SYK
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Summary
SYK (spleen associated tyrosine kinase, HGNC:11491) is a protein-coding gene on chromosome 9q22.2, encoding Tyrosine-protein kinase SYK (P43405). Non-receptor tyrosine kinase which mediates signal transduction downstream of a variety of transmembrane receptors including classical immunoreceptors like the B-cell receptor (BCR). In precision oncology, SYK OVEREXPRESSION is associated with resistance to Paclitaxel in Ovarian Cancer (CIViC Level D).
This gene encodes a member of the family of non-receptor type Tyr protein kinases. This protein is widely expressed in hematopoietic cells and is involved in coupling activated immunoreceptors to downstream signaling events that mediate diverse cellular responses, including proliferation, differentiation, and phagocytosis. It is thought to be a modulator of epithelial cell growth and a potential tumour suppressor in human breast carcinomas. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 6850 — RefSeq curated summary.
At a glance
- Gene–disease (curated): immunodeficiency 82 with systemic inflammation (Strong, GenCC)
- GWAS associations: 17
- Clinical variants (ClinVar): 115 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 51
- Druggable target: yes — 54 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- MANE Select transcript:
NM_003177
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11491 |
| Approved symbol | SYK |
| Name | spleen associated tyrosine kinase |
| Location | 9q22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000165025 |
| Ensembl biotype | protein_coding |
| OMIM | 600085 |
| Entrez | 6850 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 15 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000375746, ENST00000375747, ENST00000375751, ENST00000375754, ENST00000476708, ENST00000865872, ENST00000865873, ENST00000865874, ENST00000865875, ENST00000865876, ENST00000865877, ENST00000865878, ENST00000865879, ENST00000970482, ENST00000970483, ENST00000970484
RefSeq mRNA: 4 — MANE Select: NM_003177
NM_001135052, NM_001174167, NM_001174168, NM_003177
CCDS: CCDS47992, CCDS6688
Canonical transcript exons
ENST00000375754 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001176425 | 90864589 | 90864667 |
| ENSE00001176435 | 90888515 | 90888627 |
| ENSE00001176447 | 90887749 | 90887889 |
| ENSE00001176458 | 90878764 | 90878953 |
| ENSE00001176467 | 90877571 | 90877780 |
| ENSE00001176477 | 90874672 | 90874849 |
| ENSE00001176486 | 90874204 | 90874291 |
| ENSE00001176494 | 90867131 | 90867199 |
| ENSE00001176505 | 90865048 | 90865097 |
| ENSE00001176518 | 90862206 | 90862344 |
| ENSE00001176524 | 90845434 | 90845594 |
| ENSE00001468273 | 90895528 | 90898549 |
| ENSE00001468302 | 90843858 | 90844315 |
| ENSE00003843040 | 90801819 | 90801893 |
Expression profiles
Bgee: expression breadth ubiquitous, 239 present calls, max score 97.31.
FANTOM5 (CAGE): breadth broad, TPM avg 14.4341 / max 487.2953, expressed in 885 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 97319 | 12.4094 | 860 |
| 97323 | 0.9855 | 130 |
| 97321 | 0.6664 | 248 |
| 97320 | 0.0984 | 42 |
| 97322 | 0.0738 | 31 |
| 97317 | 0.0733 | 30 |
| 97324 | 0.0720 | 38 |
| 97318 | 0.0554 | 23 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 97.31 | gold quality |
| mononuclear cell | CL:0000842 | 96.84 | gold quality |
| leukocyte | CL:0000738 | 96.81 | gold quality |
| granulocyte | CL:0000094 | 95.15 | gold quality |
| blood | UBERON:0000178 | 95.13 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 94.97 | gold quality |
| bone marrow cell | CL:0002092 | 93.04 | gold quality |
| bone marrow | UBERON:0002371 | 92.84 | gold quality |
| vermiform appendix | UBERON:0001154 | 92.68 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 92.46 | gold quality |
| lymph node | UBERON:0000029 | 91.84 | gold quality |
| spleen | UBERON:0002106 | 91.36 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 89.70 | gold quality |
| jejunal mucosa | UBERON:0000399 | 89.23 | gold quality |
| caecum | UBERON:0001153 | 88.70 | gold quality |
| tonsil | UBERON:0002372 | 88.40 | gold quality |
| rectum | UBERON:0001052 | 87.83 | gold quality |
| amniotic fluid | UBERON:0000173 | 87.62 | gold quality |
| duodenum | UBERON:0002114 | 87.12 | gold quality |
| thymus | UBERON:0002370 | 86.91 | gold quality |
| ileal mucosa | UBERON:0000331 | 86.82 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 86.39 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 86.01 | gold quality |
| thyroid gland | UBERON:0002046 | 85.86 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 85.77 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 85.70 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 85.69 | gold quality |
| small intestine | UBERON:0002108 | 85.57 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 85.51 | gold quality |
| endometrium epithelium | UBERON:0004811 | 85.51 | silver quality |
Single-cell (SCXA)
Detected in 8 experiment(s), a significant marker in 7.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-84465 | yes | 37.27 |
| E-HCAD-35 | yes | 34.91 |
| E-CURD-122 | yes | 22.58 |
| E-ANND-3 | yes | 17.41 |
| E-MTAB-9067 | yes | 15.71 |
| E-HCAD-25 | yes | 15.36 |
| E-MTAB-10042 | yes | 4.53 |
| E-MTAB-6386 | no | 686.41 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CREM, ETS2, JUN, NR0B2, POU2F2, PPARG, SPI1, TP53, TXK
miRNA regulators (miRDB)
106 targeting SYK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6798-5P | 100.00 | 65.77 | 699 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-6888-3P | 99.97 | 65.95 | 1170 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-545-3P | 99.95 | 70.74 | 2783 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-6124 | 99.87 | 69.78 | 3551 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4799-5P | 99.82 | 70.60 | 2663 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-4320 | 99.75 | 65.80 | 793 |
| HSA-MIR-4755-5P | 99.71 | 70.34 | 2716 |
| HSA-MIR-5006-3P | 99.71 | 70.26 | 2728 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-4743-3P | 99.62 | 68.12 | 2095 |
| HSA-MIR-6132 | 99.60 | 65.83 | 1554 |
Literature-anchored findings (GeneRIF, showing 40)
- Syk kinase is required for the sequential events of Fc gamma IIa receptor-mediated phagocytosis leading to particle uptake by the receptor-bearing monocyte or neutrophil. (PMID:11441091)
- Primary arrest of circulating platelets on collagen involves phosphorylation of Syk, cortactin and focal adhesion kinase (PMID:11988077)
- Syk/hSlo interaction does not affect the electrical features of BK channels in osteosarcoma cells. (PMID:12009018)
- Proteasome-dependent regulation of Syk tyrosine kinase levels in basophils (PMID:12209081)
- actin-linking proteins moesin and ezrin directly interact with Syk in an ITAM-dependent manner (PMID:12387735)
- mechanism of IL-2-activated SYK regulation of Akt-dependent cell survival in NK cells (PMID:12393431)
- Our data suggest that reduced Syk expression in breast cancers is associated with distant metastasis and poor prognosis. (PMID:12445683)
- This protein suppresses the cell motility and nuclear factor kappa B-mediated secretion of urokinase type plasminogen activator by inhibiting the phosphatidylinositol 3’-kinase activity in breast cancer cells. (PMID:12477728)
- Syk kinase is up-regulated specifically in activated/effector T cells generated by stimulation with anti-CD3 or antigen, and perhaps may serve as both novel indicator for immune activation and target for manipulation of ongoing immune responses. (PMID:12682251)
- H2O2 induces NF-kappaB activation, not through serine phosphorylation or degradation of IkappaBalpha, but through Syk-mediated tyrosine phosphorylation of IkappaBalpha (PMID:12711606)
- Nuclear Syk possesses biological activities associated with tumor suppression in mammary epithelial cells. (PMID:12907655)
- “Syk was first isolated and characterized by Zioncheck et al. and is known to be associated with high affinity IgE receptor…and involved in the signaling pathway after cross-linking of this receptor by antigen in mast cells and basophils.” p. 1685 (PMID:14646171)
- role in lipopolysaccharide-induced c-Jun NH2-terminal kinase activation in human neutrophils (PMID:14699155)
- Hypermethylation leads to lose of the syk gene expression in human breast carcinoma and may be correlated to oncogenesis, metastasis of breast carcinoma. (PMID:15059510)
- The interplay between Syk and ZAP-70 in thymocytes, certain T cells, and B-chronic lymphocytic leukemia cells will modulate the amplitude of antigen-mediated receptor signaling. (PMID:15059847)
- The expression of the Syk gene may play an important role in suppressing growth and metastasis of breast cancer. (PMID:15062056)
- A Syk-dependent signaling cascade controls anti-myeloperoxidase IgM ANCA-dependent neutrophil adhesion and apoptosis. (PMID:15163542)
- data indicate that Syk kinase plays an important role in the translocation of hematopoietic lineage cell-specific protein 1 (HS1) into lipid rafts (PMID:15166239)
- Methylation of Syk promoter is correlated to oncogenesis and metastasis of gastric carcinoma. (PMID:15188513)
- Syk acts a negative control element of EGFR signalling. (PMID:15337524)
- x-ray structure of spleen tyrosine kinase bound to Gleevec (PMID:15507431)
- C-terminal SH2 domain of p85 PI-3 kinase was sufficient for mediating an interaction with tyrosine-phosphorylated Syk (PMID:15536084)
- propose that Syk is involved in signaling pathways induced by integrin engagement in airway epithelial cells; Syk-mediated signaling regulates IL-6 and ICAM-1 expression and may be important in the pathophysiology of lung inflammation (PMID:15557085)
- there is a complex interplay between PKCalpha, Syk, and Src involving physical interaction, phosphorylation, translocation within the cell, and functional activity regulation (PMID:15583006)
- Results demonstrated that the lysosomal change accompanied with the activation of lysosomal enzymes is a primary step in BCR-crosslinking-mediated apoptosis and Syk is responsible for this step through the fusion of BCR-carrying endosomes to lysosomes. (PMID:15670211)
- c-Cbl plays a regulatory role in glycoprotein VI (GPVI)/Fc receptor gamma (FcRgamma)-chain-dependent platelet activation through its interaction with Syk (PMID:15701717)
