrimidin-4-yl]amino]-2,2-dimethyl-4H-pyrido[3,2-b][1,4]oxazin-3-one | 624798: Binding constant for LKB1 kinase domain | kd | 3.4000 | uM |
| 4-amino-5-fluoro-3-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-quinolin-2-one | 435909: Binding constant for full-length LKB1 | kd | 3.7000 | uM |
| 2-amino-2-cyclohexyl-N-[2-(1-methylpyrazol-4-yl)-9-oxo-3,10,11-triazatricyclo[6.4.1.04,13]trideca-1,4,6,8(13),11-pentaen-6-yl]acetamide | 1425178: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 4.3750 | uM |
| (18S)-18-[(dimethylamino)methyl]-17-oxa-4,14,21-triazahexacyclo[19.6.1.17,14.02,6.08,13.022,27]nonacosa-1(28),2(6),7(29),8,10,12,22,24,26-nonaene-3,5-dione | 624798: Binding constant for LKB1 kinase domain | kd | 5.9000 | uM |
CTD chemical–gene interactions
73 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Resveratrol | increases phosphorylation, affects binding, increases reaction, decreases acetylation, increases expression (+6 more) | 6 |
| STO 609 | affects response to substance, decreases reaction, increases phosphorylation | 2 |
| dorsomorphin | decreases phosphorylation, decreases reaction, increases phosphorylation | 2 |
| (+)-JQ1 compound | increases expression, increases response to substance, increases activity, increases cleavage, decreases expression (+1 more) | 2 |
| Cisplatin | affects binding, increases reaction, increases degradation, increases phosphorylation, decreases reaction (+2 more) | 2 |
| Metformin | decreases phosphorylation, decreases reaction, affects reaction, increases phosphorylation | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| geldanamycin | decreases expression, decreases phosphorylation, decreases reaction | 1 |
| thymoquinone | decreases phosphorylation, decreases reaction | 1 |
| triphenyl phosphate | affects expression | 1 |
| 5-methyltetrahydrofolate | decreases phosphorylation, decreases reaction | 1 |
| bisphenol A | increases methylation, affects cotreatment | 1 |
| beta-ionone | increases phosphorylation, affects reaction, decreases expression, increases cleavage, increases lipidation | 1 |
| deoxypodophyllotoxin | increases phosphorylation | 1 |
| lonidamine | increases phosphorylation | 1 |
| bromopyruvate | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| 3-aminobenzamide | decreases reaction, increases phosphorylation | 1 |
| ginsenoside Rg2 | decreases reaction, increases phosphorylation | 1 |
| AICA ribonucleotide | decreases phosphorylation, decreases reaction | 1 |
| 2-chloroethyl ethyl sulfide | decreases stability, increases degradation, increases expression, decreases reaction, decreases expression (+1 more) | 1 |
| puag-haad | increases phosphorylation | 1 |
| bafilomycin A1 | decreases expression, decreases reaction | 1 |
| gastrodin | increases phosphorylation | 1 |
| rubimaillin | increases phosphorylation | 1 |
| N-methylisoindigotin | decreases phosphorylation | 1 |
| ginsenoside Re | increases phosphorylation | 1 |
| N-(2-(4-bromocinnamylamino)ethyl)-5-isoquinolinesulfonamide | decreases phosphorylation, decreases reaction | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
ChEMBL screening assays
244 unique, capped per target: 244 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2014944 | Binding | Inhibition of LKB1-MO25a-STRADa at 10 uM | Structure-activity relationship study of beta-carboline derivatives as haspin kinase inhibitors. — Bioorg Med Chem Lett |
Cellosaurus cell lines
2,031 cell lines: 2,027 cancer cell line, 2 transformed cell line, 1 hybrid cell line, 1 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0013 | MOLT-4 | Cancer cell line | Male |
| CVCL_0023 | A-549 | Cancer cell line | Male |
