STX18-IT1

Summary

STX18-IT1 (STX18 intronic transcript 1, HGNC:41415) is a long non-coding RNA gene on chromosome 4p16.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41415
Approved symbol	STX18-IT1
Name	STX18 intronic transcript 1
Location	4p16.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248221
Ensembl biotype	lncRNA
Entrez	104472519
RNAcentral	URS0000470E21 — lncRNA, 542 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000515487

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000515487 — 4 exons

Exon	Start	End
ENSE00002018933	4477884	4477997
ENSE00002039995	4481605	4481700
ENSE00002059734	4478667	4478974
ENSE00002071893	4476121	4476144

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 73.69.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	73.69	silver quality
sural nerve	UBERON:0015488	69.01	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.36	gold quality
tonsil	UBERON:0002372	61.06	silver quality
bone marrow	UBERON:0002371	59.69	silver quality
skeletal muscle tissue	UBERON:0001134	59.46	silver quality
liver	UBERON:0002107	58.14	gold quality
corpus callosum	UBERON:0002336	57.87	gold quality
calcaneal tendon	UBERON:0003701	57.04	gold quality
urinary bladder	UBERON:0001255	55.06	silver quality
islet of Langerhans	UBERON:0000006	54.10	gold quality
blood	UBERON:0000178	52.78	gold quality
placenta	UBERON:0001987	52.44	gold quality
kidney	UBERON:0002113	52.40	gold quality
monocyte	CL:0000576	52.23	gold quality
endometrium	UBERON:0001295	52.23	gold quality
muscle of leg	UBERON:0001383	51.63	gold quality
left coronary artery	UBERON:0001626	51.35	gold quality
adrenal tissue	UBERON:0018303	50.96	gold quality
superior frontal gyrus	UBERON:0002661	50.37	gold quality
myometrium	UBERON:0001296	50.24	gold quality
gastrocnemius	UBERON:0001388	49.37	silver quality
cortex of kidney	UBERON:0001225	49.24	silver quality
adult mammalian kidney	UBERON:0000082	48.99	gold quality
anterior cingulate cortex	UBERON:0009835	48.87	gold quality
adrenal gland	UBERON:0002369	47.82	silver quality
pancreas	UBERON:0001264	47.46	gold quality
stomach	UBERON:0000945	47.17	gold quality
heart	UBERON:0000948	46.63	gold quality
right lobe of thyroid gland	UBERON:0001119	46.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.