- These results demonstrate that Syk participates in CXCL12-induced cell polarization, which occurs in concert with cell adhesion mediated by beta1 integrin. (PMID:15707999)
- The SYK is present in the majority of mediastinal B cell lymphomas. (PMID:15744341)
- Novel role for Syk in the maintenance of a bipolar phenotype by regulating lamellipodium formation, which is a critical prerequisite for site-directed migration of leukocytes. (PMID:15754322)
- HS1 Tyr phosphorylation catalyzed by Syk and Lyn plays a crucial role in the translocation of the protein to the membrane and is involved in the cytoskeleton rearrangement triggered by thrombin in human platelets (PMID:15795233)
- Syk-transfected cells formed significantly fewer metastatic tumor lesions than control cells. Syk is novel regulator of metastatic behavior of melanoma cells. (PMID:15955106)
- Dectin-1 activates Syk tyrosine kinase in macrophages for reactive oxygen production (PMID:15956283)
- Data reveal a complex process controlling the association and catalytic activity of protein tyrosine kinases syk and lyn with the human erythrocyte membrane. (PMID:16085052)
- CD21 activation triggered Cbl tyrosine phosphorylation, which interacts with SH2 domains of p85 subunit, SH2 domains of Crk-L and with tyrosine phosphorylated Syk kinase. CD21 activation triggers dissociation of Cbl-Vav complex. (PMID:16289966)
- Shiga toxin (Stx)was found to activate Syk and induce rapid tyrosine phosphorylation of several proteins, one protein being clathrin heavy chain. (PMID:16371508)
- Syk plays an indispensable role in complement-mediated phagocytosis by regulating both actin dynamics and the RhoA activation pathway, and these functions of Syk lead to phagosome formation and pathogen engulfment. (PMID:16449524)
- the cross-talk between Syk and Lck regulates hypoxia/reoxygenation-induced breast cancer progression (PMID:16474166)
- Taken together, these findings indicate that C3bi targets the phagocytic cargo, and engagement or diversion of the Syk route determines the phagocyte response. (PMID:16501050)
- Overview discusses the role of Syk that is essential to complement-mediated phagocytosis. (PMID:16754322)
- identify novel regulatory mechanisms of leukocyte rolling on selectins with a strong dependency on lipid raft integrity and Syk activity (PMID:16849645)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | syk | ENSDARG00000008186 |
| mus_musculus | Syk | ENSMUSG00000021457 |
| rattus_norvegicus | Syk | ENSRNOG00000012160 |
Paralogs (32): FGR (ENSG00000000938), MATK (ENSG00000007264), BTK (ENSG00000010671), FYN (ENSG00000010810), STYK1 (ENSG00000060140), TNK2 (ENSG00000061938), TXK (ENSG00000074966), JAK2 (ENSG00000096968), ABL1 (ENSG00000097007), PTK6 (ENSG00000101213), HCK (ENSG00000101336), BMX (ENSG00000102010), CSK (ENSG00000103653), TYK2 (ENSG00000105397), JAK3 (ENSG00000105639), FRK (ENSG00000111816), ITK (ENSG00000113263), ZAP70 (ENSG00000115085), PTK2B (ENSG00000120899), SRMS (ENSG00000125508), TEC (ENSG00000135605), BLK (ENSG00000136573), ABL2 (ENSG00000143322), FER (ENSG00000151422), JAK1 (ENSG00000162434), PTK2 (ENSG00000169398), TNK1 (ENSG00000174292), YES1 (ENSG00000176105), FES (ENSG00000182511), LCK (ENSG00000182866), SRC (ENSG00000197122), LYN (ENSG00000254087)
Protein
Protein identifiers
Tyrosine-protein kinase SYK — P43405 (reviewed: P43405)
Alternative names: Spleen tyrosine kinase, p72-Syk
All UniProt accessions (1): P43405
UniProt curated annotations — full annotation on UniProt →
Function. Non-receptor tyrosine kinase which mediates signal transduction downstream of a variety of transmembrane receptors including classical immunoreceptors like the B-cell receptor (BCR). Regulates several biological processes including innate and adaptive immunity, cell adhesion, osteoclast maturation, platelet activation and vascular development. Assembles into signaling complexes with activated receptors at the plasma membrane via interaction between its SH2 domains and the receptor tyrosine-phosphorylated ITAM domains. The association with the receptor can also be indirect and mediated by adapter proteins containing ITAM or partial hemITAM domains. The phosphorylation of the ITAM domains is generally mediated by SRC subfamily kinases upon engagement of the receptor. More rarely signal transduction via SYK could be ITAM-independent. Direct downstream effectors phosphorylated by SYK include DEPTOR, VAV1, PLCG1, PI-3-kinase, LCP2 and BLNK. Initially identified as essential in B-cell receptor (BCR) signaling, it is necessary for the maturation of B-cells most probably at the pro-B to pre-B transition. Activated upon BCR engagement, it phosphorylates and activates BLNK an adapter linking the activated BCR to downstream signaling adapters and effectors. It also phosphorylates and activates PLCG1 and the PKC signaling pathway. It also phosphorylates BTK and regulates its activity in B-cell antigen receptor (BCR)-coupled signaling. In addition to its function downstream of BCR also plays a role in T-cell receptor signaling. Also plays a crucial role in the innate immune response to fungal, bacterial and viral pathogens. It is for instance activated by the membrane lectin CLEC7A. Upon stimulation by fungal proteins, CLEC7A together with SYK activates immune cells inducing the production of ROS. Also activates the inflammasome and NF-kappa-B-mediated transcription of chemokines and cytokines in presence of pathogens. Regulates neutrophil degranulation and phagocytosis through activation of the MAPK signaling cascade. Required for the stimulation of neutrophil phagocytosis by IL15. Also mediates the activation of dendritic cells by cell necrosis stimuli. Also involved in mast cells activation. Involved in interleukin-3/IL3-mediated signaling pathway in basophils. Also functions downstream of receptors mediating cell adhesion. Relays for instance, integrin-mediated neutrophils and macrophages activation and P-selectin receptor/SELPG-mediated recruitment of leukocytes to inflammatory loci. Also plays a role in non-immune processes. It is for instance involved in vascular development where it may regulate blood and lymphatic vascular separation. It is also required for osteoclast development and function. Functions in the activation of platelets by collagen, mediating PLCG2 phosphorylation and activation. May be coupled to the collagen receptor by the ITAM domain-containing FCER1G. Also activated by the membrane lectin CLEC1B that is required for activation of platelets by PDPN/podoplanin. Involved in platelet adhesion being activated by ITGB3 engaged by fibrinogen. Together with CEACAM20, enhances production of the cytokine CXCL8/IL-8 via the NFKB pathway and may thus have a role in the intestinal immune response.
Subunit / interactions. Interacts with LYN; phosphorylates SYK. Interacts with RHOH (phosphorylated); regulates mast cells activation. Interacts with NFAM1 (phosphorylated); probably involved in BCR signaling. Interacts with VAV1 (via SH2 domain); phosphorylates VAV1 upon BCR activation. Interacts with GAB2 (phosphorylated); probably involved in IgE Fc receptor signaling. Interacts (via its SH2 domains) with CD79A (via its phosphorylated ITAM domain); the interaction stimulates SYK autophosphorylation and activation. Interacts with FCRL3. Interacts (via SH2 domains) with FCER1G (via ITAM domain); activates SYK and mediates neutrophils and macrophages integrin-mediated activation. Interaction with FCER1G in basophils triggers IL3-induced IL4 production. Interacts with ITGB2 and FGR; involved in ITGB2 downstream signaling. Interacts with ITGB3; upon activation by ITGB3 promotes platelet adhesion. Interacts (via SH2 domains) with TYROBP (via ITAM domain); involved in neutrophils and macrophages integrin-mediated activation. Interacts with MSN and SELPLG; mediates the selectin-dependent activation of SYK by SELPLG. Interacts with BLNK (via SH2 domain). Interacts (via the second SH2 domain) with USP25 (via C-terminus); phosphorylates USP25 and regulates USP25 intracellular levels. Interacts (via SH2 domains) with CLEC1B (dimer). Interacts with CLEC7A; participates in leukocyte activation in presence of fungal pathogens. Interacts (phosphorylated) with SLA; may regulate SYK through CBL recruitment. Interacts with YWHAG; attenuates BCR-induced membrane translocation and activation of SYK. Interacts (via SH2 domains) with GCSAM; the interaction increases after B-cell receptor stimulation, resulting in enhanced SYK autophosphorylation and activity. Interacts with TNS2; leading to the phosphorylation of SYK. Interacts with FLNA (via filamin repeat 5); docks SYK to the plasma membrane. Interacts with CEACAM1; lipopolysaccharide activated neutrophils induce phosphorylation of SYK resulting in the formation of a complex including TLR4 and the phosphorylated form of SYK and CEACAM1, which in turn, recruits PTPN6 that dephosphorylates SYK, reducing the production of reactive oxygen species (ROS) and lysosome disruption, leading to a reduction of the inflammasome activity. Interacts (via SH2 domains) with CEACAM20 (phosphorylated form); the interaction further enhances CEACAM20 phosphorylation. Interacts with IL15RA. Interacts with MPL/TPOR; this interaction negatively regulates THPO-mediated ERK1/2 signaling. (Microbial infection) Interacts with Epstein-Barr virus LMP2A.
Subcellular location. Cell membrane. Cytoplasm. Cytosol.
Tissue specificity. Widely expressed in hematopoietic cells (at protein level). Expressed in neutrophils (at protein level). Within the B-cell compartment, expressed from pro- and pre-B cells to plasma cells.
Post-translational modifications. Ubiquitinated by CBLB after BCR activation; which promotes proteasomal degradation. Autophosphorylated. Phosphorylated on tyrosine residues by LYN following receptors engagement. Phosphorylation on Tyr-323 creates a binding site for CBL, an adapter protein that serves as a negative regulator of BCR-stimulated calcium ion signaling. Phosphorylation at Tyr-348 creates a binding site for VAV1. Phosphorylation on Tyr-348 and Tyr-352 enhances the phosphorylation and activation of phospholipase C-gamma and the early phase of calcium ion mobilization via a phosphoinositide 3-kinase-independent pathway. Phosphorylated on tyrosine residues in response to IL15. Phosphorylation on Ser-297 is very common, it peaks 5 minutes after BCR stimulation, and creates a binding site for YWHAG. Phosphorylation at Tyr-630 creates a binding site for BLNK. Dephosphorylated by PTPN6.