| CVCL_0105 | DU145 | Cancer cell line | Male |
| CVCL_0459 | NCI-H460 | Cancer cell line | Male |
| CVCL_0C87 | MOCHA | Cancer cell line | Male |
| CVCL_1150 | CTV-1 | Cancer cell line | Male |
| CVCL_1475 | NCI-H1563 | Cancer cell line | Male |
| CVCL_1547 | NCI-H23 | Cancer cell line | Male |
| CVCL_1968 | BM-1604 | Cancer cell line | Male |
| CVCL_1D09 | HROBML03 | Cancer cell line | Male |
Clinical trials (associated diseases)
312 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03781050 | PHASE4 | UNKNOWN | Efficacy of Rapamycin (Sirolimus) in the Treatment of Peutz-Jeghers Syndrome |
| NCT06001476 | PHASE4 | UNKNOWN | Cold Snare Polypectomy for Small Bowel Polyps in Patients With Peutz-Jeghers Syndrome |
| NCT01169220 | PHASE4 | COMPLETED | Bowel Preparation for Inpatient Colonoscopy |
| NCT01170754 | PHASE4 | COMPLETED | Miralax (PEG 3350) vs. Golytely as Bowel Preparation for Screening Colonoscopy |
| NCT02052557 | PHASE4 | COMPLETED | The Effect of Exparel on Post Operative Pain and Narcotic Use After Colon Surgery |
| NCT02078726 | PHASE4 | COMPLETED | Glucagon Use in Colonoscopies |
| NCT02231203 | PHASE4 | COMPLETED | Effect of Omega-3 Fatty Acids on the Perioperative Immune Response and Erythrocyte Function |
| NCT02314871 | PHASE4 | COMPLETED | Effects of Different Types of Perioperative Analgesia on Minimal Residual Disease Development After Colon Cancer Surgery |
| NCT02746432 | PHASE4 | UNKNOWN | Insulin Therapy Reduce Post-Operative Inflammatory Response After Curative Colorectal Cancer Resection: Randomization Controlled Trial |
| NCT02887365 | PHASE4 | UNKNOWN | A Phase II Study of Tegafur-Uracil as Maintenance Chemotherapy in Patients With Stage II of Colon Cancer |
| NCT02937506 | PHASE4 | COMPLETED | Patient Satisfaction With Propofol for Out Patient Colonoscopy |
| NCT02958566 | PHASE4 | UNKNOWN | Multimodal Narcotic Limited Perioperative Pain Control With Colorectal Surgery |
| NCT04269369 | PHASE4 | UNKNOWN | Implementation of Pre-emptive Geno- and Phenotyping in 5-Fluorouracil- or Capecitabine-treated Patients |
| NCT04311099 | PHASE4 | COMPLETED | Optimal Peripheral Nerve Block After Minimally Invasive Colon Surgery |
| NCT04709770 | PHASE4 | UNKNOWN | Low-volume vs High-volume Polyethylene Glycol Based Bowel Preparation for Colonoscopy in People Receiving Hemodialysis |
| NCT05250648 | PHASE4 | RECRUITING | Clinical Trial on HIPEC With Mitomycin C in Colon Cancer Peritoneal Metastases (GECOP-MMC) |
| NCT02000089 | PHASE3 | RECRUITING | The Cancer of the Pancreas Screening-5 CAPS5)Study |
| NCT00002968 | PHASE3 | COMPLETED | Edrecolomab in Treating Patients With Stage II Colon Cancer |
| NCT00003835 | PHASE3 | COMPLETED | Combination Chemotherapy in Treating Patients With Stage III Colon Cancer |
| NCT00003873 | PHASE3 | COMPLETED | Fluorouracil With or Without Eniluracil in Treating Patients With Advanced Colorectal Cancer |
| NCT00004931 | PHASE3 | COMPLETED | Fluorouracil Plus Leucovorin With or Without Oxaliplatin in Treating Patients With Stage II or Stage III Colon Cancer |
| NCT00005036 | PHASE3 | COMPLETED | Irinotecan Compared With Combination Chemotherapy in Treating Patients With Advanced Colorectal Cancer |
| NCT00005094 | PHASE3 | COMPLETED | Celecoxib to Prevent Colorectal Cancer in Patients Who Have Undergone Surgery to Remove Polyps |
| NCT00025337 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without Bevacizumab Compared With Bevacizumab Alone in Treating Patients With Advanced or Metastatic Colorectal Cancer That Has Been Previously Treated |
| NCT00070122 | PHASE3 | TERMINATED | Combination Chemotherapy and Bevacizumab in Treating Patients With Locally Advanced, Metastatic, or Recurrent Colorectal Cancer |
