SUCLA2-AS1

Summary

SUCLA2-AS1 (SUCLA2 antisense RNA 1, HGNC:39965) is a long non-coding RNA gene on chromosome 13q14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39965
Approved symbol	SUCLA2-AS1
Name	SUCLA2 antisense RNA 1
Location	13q14.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000227848
Ensembl biotype	lncRNA
Entrez	101929410
RNAcentral	URS0002853B5E — lncRNA, 675 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000423869

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000423869 — 2 exons

Exon	Start	End
ENSE00004272167	48001389	48001822
ENSE00004272168	48002435	48002620

Expression profiles

Bgee: expression breadth ubiquitous, 150 present calls, max score 82.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3726 / max 54.2742, expressed in 133 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
135034	0.3726	133

Top tissues by expression

238 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.77	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.83	silver quality
sural nerve	UBERON:0015488	79.59	gold quality
ventricular zone	UBERON:0003053	71.07	gold quality
mucosa of transverse colon	UBERON:0004991	67.67	gold quality
cortical plate	UBERON:0005343	67.66	gold quality
ganglionic eminence	UBERON:0004023	65.10	gold quality
prefrontal cortex	UBERON:0000451	64.50	gold quality
islet of Langerhans	UBERON:0000006	63.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	62.52	gold quality
nucleus accumbens	UBERON:0001882	61.71	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.05	gold quality
anterior cingulate cortex	UBERON:0009835	60.50	gold quality
putamen	UBERON:0001874	60.46	gold quality
granulocyte	CL:0000094	60.28	gold quality
right adrenal gland	UBERON:0001233	59.98	gold quality
right adrenal gland cortex	UBERON:0035827	59.60	gold quality
right frontal lobe	UBERON:0002810	59.41	gold quality
caudate nucleus	UBERON:0001873	59.34	gold quality
adenohypophysis	UBERON:0002196	59.27	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	58.95	gold quality
hypothalamus	UBERON:0001898	58.90	gold quality
neocortex	UBERON:0001950	58.38	gold quality
frontal cortex	UBERON:0001870	58.29	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.17	gold quality
left adrenal gland cortex	UBERON:0035825	58.11	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	57.43	gold quality
left adrenal gland	UBERON:0001234	57.41	gold quality
adrenal cortex	UBERON:0001235	57.15	gold quality
adult mammalian kidney	UBERON:0000082	56.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.