Disease relevance. Immunodeficiency 82 with systemic inflammation (IMD82) [MIM:619381] An autosomal dominant immunologic disorder with onset in early childhood. It is characterized by recurrent infections with various organisms, and multi-organ inflammation that manifests as colitis, hepatitis, arthritis and dermatitis. Patients have a propensity for the development of lymphoma, usually in adulthood. Disease severity is variable. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Autoinhibited. Intramolecular binding of the interdomains A and B (also called linker region) to parts of the catalytic domain keep the catalytic center in an inactive conformation. The phosphorylation of the interdomains or the binding of the SH2 domains with dually phosphorylated ITAM domains on transmembrane proteins disrupt those intramolecular interactions allowing the kinase domain to adopt an active conformation. The phosphorylation of SYK and of the ITAM domains which is responsible for SYK activation is essentially mediated by SRC subfamily kinases, like LYN, upon transmembrane receptors engagement. May also be negatively regulated by PTPN6 through dephosphorylation. Downstream signaling adapters and intermediates like BLNK or RHOH may mediate positive and/or negative feedback regulation. Negatively regulated by CBL and CBLB through ubiquitination and probable degradation. Phosphorylates SH3BP2 which in turn may regulate SYK through LYN.
Domain organisation. The SH2 domains mediate the interaction of SYK with the phosphorylated ITAM domains of transmembrane proteins. Some proteins like CLEC1B have a partial ITAM domain (also called hemITAM) containing a single YxxL motif. The interaction with SYK requires CLEC1B homodimerization.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family. SYK/ZAP-70 subfamily.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P43405-1 | Long | yes |
| P43405-2 | Short |
RefSeq proteins (4): NP_001128524, NP_001167638, NP_001167639, NP_003168* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR000980 | SH2 | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR012234 | Tyr_kinase_non-rcpt_SYK/ZAP70 | Family |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR020635 | Tyr_kinase_cat_dom | Domain |
| IPR023420 | Kinase_SYK/ZAP-70_inter-SH2_sf | Homologous_superfamily |
| IPR035838 | SYK/ZAP-70_N_SH2 | Domain |
| IPR036860 | SH2_dom_sf | Homologous_superfamily |
| IPR050198 | Non-receptor_tyrosine_kinases | Family |
Pfam: PF00017, PF07714
Enzyme classification (BRENDA):
- EC 2.7.10.2 — non-specific protein-tyrosine kinase (BRENDA: 41 organisms, 396 substrates, 479 inhibitors, 43 Km, 32 kcat entries)
- EC 2.7.12.1 — dual-specificity kinase (BRENDA: 51 organisms, 125 substrates, 188 inhibitors, 14 Km, 10 kcat entries)
Substrate kinetics (BRENDA)
8 substrates with measured Km, best-characterized 8. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.014–17.64 | 12 |
| [KDSRC KINASE]-L-TYROSINE | 0.0057–0.24 | 12 |
| POLY(GLU4-TYR) | 0.018–0.659 | 10 |
| ATP | 0.019–0.1185 | 7 |
| HISTONE H1 | 0.006–0.012 | 5 |
| EEEEYIQ[DP]-8-HYDROXY-5-(N,N-DIMETHYLSULFONAMIDO | 0.057 | 1 |
| S1 PEPTIDE | 0.037 | 1 |
| EEEEY | — | 0 |
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (106 total): modified residue 31, strand 28, helix 25, sequence variant 6, domain 3, turn 2, region of interest 2, mutagenesis site 2, sequence conflict 2, binding site 2, chain 1, splice variant 1, active site 1
Structure
Experimental structures (PDB)
93 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4YJR | X-RAY DIFFRACTION | 1.32 |
| 4YJQ | X-RAY DIFFRACTION | 1.34 |
| 4FYO | X-RAY DIFFRACTION | 1.4 |
| 5LMA | X-RAY DIFFRACTION | 1.43 |
| 3BUW | X-RAY DIFFRACTION | 1.45 |
| 6ZCS | X-RAY DIFFRACTION | 1.47 |
| 5TIU | X-RAY DIFFRACTION | 1.49 |
| 8XQ1 | X-RAY DIFFRACTION | 1.5 |
| 8BI2 | X-RAY DIFFRACTION | 1.51 |
| 4YJT | X-RAY DIFFRACTION | 1.52 |
| 1XBB | X-RAY DIFFRACTION | 1.57 |
| 4RX8 | X-RAY DIFFRACTION | 1.59 |
| 4PX6 | X-RAY DIFFRACTION | 1.6 |
| 4YJO | X-RAY DIFFRACTION | 1.6 |
| 8RRQ | X-RAY DIFFRACTION | 1.6 |
| 6HM7 | X-RAY DIFFRACTION | 1.64 |
| 4YJV | X-RAY DIFFRACTION | 1.65 |
| 6ZCX | X-RAY DIFFRACTION | 1.66 |
| 4YJU | X-RAY DIFFRACTION | 1.67 |
| 4I0T | X-RAY DIFFRACTION | 1.7 |
| 5CXZ | X-RAY DIFFRACTION | 1.7 |
| 6ZCR | X-RAY DIFFRACTION | 1.73 |
| 6ZCU | X-RAY DIFFRACTION | 1.73 |
| 4FZ7 | X-RAY DIFFRACTION | 1.75 |
| 4RX9 | X-RAY DIFFRACTION | 1.75 |
| 8RRZ | X-RAY DIFFRACTION | 1.75 |
| 4XG7 | X-RAY DIFFRACTION | 1.76 |
| 5CY3 | X-RAY DIFFRACTION | 1.76 |
| 5TT7 | X-RAY DIFFRACTION | 1.77 |
| 4FL1 | X-RAY DIFFRACTION | 1.79 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P43405-F1 | 84.52 | 0.64 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 494 (proton acceptor)
Ligand- & substrate-binding residues (2): 377–385; 402
Post-translational modifications (31): 44, 47, 131, 202, 256, 295, 296, 297, 316, 317, 319, 323, 345, 348, 350, 352, 364, 379, 384, 484 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 297 | abolishes ywhag binding. |
| 630 | loss of interaction with blnk. |
Function
Pathways and Gene Ontology
Reactome pathways
47 pathways
| ID | Pathway |
|---|---|
| R-HSA-114604 | GPVI-mediated activation cascade |
| R-HSA-2029481 | FCGR activation |
| R-HSA-2029482 | Regulation of actin dynamics for phagocytic cup formation |
| R-HSA-2029485 | Role of phospholipids in phagocytosis |
| R-HSA-2424491 | DAP12 signaling |
| R-HSA-2454202 | Fc epsilon receptor (FCERI) signaling |
| R-HSA-2730905 | Role of LAT2/NTAL/LAB on calcium mobilization |
| R-HSA-2871796 | FCERI mediated MAPK activation |
| R-HSA-2871809 | FCERI mediated Ca+2 mobilization |
| R-HSA-354192 | Integrin signaling |
| R-HSA-5607764 | CLEC7A (Dectin-1) signaling |
| R-HSA-5621480 | Dectin-2 family |
| R-HSA-9020558 | Interleukin-2 signaling |
| R-HSA-912631 | Regulation of signaling by CBL |
| R-HSA-9664323 | FCGR3A-mediated IL10 synthesis |
| R-HSA-9664422 | FCGR3A-mediated phagocytosis |
| R-HSA-9674555 | Signaling by CSF3 (G-CSF) |
| R-HSA-9679191 | Potential therapeutics for SARS |
| R-HSA-9705462 | Inactivation of CSF3 (G-CSF) signaling |
| R-HSA-9706374 | FLT3 signaling through SRC family kinases |
| R-HSA-983695 | Antigen activates B Cell Receptor (BCR) leading to generation of second messengers |
| R-HSA-109582 | Hemostasis |
| R-HSA-1280215 | Cytokine Signaling in Immune system |
| R-HSA-1280218 | Adaptive Immune System |
| R-HSA-162582 | Signal Transduction |
| R-HSA-1643685 | Disease |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-2029480 | Fcgamma receptor (FCGR) dependent phagocytosis |
| R-HSA-2172127 | DAP12 interactions |
MSigDB gene sets: 0 (showing top):
GO Biological Process (91): angiogenesis (GO:0001525), cell activation (GO:0001775), lymph vessel development (GO:0001945), positive regulation of receptor internalization (GO:0002092), stimulatory C-type lectin receptor signaling pathway (GO:0002223), adaptive immune response (GO:0002250), macrophage activation involved in immune response (GO:0002281), neutrophil activation involved in immune response (GO:0002283), leukocyte activation involved in immune response (GO:0002366), serotonin secretion by platelet (GO:0002554), cell surface pattern recognition receptor signaling pathway (GO:0002752), negative regulation of inflammatory response to antigenic stimulus (GO:0002862), protein phosphorylation (GO:0006468), protein import into nucleus (GO:0006606), leukocyte cell-cell adhesion (GO:0007159), integrin-mediated signaling pathway (GO:0007229), animal organ morphogenesis (GO:0009887), regulation of platelet activation (GO:0010543), regulation of tumor necrosis factor-mediated signaling pathway (GO:0010803), peptidyl-tyrosine phosphorylation (GO:0018108), leukotriene biosynthetic process (GO:0019370), calcium-mediated signaling (GO:0019722), platelet activation (GO:0030168), B cell differentiation (GO:0030183), neutrophil chemotaxis (GO:0030593), positive regulation of protein-containing complex assembly (GO:0031334), receptor internalization (GO:0031623), positive regulation of type I interferon production (GO:0032481), positive regulation of granulocyte macrophage colony-stimulating factor production (GO:0032725), positive regulation of interleukin-10 production (GO:0032733), positive regulation of interleukin-12 production (GO:0032735), positive regulation of interleukin-3 production (GO:0032752), positive regulation of interleukin-4 production (GO:0032753), positive regulation of interleukin-6 production (GO:0032755), positive regulation of interleukin-8 production (GO:0032757), positive regulation of tumor necrosis factor production (GO:0032760), positive regulation of mast cell cytokine production (GO:0032765), regulation of superoxide anion generation (GO:0032928), positive regulation of superoxide anion generation (GO:0032930), positive regulation of cell adhesion mediated by integrin (GO:0033630)