| NCT00079274 | PHASE3 | COMPLETED | Comparison of Combination Chemotherapy Regimens With or Without Cetuximab in Treating Patients Who Have Undergone Surgery For Stage III Colon Cancer |
| NCT00096278 | PHASE3 | COMPLETED | Fluorouracil, Leucovorin, and Oxaliplatin With or Without Bevacizumab in Treating Patients Who Have Undergone Surgery for Stage II or Stage III Colon Cancer |
| NCT00188305 | PHASE3 | COMPLETED | A Randomized Trial of Cancer Risk and Health Education in Relatives of Colorectal Cancer Patients |
| NCT00195585 | PHASE3 | COMPLETED | Study Evaluating Isovorin in Colon Cancer |
| NCT00217737 | PHASE3 | ACTIVE_NOT_RECRUITING | Oxaliplatin, Leucovorin, and Fluorouracil With or Without Bevacizumab in Treating Patients Who Have Undergone Surgery for Stage II Colon Cancer |
| NCT00230646 | PHASE3 | COMPLETED | Promoting Physical Activity After Colorectal Cancer |
| NCT00309530 | PHASE3 | COMPLETED | Randomized Study on Adjuvant Chemotherapy and Adjuvant Chemo-Immunotherapy in Colon Carcinoma Dukes C |
| NCT00309543 | PHASE3 | COMPLETED | Randomized Trial on Adjuvant Chemotherapy in Colon Carcinoma Dukes B |
| NCT00337389 | PHASE3 | UNKNOWN | Phase III Randomized Study of 5-FU, CoFactor, and Avastin vs. 5-FU, LV and Avastin for First-Line Colorectal Cancer. |
| NCT00467922 | PHASE3 | COMPLETED | An Assessment of Goal-Directed Intraoperative Fluid Management in Hand Assisted Laparoscopic Colectomy |
| NCT00499369 | PHASE3 | TERMINATED | Irinotecan and Cetuximab With or Without Bevacizumab in Treating Patients With Metastatic Colorectal Cancer That Progressed During First-Line Therapy |
| NCT00509444 | PHASE3 | COMPLETED | Cancer Prevention and Treatment Among African American Older Adults: Treatment Trial |
| NCT00646607 | PHASE3 | COMPLETED | FOLFOX-4 3months Versus 6 Months and Bevacizumab as Adjuvant Therapy for Patients With Stage II/III Colon Cancer |
| NCT00687830 | PHASE3 | COMPLETED | Efficacy of Morning-only Bowel Preparation for Afternoon Colonoscopy. |
| NCT00756548 | PHASE3 | COMPLETED | BLI850-302: BLI850 vs an Approved Active Control Bowel Preparation in Adult Subjects Undergoing Colonoscopy |
Related Atlas pages
- Associated diseases: Peutz-Jeghers syndrome, familial ovarian cancer, familial pancreatic carcinoma, lung adenocarcinoma, malignant pancreatic neoplasm, pancreatic ductal adenocarcinoma, prostate carcinoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Everolimus, Sirolimus, Roflumilast
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): ankylosing spondylitis, arthrogryposis, distal, with impaired proprioception and touch, bile duct cancer, brain cancer, breast carcinoma, breast-ovarian cancer, familial, susceptibility to, 2, childhood neoplasm, childhood onset asthma, colon carcinoma, Crohn disease, embryonal rhabdomyosarcoma, endometrial carcinoma, exocrine pancreatic carcinoma, familial adenomatous polyposis 1, familial ovarian cancer, familial pancreatic carcinoma, gastric cancer, gastrointestinal polyp, generalized juvenile polyposis/juvenile polyposis coli, hepatoblastoma, hereditary breast ovarian cancer syndrome, hereditary neoplastic syndrome, inflammatory bowel disease, lung adenocarcinoma, malignant pancreatic neoplasm, melanoma, melanoma, cutaneous malignant, susceptibility to, 1, multiple endocrine neoplasia type 1, non-small cell lung carcinoma, ovarian cancer, pancreatic ductal adenocarcinoma, Peutz-Jeghers syndrome, prostate cancer, prostate carcinoma, psoriasis, sclerosing cholangitis, squamous cell carcinoma, squamous cell lung carcinoma, testicular cancer, testicular germ cell tumor, ulcerative colitis