SUGT1-DT

Summary

SUGT1-DT (SUGT1 divergent transcript, HGNC:54809) is a long non-coding RNA gene on chromosome 13q14.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54809
Approved symbol	SUGT1-DT
Name	SUGT1 divergent transcript
Location	13q14.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273723
Ensembl biotype	lncRNA
Entrez	116435302
RNAcentral	URS00021231EC — lncRNA, 1003 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000620372

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000620372 — 1 exons

Exon	Start	End
ENSE00004172941	52651304	52652395

Expression profiles

Bgee: expression breadth ubiquitous, 177 present calls, max score 88.74.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 1.7991 / max 52.0519, expressed in 994 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137426	1.7991	994

Top tissues by expression

246 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.74	gold quality
endothelial cell	CL:0000115	81.03	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.25	gold quality
mucosa of transverse colon	UBERON:0004991	75.75	gold quality
right uterine tube	UBERON:0001302	75.64	gold quality
right hemisphere of cerebellum	UBERON:0014890	74.58	gold quality
cerebellar hemisphere	UBERON:0002245	74.38	gold quality
cerebellar cortex	UBERON:0002129	74.13	gold quality
ileal mucosa	UBERON:0000331	72.90	gold quality
colonic epithelium	UBERON:0000397	72.83	gold quality
cerebellum	UBERON:0002037	72.83	gold quality
metanephros cortex	UBERON:0010533	71.97	gold quality
epithelial cell of pancreas	CL:0000083	71.77	gold quality
ganglionic eminence	UBERON:0004023	71.73	gold quality
right coronary artery	UBERON:0001625	71.63	gold quality
adenohypophysis	UBERON:0002196	71.39	gold quality
small intestine Peyer’s patch	UBERON:0003454	70.53	gold quality
pituitary gland	UBERON:0000007	70.46	gold quality
spleen	UBERON:0002106	70.46	gold quality
right lobe of thyroid gland	UBERON:0001119	70.26	gold quality
left lobe of thyroid gland	UBERON:0001120	70.23	gold quality
transverse colon	UBERON:0001157	70.10	gold quality
cortical plate	UBERON:0005343	69.86	gold quality
descending thoracic aorta	UBERON:0002345	69.77	gold quality
apex of heart	UBERON:0002098	69.51	gold quality
Brodmann (1909) area 9	UBERON:0013540	69.45	gold quality
small intestine	UBERON:0002108	69.36	gold quality
lower esophagus	UBERON:0013473	69.34	gold quality
lower esophagus muscularis layer	UBERON:0035833	69.33	gold quality
stromal cell of endometrium	CL:0002255	69.15	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.