GO Molecular Function (19): phosphotyrosine residue binding (GO:0001784), protein kinase activity (GO:0004672), protein serine/threonine kinase activity (GO:0004674), protein tyrosine kinase activity (GO:0004713), non-membrane spanning protein tyrosine kinase activity (GO:0004715), signaling receptor binding (GO:0005102), integrin binding (GO:0005178), ATP binding (GO:0005524), interleukin-15 receptor binding (GO:0016170), kinase activity (GO:0016301), protein kinase binding (GO:0019901), phosphatase binding (GO:0019902), Toll-like receptor binding (GO:0035325), SH2 domain binding (GO:0042169), phospholipase binding (GO:0043274), scaffold protein binding (GO:0097110), nucleotide binding (GO:0000166), protein binding (GO:0005515), transferase activity (GO:0016740)
GO Cellular Component (9): nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829), plasma membrane (GO:0005886), B cell receptor complex (GO:0019815), early phagosome (GO:0032009), protein-containing complex (GO:0032991), T cell receptor complex (GO:0042101), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-16 pathways:
| Category | Pathways |
|---|---|
| Fcgamma receptor (FCGR) dependent phagocytosis | 3 |
| Fc epsilon receptor (FCERI) signaling | 3 |
| C-type lectin receptors (CLRs) | 2 |
| Platelet activation, signaling and aggregation | 1 |
| DAP12 interactions | 1 |
| Innate Immune System | 1 |
| Signal Transduction | 1 |
| Platelet Aggregation (Plug Formation) | 1 |
| Interleukin-2 family signaling | 1 |
| Interleukin-3, Interleukin-5 and GM-CSF signaling | 1 |
| Anti-inflammatory response favouring Leishmania parasite infection | 1 |
| Leishmania phagocytosis | 1 |
| Cytokine Signaling in Immune system | 1 |
| SARS-CoV Infections | 1 |
| Signaling by CSF3 (G-CSF) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| immune response | 4 |
| cellular anatomical structure | 3 |
| innate immune response activating cell surface receptor signaling pathway | 2 |
| myeloid cell activation involved in immune response | 2 |
| protein kinase activity | 2 |
| protein binding | 2 |
| signaling receptor binding | 2 |
| enzyme binding | 2 |
| plasma membrane signaling receptor complex | 2 |
| blood vessel morphogenesis | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| cellular process | 1 |
| multicellular organismal process | 1 |
| vasculature development | 1 |
| anatomical structure development | 1 |
| regulation of receptor internalization | 1 |
| receptor internalization | 1 |
| positive regulation of receptor-mediated endocytosis | 1 |
| cellular response to lectin | 1 |
| leukocyte activation involved in immune response | 1 |
| macrophage activation | 1 |
| neutrophil activation | 1 |
| cell activation involved in immune response | 1 |
| leukocyte activation | 1 |
| serotonin secretion involved in inflammatory response | 1 |
| platelet degranulation | 1 |
| establishment of localization in cell | 1 |
| exocytic process | 1 |
| pattern recognition receptor signaling pathway | 1 |
| inflammatory response to antigenic stimulus | 1 |
| regulation of inflammatory response to antigenic stimulus | 1 |
| negative regulation of inflammatory response | 1 |
| negative regulation of immune response | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| intracellular protein transport | 1 |
| protein localization to nucleus | 1 |
| import into nucleus | 1 |
| establishment of protein localization to organelle | 1 |
| cell-cell adhesion | 1 |
Protein interactions and networks
STRING
4648 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SYK | LCP2 | Q13094 | 998 |
| SYK | BLNK | Q8WV28 | 998 |
| SYK | FCER1G | P30273 | 998 |
| SYK | VAV1 | P15498 | 998 |
| SYK | TYROBP | O43914 | 997 |
| SYK | CARD9 | Q9H257 | 997 |
| SYK | CLEC7A | Q9BXN2 | 995 |
| SYK | CD79B | P40259 | 993 |
| SYK | CD79A | P11912 | 992 |
| SYK | PLCG2 | P16885 | 987 |
| SYK | BTK | Q06187 | 987 |
| SYK | LYN | P07948 | 986 |
| SYK | SRC | P12931 | 976 |
| SYK | VAV3 | Q9UKW4 | 969 |
| SYK | CD247 | P20963 | 967 |
IntAct
182 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SYK | STAT3 | psi-mi:“MI:0915”(physical association) | 0.870 |
| STAT3 | SYK | psi-mi:“MI:0915”(physical association) | 0.870 |
| PYCARD | CASP1 | psi-mi:“MI:0914”(association) | 0.860 |
| SYK | USP25 | psi-mi:“MI:0915”(physical association) | 0.830 |
| USP25 | SYK | psi-mi:“MI:0915”(physical association) | 0.830 |
| SH3BP2 | VAV1 | psi-mi:“MI:0914”(association) | 0.790 |
| LCK | SYK | psi-mi:“MI:0915”(physical association) | 0.750 |
| LCK | SYK | psi-mi:“MI:0914”(association) | 0.750 |
| SYK | FLT3 | psi-mi:“MI:0407”(direct interaction) | 0.740 |
| SYK | CBL | psi-mi:“MI:0217”(phosphorylation reaction) | 0.740 |
| CBL | SYK | psi-mi:“MI:0217”(phosphorylation reaction) | 0.740 |
| CBL | SYK | psi-mi:“MI:0407”(direct interaction) | 0.740 |
BioGRID (342): IL17RA (Affinity Capture-Western), TRAF6 (Affinity Capture-Western), TRAF3IP2 (Affinity Capture-Western), SYK (Affinity Capture-Western), SYK (Two-hybrid), SH2D2A (Two-hybrid), USP25 (Two-hybrid), SYK (Affinity Capture-Western), SYK (Affinity Capture-Western), FAM46A (Two-hybrid), SYK (Affinity Capture-Luminescence), SYK (Two-hybrid), SYK (Two-hybrid), HCLS1 (Co-localization), CTTN (Co-localization)
ESM2 similar proteins: A7A1P0, A8WZ92, B4IT27, B5VNQ3, B6A7Q3, C0RW22, F1N9Y5, G5EC24, H2KZW3, O01798, O12990, O19064, O35495, O60674, O94921, P08458, P22517, P23458, P23561, P26818, P27466, P32865, P34635, P34892, P35626, P42159, P42687, P43405, P48025, P51813, P52332, P53356, P83104, Q00537, Q00655, Q09639, Q10056, Q12469, Q17833, Q24145
Diamond homologs: A0JNB0, A1Y2K1, F1N9Y5, G5EBZ8, G5ECJ6, O35346, O45539, O54967, P00519, P00520, P00521, P00522, P00523, P00524, P00525, P00530, P00533, P00534, P00535, P00541, P00542, P03949, P05480, P06239, P06240, P06241, P08103, P08630, P08631, P09760, P09769, P10447, P11273, P12931, P13115, P13116, P13388, P14084, P14085, P14234
SIGNOR signaling
91 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| SYK | up-regulates | VAV1 | phosphorylation |
| VAV1 | up-regulates | SYK | binding |
| SYK | down-regulates | SNCA | phosphorylation |
| SYK | down-regulates | MAPT | phosphorylation |
| CHEK1 | down-regulates | SYK | phosphorylation |
| SYK | up-regulates | IKZF1 | phosphorylation |
| R406 | down-regulates | SYK | “chemical inhibition” |
| “Fostamatinib disodium” | down-regulates | SYK | “chemical inhibition” |
| SYK | “up-regulates activity” | IL15RA | phosphorylation |
| SYK | “down-regulates activity” | LCK | phosphorylation |
| SYK | “up-regulates activity” | MAP4K1 | phosphorylation |
| SYK | “up-regulates activity” | PLCG1 | phosphorylation |
| SYK | “up-regulates activity” | PRKCA | phosphorylation |
| SYK | “up-regulates activity” | SYK | phosphorylation |
| SYK | “up-regulates activity” | TUBA4A | phosphorylation |
| SYK | “up-regulates activity” | BTK | phosphorylation |
| 2-[[7-(3,4-dimethoxyphenyl)-5-imidazo[1,2-c]pyrimidinyl]amino]-3-pyridinecarboxamide | “down-regulates activity” | SYK | “chemical inhibition” |
| BCR-Mk | “up-regulates activity” | SYK | binding |
| BCR-Ml | “up-regulates activity” | SYK | binding |
| BCR-Dk | “up-regulates activity” | SYK | binding |
| BCR-Dl | “up-regulates activity” | SYK | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 65 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of KIT signaling | 7 | 77.9× | 2e-10 |
| Signaling by phosphorylated juxtamembrane, extracellular and kinase domain KIT mutants | 8 | 76.9× | 5e-12 |
| PI3K events in ERBB2 signaling | 6 | 74.6× | 5e-09 |
| GAB1 signalosome | 6 | 70.5× | 6e-09 |
| Constitutive Signaling by EGFRvIII | 5 | 66.1× | 2e-07 |
| Regulation of signaling by CBL | 7 | 64.4× | 6e-10 |
| Signaling by ALK | 6 | 63.4× | 1e-08 |
| Signal regulatory protein family interactions | 5 | 62.2× | 3e-07 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| Fc-gamma receptor signaling pathway involved in phagocytosis | 6 | 68.0× | 4e-08 |
| stimulatory C-type lectin receptor signaling pathway | 5 | 59.1× | 1e-06 |
| Fc-epsilon receptor signaling pathway | 5 | 59.1× | 1e-06 |
| T cell costimulation | 9 | 54.4× | 1e-11 |
| peptidyl-tyrosine phosphorylation | 8 | 54.4× | 2e-10 |
| leukocyte migration | 5 | 50.3× | 3e-06 |
| negative regulation of inflammatory response to antigenic stimulus | 5 | 48.5× | 3e-06 |
| epidermal growth factor receptor signaling pathway | 11 | 44.0× | 8e-13 |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
115 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 47 |
| Likely benign | 11 |
| Benign | 28 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 989389 | NM_003177.7(SYK):c.1649C>A (p.Ser550Tyr) | Pathogenic |
| 989237 | NM_003177.7(SYK):c.1350G>A (p.Met450Ile) | Likely pathogenic |
| 989387 | NM_003177.7(SYK):c.1024C>A (p.Pro342Thr) | Likely pathogenic |
SpliceAI
2348 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:90801891:CAGGT:C | donor_loss | 1.0000 |
| 9:90801892:AG:A | donor_loss | 1.0000 |
| 9:90801893:GG:G | donor_loss | 1.0000 |
