SV2C-AS1

Summary

SV2C-AS1 (SV2C antisense RNA 1, HGNC:55583) is a long non-coding RNA gene on chromosome 5q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55583
Approved symbol	SV2C-AS1
Name	SV2C antisense RNA 1
Location	5q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248127
Ensembl biotype	lncRNA
Entrez	105379041
RNAcentral	URS00026A1D81 — lncRNA, 1490 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000503652, ENST00000826264, ENST00000826265, ENST00000826266, ENST00000826267, ENST00000826268, ENST00000826269

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503652 — 2 exons

Exon	Start	End
ENSE00004236968	76081414	76082396
ENSE00004236973	76083947	76084186

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 62.80.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	62.80	gold quality
nucleus accumbens	UBERON:0001882	59.01	gold quality
right uterine tube	UBERON:0001302	58.23	gold quality
hypothalamus	UBERON:0001898	56.39	gold quality
duodenum	UBERON:0002114	56.36	gold quality
pancreas	UBERON:0001264	56.18	gold quality
caudate nucleus	UBERON:0001873	54.51	gold quality
monocyte	CL:0000576	54.44	silver quality
substantia nigra	UBERON:0002038	53.79	gold quality
putamen	UBERON:0001874	53.63	gold quality
prefrontal cortex	UBERON:0000451	52.87	gold quality
islet of Langerhans	UBERON:0000006	52.65	gold quality
blood	UBERON:0000178	50.81	silver quality
vermiform appendix	UBERON:0001154	50.24	gold quality
tibial nerve	UBERON:0001323	49.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.48	gold quality
fallopian tube	UBERON:0003889	49.47	gold quality
superior frontal gyrus	UBERON:0002661	48.96	gold quality
body of stomach	UBERON:0001161	48.88	gold quality
stomach	UBERON:0000945	48.80	gold quality
lymph node	UBERON:0000029	48.53	gold quality
left ovary	UBERON:0002119	48.41	gold quality
ovary	UBERON:0000992	48.20	gold quality
multicellular organism	UBERON:0000468	48.15	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	47.96	gold quality
frontal cortex	UBERON:0001870	47.84	gold quality
adrenal gland	UBERON:0002369	47.65	gold quality
adenohypophysis	UBERON:0002196	47.62	gold quality
cerebellar hemisphere	UBERON:0002245	47.55	gold quality
endometrium	UBERON:0001295	47.23	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.