| 9:90844271:G:GT | donor_gain | 1.0000 |
| 9:90844272:A:T | donor_gain | 1.0000 |
| 9:90844285:GGAA:G | donor_gain | 1.0000 |
| 9:90844286:G:T | donor_gain | 1.0000 |
| 9:90844286:GAA:G | donor_gain | 1.0000 |
| 9:90845586:A:T | donor_gain | 1.0000 |
| 9:90845590:TTCCT:T | donor_gain | 1.0000 |
| 9:90845591:TCCT:T | donor_gain | 1.0000 |
| 9:90845593:CT:C | donor_gain | 1.0000 |
| 9:90845593:CTG:C | donor_loss | 1.0000 |
| 9:90845594:TG:T | donor_loss | 1.0000 |
| 9:90845595:G:GG | donor_gain | 1.0000 |
| 9:90845596:T:G | donor_loss | 1.0000 |
| 9:90845597:GAGT:G | donor_loss | 1.0000 |
| 9:90845598:AGTA:A | donor_loss | 1.0000 |
| 9:90862200:TTCTA:T | acceptor_loss | 1.0000 |
| 9:90862201:TCTA:T | acceptor_loss | 1.0000 |
| 9:90862202:CTA:C | acceptor_loss | 1.0000 |
| 9:90862203:TA:T | acceptor_loss | 1.0000 |
| 9:90862204:A:AG | acceptor_gain | 1.0000 |
| 9:90862204:AG:A | acceptor_gain | 1.0000 |
| 9:90862205:G:GA | acceptor_gain | 1.0000 |
| 9:90862205:GG:G | acceptor_gain | 1.0000 |
| 9:90862299:G:GT | donor_gain | 1.0000 |
| 9:90862299:G:T | donor_gain | 1.0000 |
| 9:90862343:AGG:A | donor_loss | 1.0000 |
| 9:90862344:GGTAC:G | donor_loss | 1.0000 |
AlphaMissense
4178 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:90843951:G:T | G18V | 1.000 |
| 9:90843971:G:C | A25P | 1.000 |
| 9:90844304:T:A | W136R | 1.000 |
| 9:90844304:T:C | W136R | 1.000 |
| 9:90845452:G:C | A146P | 1.000 |
| 9:90845477:T:C | L154P | 1.000 |
| 9:90845486:T:C | L157P | 1.000 |
| 9:90845518:T:A | W168R | 1.000 |
| 9:90845518:T:C | W168R | 1.000 |
| 9:90845585:G:T | G190V | 1.000 |
| 9:90845590:T:C | F192L | 1.000 |
| 9:90845592:C:A | F192L | 1.000 |
| 9:90845592:C:G | F192L | 1.000 |
| 9:90845594:T:C | L193P | 1.000 |
| 9:90862241:T:C | L205P | 1.000 |
| 9:90862327:T:C | F234L | 1.000 |
| 9:90862329:C:A | F234L | 1.000 |
| 9:90862329:C:G | F234L | 1.000 |
| 9:90864590:T:C | L240P | 1.000 |
| 9:90864623:T:C | L251S | 1.000 |
| 9:90874777:T:C | L370P | 1.000 |
| 9:90874800:G:C | G378R | 1.000 |
| 9:90874801:G:A | G378D | 1.000 |
| 9:90874806:G:C | G380R | 1.000 |
| 9:90874806:G:T | G380C | 1.000 |
| 9:90874807:G:A | G380D | 1.000 |
| 9:90874807:G:T | G380V | 1.000 |
| 9:90874812:T:A | F382I | 1.000 |
| 9:90874812:T:C | F382L | 1.000 |
| 9:90874812:T:G | F382V | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000004238 (9:90810003 G>A), RS1000020787 (9:90869701 C>G), RS1000027779 (9:90851192 A>G,T), RS1000072503 (9:90845619 C>T), RS1000074552 (9:90870091 ACT>A), RS1000092663 (9:90830928 C>T), RS1000112503 (9:90810988 T>C), RS1000183112 (9:90842460 CAT>C), RS1000194712 (9:90824831 C>G), RS1000236176 (9:90867349 G>A), RS1000256617 (9:90816430 C>T), RS1000267256 (9:90867611 A>G), RS1000286773 (9:90858150 G>A), RS1000314178 (9:90822772 G>A,T), RS1000315248 (9:90864121 C>T)
Disease associations
OMIM: gene MIM:600085 | disease phenotypes: MIM:619381, MIM:300755
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| immunodeficiency 82 with systemic inflammation | Strong | Autosomal dominant |
Mondo (5): immunodeficiency 82 with systemic inflammation (MONDO:0030308), long QT syndrome (MONDO:0002442), colitis (MONDO:0005292), arthritic joint disease (MONDO:0005578), immunodeficiency disease (MONDO:0021094)
Orphanet (1): Immunodeficiency-systemic inflammation-lymphoma predisposition syndrome (Orphanet:695807)
HPO phenotypes
51 total (30 of 51 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000155 | Oral ulcer |
| HP:0000403 | Recurrent otitis media |
| HP:0000988 | Skin rash |
| HP:0001369 | Arthritis |
| HP:0001386 | Joint swelling |
| HP:0001581 | Recurrent skin infections |
| HP:0001744 | Splenomegaly |
| HP:0001824 | Weight loss |
| HP:0001903 | Anemia |
| HP:0001954 | Recurrent fever |
| HP:0002013 | Vomiting |
| HP:0002014 | Diarrhea |
| HP:0002027 | Abdominal pain |
| HP:0002039 | Anorexia |
| HP:0002041 | Intractable diarrhea |
| HP:0002090 | Pneumonia |
| HP:0002110 | Bronchiectasis |
| HP:0002583 | Colitis |
| HP:0002588 | Duodenal ulcer |
| HP:0002716 | Lymphadenopathy |
| HP:0002719 | Recurrent infections |
| HP:0002722 | Recurrent abscess formation |
| HP:0002729 | Follicular hyperplasia |
| HP:0002749 | Osteomalacia |
| HP:0002754 | Osteomyelitis |
| HP:0002850 | Decreased circulating total IgM |
| HP:0003073 | Hypoalbuminemia |
| HP:0003228 | Hypernatremia |
| HP:0003460 | Decreased circulating total IgA |
GWAS associations
17 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000993_1 | Vascular dementia | 7.000000e-11 |
| GCST001198_36 | Multiple sclerosis | 9.000000e-07 |
| GCST001461_4 | Type 2 diabetes | 5.000000e-06 |
| GCST004373_11 | Atrial fibrillation | 6.000000e-06 |
| GCST004616_201 | Platelet distribution width | 2.000000e-11 |
| GCST005025_19 | Anti-saccade response | 9.000000e-06 |
| GCST007124_5 | Multiple sclerosis and HDL levels (pleiotropy) | 1.000000e-06 |
| GCST007600_13 | Alzheimer’s disease | 5.000000e-06 |
| GCST008951_2 | Chromosomal aberration frequency (total) | 2.000000e-07 |
| GCST009209_8 | Frontal pole volume | 6.000000e-07 |
| GCST009391_1419 | Metabolite levels | 1.000000e-06 |
| GCST90002393_307 | Monocyte count | 2.000000e-11 |
| GCST90002395_54 | Mean platelet volume | 6.000000e-09 |
| GCST90002397_686 | Mean spheric corpuscular volume | 1.000000e-12 |
| GCST90002400_379 | Plateletcrit | 9.000000e-11 |
| GCST90002401_485 | Platelet distribution width | 2.000000e-25 |
| GCST90002402_64 | Platelet count | 9.000000e-18 |
EFO canonical traits (8, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007984 | platelet component distribution width |
| EFO:0006874 | antisaccade response measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0009860 | chromosomal aberration frequency |
| EFO:0010452 | adenosine diphosphate measurement |
| EFO:0005091 | monocyte count |
| EFO:0007985 | platelet crit |
| EFO:0004309 | platelet count |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001168 | Arthritis | C05.550.114 |
| D003092 | Colitis | C06.405.205.265; C06.405.469.158.188 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2599 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
54 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 389,119 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL180022 | NERATINIB | 4 | 9,404 |
| CHEMBL1834657 | INFIGRATINIB PHOSPHATE | 4 | 285 |
| CHEMBL1852688 | INFIGRATINIB | 4 | 2,209 |
| CHEMBL1983268 | ENTRECTINIB | 4 | 3,510 |
| CHEMBL2103830 | FOSTAMATINIB | 4 | 3,841 |
| CHEMBL2403108 | CERITINIB | 4 | 8,551 |
| CHEMBL288441 | BOSUTINIB | 4 | 12,255 |
| CHEMBL3301622 | GILTERITINIB | 4 | 2,395 |
| CHEMBL3989516 | FOSTAMATINIB DISODIUM | 4 | 62 |
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL5416410 | DASATINIB | 4 | 655 |
| CHEMBL553 | ERLOTINIB | 4 | 108,300 |
| CHEMBL601719 | CRIZOTINIB | 4 | 14,403 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL941 | IMATINIB | 4 | 111,611 |
| CHEMBL3265032 | ENTOSPLETINIB | 3 | 1,628 |
| CHEMBL491473 | CEDIRANIB | 3 | 9,098 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL1230609 | FORETINIB | 2 | |
| CHEMBL151 | LUTEOLIN | 2 | |
| CHEMBL1738757 | REBASTINIB | 2 | |
| CHEMBL1922094 | APITOLISIB | 2 | |
| CHEMBL1967878 | CENISERTIB | 2 | |
| CHEMBL1976040 | ADAVOSERTIB | 2 | |
| CHEMBL1980297 | ILORASERTIB | 2 | |
| CHEMBL2170582 | R-343 | 2 | |
| CHEMBL31574 | FISETIN | 2 | |
| CHEMBL3681949 | TOP-1288 | 2 |
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| SYK OVEREXPRESSION | Paclitaxel | Ovarian Cancer | Resistance | CIViC D | EID752 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Syk family
Most potent curated ligand interactions (20 total), top 20:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| TAS05567 | Inhibition | 9.43 | pIC50 |
| sovleplenib | Inhibition | 9.0 | pIC50 |
| P505-15 | Inhibition | 9.0 | pIC50 |
| compound 23 [PMID: 17600705] | Inhibition | 8.4 | pIC50 |
| GSK143 | Inhibition | 8.12 | pIC50 |
| entospletinib | Inhibition | 8.11 | pIC50 |
| mivavotinib | Inhibition | 8.01 | pEC50 |
| gusacitinib | Inhibition | 8.0 | pIC50 |
| lanraplenib | Inhibition | 7.87 | pIC50 |
| Syk inhibitor | Inhibition | 7.85 | pIC50 |
| tamatinib | Inhibition | 7.72 | pKd |
| BAY 61-3606 | Inhibition | 7.59 | pIC50 |
| cerdulatinib | Inhibition | 7.49 | pIC50 |
| Syk inhibitor II | Inhibition | 7.39 | pIC50 |
| GSK2646264 | Inhibition | 7.1 | pIC50 |
| apitolisib | Inhibition | 6.87 | pIC50 |
| lazertinib | Inhibition | 6.7 | pIC50 |
| compound 7 [PMID: 22464456] | Inhibition | 6.45 | pIC50 |
| Syk inhibitor III | Inhibition | 5.55 | pIC50 |
| ER-27319 | Inhibition | 5.0 | pIC50 |
Binding affinities (BindingDB)
4194 measured of 4778 human assays (4778 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| cis-(1S,4R)-4-[5-[4-amino-6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.071 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| 4-hydroxy-4-[5-[4-methyl-6-[[4-(triazolidin-4-yl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.072 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1R,4S)-4-hydroxy-2,2-dimethyl-4-[5-[4-methyl-6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.073 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| BDBM302035 | IC50 | 0.086 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-hydroxy-2,2-dimethyl-4-[5-[6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.092 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-[5-[6-[(5-chloro-4-methyl-2-pyridinyl)amino]-4-methyl-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.097 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cyclopropyl-[5-[[4-[4-[[(3R)-3-hydroxypyrrolidin-1-yl]methyl]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-1-methylindol-3-yl]methanone | IC50 | 0.1 nM | US-8871778: Substituted pyrimidine compounds and their use as SYK inhibitors |
| 2,2,2-trifluoro-1-[5-[[6-[4-[[(3R)-3-hydroxypyrrolidin-1-yl]methyl]-3-methylpyrazol-1-yl]-2-pyridinyl]amino]-1-methylindol-3-yl]ethanone | IC50 | 0.1 nM | US-8871778: Substituted pyrimidine compounds and their use as SYK inhibitors |
| (4R)-4-[(1R)-1-[7-(6-morpholin-4-yl-3-pyridinyl)quinolin-5-yl]oxyethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8912173: Substituted quinolines and their use as medicaments |
| 6-[5-[(1R)-1-[(3R)-5-oxopyrrolidin-3-yl]ethoxy]quinolin-7-yl]-1,4-dihydro-3,1-benzoxazin-2-one | IC50 | 0.1 nM | US-8912173: Substituted quinolines and their use as medicaments |
| (4R)-4-[(1R)-1-[7-[1-(2-hydroxyethyl)pyrazol-4-yl]quinolin-5-yl]oxyethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8912173: Substituted quinolines and their use as medicaments |
| 2-[4-[5-[(1R)-1-[(3R)-5-oxopyrrolidin-3-yl]ethoxy]quinolin-7-yl]pyrazol-1-yl]ethyl acetate | IC50 | 0.1 nM | US-8912173: Substituted quinolines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(6-morpholin-4-yl-3-pyridinyl)-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-[3-methoxy-4-(oxan-4-yloxy)phenyl]-1,6-naphthyridin-5-yl]oxy]propyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[1-[[7-(3,4-dimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]-2,2,2-trifluoroethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3,4-dimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3,4-dimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]propyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3,4-dimethoxy-5-methylphenyl)-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3-methoxy-4-propan-2-yloxyphenyl)-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3-methoxy-4-propan-2-yloxyphenyl)-1,6-naphthyridin-5-yl]oxy]propyl]pyrrolidin-2-one | IC50 | 0.1 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| 4-[1-[5-[6-[(5-fluoro-4-methyl-2-pyridinyl)amino]-4-methyl-2-pyridinyl]-1,3-thiazol-2-yl]-1-hydroxyethyl]cyclohexane-1-carboxylic acid | IC50 | 0.1 nM | US-9120785: Pyridyl aminopyridines as Syk inhibitors |
| BDBM301994 | IC50 | 0.103 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-hydroxy-4-[5-[6-[(4-methoxy-2-pyridinyl)amino]-4-methyl-2-pyridinyl]-1,3-thiazol-2-yl]-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.104 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-hydroxy-2,2-dimethyl-4-[5-[4-methyl-6-[(4-methyl-2-pyridinyl)amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.113 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| 4-[5-[4-amino-6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.119 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-[5-[6-[(5-fluoro-4-methyl-2-pyridinyl)amino]-4-methyl-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.127 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| (5R)-5-hydroxy-5-[5-[3-methyl-5-([1,2,4]triazolo[1,5-a]pyridin-2-ylamino)phenyl]-1,3-thiazol-2-yl]-7,8-dihydro-6H-naphthalene-2-carboxylic acid | IC50 | 0.129 nM | US-9670196: Thiazole-substituted aminoheteroaryls as Spleen Tyrosine Kinase inhibitors |
| 4-hydroxy-4-[5-[4-methyl-6-[(4-piperidin-4-yloxy-2-pyridinyl)amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.152 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-[5-[6-[(4-tert-butyl-2-pyridinyl)amino]-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.158 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-hydroxy-2,2-dimethyl-4-[5-[4-methyl-6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.16 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| (1S,2R,4R)-4-[5-[6-[(5-fluoro-4-methyl-2-pyridinyl)amino]-4-methyl-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2-methylcyclohexane-1-carboxylic acid | IC50 | 0.161 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| 4-hydroxy-2,2-dimethyl-4-[5-[4-methyl-6-[[4-(trifluoromethyl)-2-pyridinyl]amino]-2-pyridinyl]-1,3-thiazol-2-yl]cyclohexane-1-carboxylic acid | IC50 | 0.164 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| (4R)-4-[(1R)-1-[7-(1-methylpyrazol-4-yl)quinolin-5-yl]oxyethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8912173: Substituted quinolines and their use as medicaments |
| N-ethyl-N-[[4-[5-[(1R)-1-[(3R)-5-oxopyrrolidin-3-yl]ethoxy]quinolin-7-yl]phenyl]methyl]acetamide | IC50 | 0.2 nM | US-8912173: Substituted quinolines and their use as medicaments |
| (4R)-4-[(1R)-1-[7-(1-ethylpyrazol-4-yl)quinolin-5-yl]oxyethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8912173: Substituted quinolines and their use as medicaments |
| (4R)-4-[(1R)-1-[7-[4-(1-aminocyclopropyl)-3-chlorophenyl]quinolin-5-yl]oxyethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8912173: Substituted quinolines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3,4,5-trimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]ethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1S)-1-[[7-(3,4-dimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]-2,2,2-trifluoroethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[[7-(3,4-dimethoxyphenyl)-1,6-naphthyridin-5-yl]oxy]-3-methoxypropyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| (4R)-4-[(1R)-1-[(7-phenyl-1,6-naphthyridin-5-yl)oxy]ethyl]pyrrolidin-2-one | IC50 | 0.2 nM | US-8969568: Substituted naphthyridines and their use as medicaments |
| 5-{[(1R,2S)-2-aminocyclohexyl]amino}-3-(5-chloro-1H-indol-2-yl)pyrazine-2-carboxamide | IC50 | 0.2 nM | US-9775839: 2-pyrazine carboxamides as spleen tyrosine kinase inhibitors |
| 5-{[(3R,4R)-3- aminotetrahydro-2H-pyran-4- yl]amino}-3-(5-ethyl-1H- indol-2-yl)pyrazine-2- carboxamide | IC50 | 0.2 nM | US-9775839: 2-pyrazine carboxamides as spleen tyrosine kinase inhibitors |
| cis-(1S,4R)-4-[5-[6-[(5-chloro-4-methyl-2-pyridinyl)amino]-2-pyridinyl]-1,3-thiazol-2-yl]-4-hydroxy-2,2-dimethylcyclohexane-1-carboxylic acid | IC50 | 0.208 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-[(1-ethylindol-4-yl)amino]-1,2,4-triazine-6-carboxamide | IC50 | 0.21 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-[[1-(difluoromethyl)indol-4-yl]amino]-1,2,4-triazine-6-carboxamide | IC50 | 0.22 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
| BDBM302037 | IC50 | 0.228 nM | US-9598405: Thiazole-substituted aminopyridines as spleen tyrosine kinase inhibitors |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-[(2-methyl-7-phenylindazol-5-yl)amino]-1,2,4-triazine-6-carboxamide | IC50 | 0.23 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-[[1-(1-methylpyrazol-4-yl)indol-4-yl]amino]-1,2,4-triazine-6-carboxamide | IC50 | 0.26 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-[(2,4-dimethylindazol-6-yl)amino]-1,2,4-triazine-6-carboxamide | IC50 | 0.26 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
| 3-[[(1R,2S)-2-aminocyclohexyl]amino]-5-(1-benzothiophen-5-ylamino)-1,2,4-triazine-6-carboxamide | IC50 | 0.26 nM | US-9145414: 1,2,4-triazine-6-carboxamide derivative |
ChEMBL bioactivities
6100 potent at pChembl≥5 of 6100 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | IC50 | 0.01 | nM | CHEMBL3415598 |
| 10.52 | IC50 | 0.03 | nM | CHEMBL3622956 |
| 10.52 | IC50 | 0.03 | nM | CHEMBL4744190 |
| 10.34 | IC50 | 0.046 | nM | CHEMBL5425739 |
| 10.22 | IC50 | 0.06 | nM | CHEMBL3415583 |
| 10.22 | IC50 | 0.06 | nM | CHEMBL4780257 |
| 10.17 | IC50 | 0.067 | nM | CHEMBL5435311 |
| 10.15 | IC50 | 0.071 | nM | CHEMBL5775813 |
| 10.14 | IC50 | 0.072 | nM | CHEMBL5748905 |
| 10.14 | IC50 | 0.073 | nM | CHEMBL5788352 |
| 10.11 | IC50 | 0.077 | nM | CHEMBL4776352 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL5410717 |
| 10.07 | IC50 | 0.086 | nM | CHEMBL5739861 |
| 10.05 | IC50 | 0.09 | nM | CHEMBL4753469 |
| 10.04 | IC50 | 0.092 | nM | CHEMBL5868234 |
| 10.01 | IC50 | 0.098 | nM | CHEMBL4762995 |
| 10.01 | IC50 | 0.097 | nM | CHEMBL5831684 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3415589 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3415594 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3415606 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3657551 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3657550 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3653791 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3653846 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3653847 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3653776 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3695989 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696007 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696011 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696026 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696035 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696044 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696046 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3696047 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL3898524 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5985551 |
| 9.99 | IC50 | 0.103 | nM | CHEMBL5961927 |
| 9.98 | IC50 | 0.104 | nM | CHEMBL5925558 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL4753141 |
| 9.95 | IC50 | 0.113 | nM | CHEMBL5795831 |
| 9.92 | IC50 | 0.119 | nM | CHEMBL5952385 |
| 9.90 | IC50 | 0.127 | nM | CHEMBL5773271 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL4784088 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL5434339 |
| 9.89 | IC50 | 0.129 | nM | CHEMBL5921266 |
| 9.88 | IC50 | 0.133 | nM | STAUROSPORINE |
| 9.85 | IC50 | 0.14 | nM | CHEMBL4752008 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL4754597 |
| 9.82 | IC50 | 0.152 | nM | CHEMBL5923968 |
| 9.80 | IC50 | 0.158 | nM | CHEMBL5911374 |
PubChem BioAssay actives
1710 with measured affinity, of 4224 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[[6-methyl-2-(triazol-2-yl)pyrimidin-4-yl]amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | <0.0001 | uM |
| methyl 5-[[4-[5-[(dimethylamino)methyl]-1-methylpyrazol-3-yl]pyrimidin-2-yl]amino]-1,7-dimethylindazole-3-carboxylate | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | <0.0001 | uM |
| 17-hydroxy-10,13,24-trimethyl-2,4,8,9,13,14,20,23,24,33-decazahexacyclo[20.5.2.214,17.13,7.18,11.025,29]tritriaconta-1(28),3,5,7(33),9,11(32),22,25(29),26-nonaen-21-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | <0.0001 | uM |
| 1-[[1-[2-[(3-chloro-1,2-dimethylindol-5-yl)amino]pyrimidin-4-yl]-3-methylpyrazol-4-yl]methyl]azetidin-3-ol | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | <0.0001 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[[4,6-dimethyl-5-(1-methylpyrazol-4-yl)-2-pyridinyl]amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0001 | uM |
| N,N-dimethyl-1-[1-[2-(1-methyl-5-methylsulfonylindol-3-yl)-1H-imidazo[4,5-b]pyridin-7-yl]pyrazol-4-yl]methanamine | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0001 | uM |
| 5-[[4-[4-[(dimethylamino)methyl]-3-fluoropyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0001 | uM |
| 5-[[4-[4-[(dimethylamino)methyl]-3-methoxypyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0001 | uM |
| 7-[[4-[4-[(dimethylamino)methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N-methylimidazo[1,5-a]pyridine-1-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0001 | uM |
| 3-[7-[4-[(dimethylamino)methyl]pyrazol-1-yl]-1H-imidazo[4,5-b]pyridin-2-yl]-N,1-dimethylindole-5-carboxamide | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0001 | uM |
| N,N-dimethyl-1-[3-methyl-1-[2-[1-methyl-5-(5-methyl-1,3,4-oxadiazol-2-yl)indol-3-yl]-1H-imidazo[4,5-b]pyridin-7-yl]pyrazol-4-yl]methanamine | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0001 | uM |
| 5-[[4-[4-[(3-hydroxyazetidin-1-yl)methyl]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0001 | uM |
| N-[4-[5-[(dimethylamino)methyl]-1-methylpyrazol-3-yl]pyrimidin-2-yl]-1-methyl-3-(5-methyl-1,3,4-oxadiazol-2-yl)indazol-5-amine | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0001 | uM |
| 23-[(2R)-2-hydroxypropyl]-10,13-dimethyl-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0001 | uM |
| 10,13,24-trimethyl-2,4,8,9,13,14,20,23,24,33-decazahexacyclo[20.5.2.214,17.13,7.18,11.025,29]tritriaconta-1(28),3,5,7(33),9,11(32),22,25(29),26-nonaen-21-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0001 | uM |
| 10,13,23-trimethyl-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0001 | uM |
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1715153: Inhibition of human SYK using poly[Glu:Tyr] (4:1) as substrate by [gamma-33P]-ATP assay | ic50 | 0.0001 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[(4,6-dimethyl-2-pyridinyl)amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0001 | uM |
| 5-[[(3S,4S)-4-amino-1,1-dioxothian-3-yl]amino]-3-[(4,6-dimethyl-2-pyridinyl)amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0001 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[[6-(triazol-2-yl)-2-pyridinyl]amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0001 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[[6-(2-hydroxy-2-methylpropoxy)-2-methylpyrimidin-4-yl]amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0002 | uM |
| N-[4-[5-[(dimethylamino)methyl]-1-methylpyrazol-3-yl]pyrimidin-2-yl]-3-methyl-1-(5-methyl-1,3,4-oxadiazol-2-yl)imidazo[1,5-a]pyridin-7-amine | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0002 | uM |
| 7-[[4-[4-[(dimethylamino)methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,3-dimethylimidazo[1,5-a]pyridine-1-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| (3R,4R)-4-N-[1-[2-(1-methylindol-4-yl)-1H-imidazo[4,5-b]pyridin-7-yl]pyrazol-4-yl]oxane-3,4-diamine | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| N-[3-[7-[4-[(dimethylamino)methyl]-3-methylpyrazol-1-yl]-1H-imidazo[4,5-b]pyridin-2-yl]-1-methylindol-5-yl]acetamide | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| (3R,4R)-4-N-[3-methyl-1-[2-[[1-methyl-3-(5-methyl-1,3,4-oxadiazol-2-yl)indazol-5-yl]amino]pyrimidin-4-yl]pyrazol-4-yl]oxane-3,4-diamine | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| 3-[7-[4-[(dimethylamino)methyl]pyrazol-1-yl]-1H-imidazo[4,5-b]pyridin-2-yl]-N,1-dimethylpyrrolo[2,3-c]pyridine-5-carboxamide | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| N,1-dimethyl-5-[[4-[3-methyl-4-[(3R)-piperidin-3-yl]oxypyrazol-1-yl]pyrimidin-2-yl]amino]indazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| N-[4-[5-[(dimethylamino)methyl]-1-methylpyrazol-3-yl]pyrimidin-2-yl]-1-(5-methyl-1,3,4-oxadiazol-2-yl)imidazo[1,5-a]pyridin-7-amine | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| 5-[[4-[4-[(dimethylamino)methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,1,7-trimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0002 | uM |
| 7-[[4-[4-(2-aminoethylamino)pyrazol-1-yl]pyrimidin-2-yl]amino]-N,3-dimethylimidazo[1,5-a]pyridine-1-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| 7-[[4-[4-[(2S,4S)-4-hydroxy-1-methylpyrrolidin-2-yl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,3-dimethylimidazo[1,5-a]pyridine-1-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0002 | uM |
| 5-[[4-[4-[(dimethylamino)methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0002 | uM |
| 7-[[4-[4-[(2S,4R)-4-fluoro-1-methylpyrrolidin-2-yl]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,3-dimethylimidazo[1,5-a]pyridine-1-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0002 | uM |
| 1-[5-[[4-[4-[[(3R,4R)-3-aminooxan-4-yl]amino]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-1-methylindol-3-yl]-2,2,2-trifluoroethanone | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0002 | uM |
| 10,13-dimethyl-23-(oxetan-3-yl)-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0002 | uM |
| 23-[(2S)-2-hydroxypropyl]-10,13-dimethyl-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0002 | uM |
| 5-[[4-[4-[(dimethylamino)methyl]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1674803: Inhibition of SYK (unknown origin) | ic50 | 0.0003 | uM |
| 5-[[4-[4-[[(3S,4S)-4-fluoropyrrolidin-3-yl]amino]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0003 | uM |
| 5-[[4-[4-[[(3R,4R)-3-aminooxan-4-yl]amino]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0003 | uM |
| 5-[[4-[4-[(1-aminocyclopropyl)methylamino]-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0003 | uM |
| 5-[[4-[4-[[(3R,4R)-3-aminooxan-4-yl]amino]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0003 | uM |
| 5-[[4-[5-[(dimethylamino)methyl]-1-methylpyrazol-3-yl]pyrimidin-2-yl]amino]-N,1,7-trimethylindazole-3-carboxamide | 1681023: Inhibition of recombinant full length SYK (unknown origin) by biochemical Omnia assay | ic50 | 0.0003 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-[[4-(3-hydroxy-3-methylbutyl)-6-methyl-2-pyridinyl]amino]pyridine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0004 | uM |
| 7-[[4-[4-[[(3R,4R)-3-aminooxan-4-yl]amino]pyrazol-1-yl]pyrimidin-2-yl]amino]-N,3-dimethylimidazo[1,5-a]pyridine-1-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0004 | uM |
| 5-[[4-[4-[(3S,4R)-4-fluoropyrrolidin-3-yl]oxy-3-methylpyrazol-1-yl]pyrimidin-2-yl]amino]-N,1-dimethylindazole-3-carboxamide | 1696665: Inhibition of SYK (unknown origin) | ic50 | 0.0004 | uM |
| 23-(2-hydroxy-2-methylpropyl)-10,13-dimethyl-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0004 | uM |
| 23-(2-hydroxyethyl)-10,13-dimethyl-16-oxa-2,4,8,9,13,19,22,23,30-nonazapentacyclo[19.5.2.13,7.18,11.024,28]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one | 2011922: Inhibition of full length recombinant human SYK | ic50 | 0.0004 | uM |
| 6-(1H-indazol-6-yl)-N-(3-methoxy-4-morpholin-4-ylphenyl)imidazo[1,2-a]pyrazin-8-amine | 1142338: Inhibition of full length Syk (unknown origin) using biotinylated peptide substrate | ic50 | 0.0004 | uM |
| 5-[[(1R,2S)-2-aminocyclohexyl]amino]-3-(1H-indol-2-yl)pyrazine-2-carboxamide | 1199532: Inhibition of full-length GST-tagged human Syk preincubated for 10 mins followed by peptide substrate/ATP addition measured after 45 mins by TR-FRET assay | ic50 | 0.0005 | uM |
CTD chemical–gene interactions
70 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression | 7 |
| bisphenol A | decreases reaction, increases phosphorylation, decreases expression, decreases methylation | 5 |
| (+)-JQ1 compound | decreases expression | 3 |
| Resveratrol | increases expression, affects binding, decreases reaction, increases reaction, increases phosphorylation (+2 more) | 3 |
| Plant Extracts | affects cotreatment, increases expression, decreases phosphorylation, decreases expression, increases abundance | 3 |
| 3,3’,4,5’-tetrahydroxystilbene | decreases reaction, increases phosphorylation, decreases abundance, decreases activity | 2 |
| entinostat | increases expression, affects cotreatment | 2 |
| Arsenic Trioxide | increases phosphorylation, increases expression, decreases reaction | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Nickel | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression | 2 |
| Tretinoin | decreases expression, increases expression | 2 |
| bisphenol F | decreases methylation | 1 |
| biochanin A | increases phosphorylation, decreases reaction | 1 |
| triphenyl phosphate | affects expression | 1 |
| bis(tri-n-butyltin)oxide | increases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| tributyltin | increases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| ochratoxin A | increases expression | 1 |
| 3,4,3’,4’-tetrachlorobiphenyl | affects expression | 1 |
| convulxin | decreases reaction, increases reaction, affects reaction, increases phosphorylation, affects binding | 1 |
| methacrylaldehyde | affects cotreatment, decreases expression | 1 |
| phosphatidylinositol 3,4,5-triphosphate | decreases abundance, decreases activity | 1 |
| spiraeoside | decreases phosphorylation | 1 |
| 2-propylthio-D-beta,gamma-difluoromethylene ATP | affects reaction, increases phosphorylation | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
ChEMBL screening assays
873 unique, capped per target: 863 binding, 10 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1019643 | Binding | Inhibition of SYK at 1 uM | Pyranonaphthoquinone lactones: a new class of AKT selective kinase inhibitors alkylate a regulatory loop cysteine. — J Med Chem |
| CHEMBL1963712 | Functional | PUBCHEM_BIOASSAY: Navigating the Kinome. (Class of assay: other) Panel member name: SYK | PubChem BioAssay data set |
Cellosaurus cell lines
92 cell lines: 89 cancer cell line, 2 transformed cell line, 1 spontaneously immortalized cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_0354 | J.CaM1.6 | Cancer cell line | Male |
| CVCL_0367 | Jurkat E6.1 | Cancer cell line | Male |
| CVCL_1316 | J.RT3-T3.5 | Cancer cell line | Male |
| CVCL_2530 | J45.01 | Cancer cell line | Male |
| CVCL_6410 | J.gamma1 | Cancer cell line | Male |
| CVCL_6411 | J.gamma1.WT | Cancer cell line | Male |
| CVCL_6429 | P116 | Cancer cell line | Male |
| CVCL_6430 | P116.cl39 | Cancer cell line | Male |
| CVCL_6819 | 10B10 | Cancer cell line | Male |
| CVCL_A9P4 | BPS Bioscience Jurkat E6.1 NF-kappaB-driven luciferase reporter | Cancer cell line | Male |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT02687724 | PHASE4 | UNKNOWN | Golimumab (GLM) Dose Optimisation to Adequate Levels to Achieve Response in Colitis |
| NCT00180206 | PHASE4 | UNKNOWN | Birmingham Hip Resurfacing (BHR) Study: Implantation of a Hip Resurfacing Endoprosthesis |
| NCT00236366 | PHASE4 | COMPLETED | A Study of the Effect on Pain Control of Treatment With Fentanyl, Administered Through the Skin, Compared With Placebo in Patients With Osteoarthritis |
| NCT00291915 | PHASE4 | UNKNOWN | Multicenter Randomized Prospective Trial Comparing Methotrexate Alone or in Combination With Adalimumab in Early Arthritis |
| NCT00510536 | PHASE4 | COMPLETED | Treatment of Mild to Moderate Joint Pain in Patients With Chronic Plaque Psoriasis Receiving Efalizumab |
| NCT00524160 | PHASE4 | COMPLETED | A Study of the Effect on Pain Control of Treatment With Fentanyl, Administered Through the Skin, in Patients With Rheumatoid Arthritis or Osteoarthritis |
| NCT00696059 | PHASE4 | COMPLETED | Humira in Rheumatoid Arthritis - Do Bone Erosions Heal? |
| NCT01027286 | PHASE4 | COMPLETED | Prospective Evaluation of Vitagel for Reduction in Blood Loss and Pain Following Unilateral Total Knee Arthroplasty |
| NCT01264965 | PHASE4 | TERMINATED | Non-cancer Pain and Cognitive Impairment: A Disabling Relationship |
| NCT01270620 | PHASE4 | COMPLETED | Desflurane or Propofol Anesthesia in Elderly Obese Patients Undergoing Total Knee Replacement |
| NCT01275014 | PHASE4 | UNKNOWN | Corticosteroids as Additive in Temporomandibular Joint (TMJ) Arthrocentesis |
| NCT01414569 | PHASE4 | COMPLETED | Dexamethasone for Pain After Shoulder Surgery |
| NCT02011464 | PHASE4 | COMPLETED | Evaluation Exparel Delivered in Knee Replacement |
| NCT02697955 | PHASE4 | COMPLETED | The Effect of Subsartorial Saphenous Block on Postoperative Pain Following Major Ankle and Hind Foot Surgery |
| NCT02926651 | PHASE4 | WITHDRAWN | Single Versus Multi-Dose Oral Tranexamic Acid in Patients at High Risk for Blood Transfusion After Total Joint Arthroplasty |
| NCT03659318 | PHASE4 | COMPLETED | Robotic-Assisted Versus Conventional Total Knee Arthroplasty(TKA) |
| NCT01369329 | PHASE3 | COMPLETED | A Study to Evaluate the Safety and Efficacy of Ustekinumab in Patients With Moderately to Severely Active Crohn’s Disease Who Have Failed or Are Intolerant to Tumor Necrosis Factor (TNF) Antagonist Therapy (UNITI-1) |
| NCT01369342 | PHASE3 | COMPLETED | A Study to Evaluate the Safety and Efficacy of Ustekinumab Induction Therapy in Patients With Moderately to Severely Active Crohn’s Disease (UNITI-2) |
| NCT01369355 | PHASE3 | COMPLETED | A Study to Evaluate the Safety and Efficacy of Ustekinumab Maintenance Therapy in Patients With Moderately to Severely Active Crohn’s Disease (IM-UNITI) |
| NCT05947669 | PHASE3 | RECRUITING | Efficacy and Safety of Infliximab for Immune Checkpoint Inhibitor Induced Colitis |
| NCT00153660 | PHASE3 | COMPLETED | Celecoxib Versus Naproxen for Prevention of Recurrent Ulcer Bleeding in Arthritis Patients |
| NCT00153673 | PHASE3 | COMPLETED | Effect of Selective COX-2 Inhibition on Ulcer Healing |
| NCT00211718 | PHASE3 | UNKNOWN | Intra-Articular Injection of Botulinum Toxin Type A for Shoulder Pain |
| NCT00313365 | PHASE3 | WITHDRAWN | Surgical Lavage vs Serial Needle Aspiration for Infected Joints |
| NCT00365313 | PHASE3 | COMPLETED | Preventing Recurrent Ulcer Bleeding in Arthritis Patients Using Esomeprazole Plus Celecoxib |
| NCT00526201 | PHASE3 | COMPLETED | Help Arthritis With Exercise in West Virginia |
| NCT00526435 | PHASE3 | COMPLETED | Evaluation of Walk With Ease in Arthritis |
| NCT00646178 | PHASE3 | COMPLETED | Study of the Safety and Efficacy of Adalimumab in Subjects With Moderate to Severely Active Psoriatic Arthritis Subjects With Inadequate Response to Disease Modifying Anti-Rheumatic Drug Therapy |
| NCT00733902 | PHASE3 | COMPLETED | Tanezumab in Osteoarthritis of the Knee |
| NCT00744471 | PHASE3 | COMPLETED | Tanezumab in Osteoarthritis Of The Hip |
| NCT00765362 | PHASE3 | COMPLETED | Mobile - Bearing Knee Study |
| NCT00784277 | PHASE3 | COMPLETED | A Study to Compare the Frequency of Constipation Symptoms With Tapentadol Immediate Release (IR) Treatment Versus Oxycodone IR Treatment in Patients With End-stage Joint Disease |
| NCT00809354 | PHASE3 | TERMINATED | Long-Term Analgesic Efficacy And Safety Of Tanezumab Alone Or In Combination With Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) Versus NSAIDs Alone In Patients With Osteoarthritis Of The Knee Or Hip |
| NCT00830063 | PHASE3 | COMPLETED | Tanezumab In Osteoarthritis Of The Knee (2) |
| NCT01004432 | PHASE3 | COMPLETED | Golimumab in Rheumatoid Arthritis Participants With an Inadequate Response to Etanercept (ENBREL) or Adalimumab (HUMIRA) |
| NCT01089725 | PHASE3 | TERMINATED | Efficacy And Safety Study Of Tanezumab Subcutaneous Administration In Osteoarthritis - A Subcutaneous/Intravenous Bridging Study |
Related Atlas pages
- Associated diseases: immunodeficiency 82 with systemic inflammation, ovarian carcinoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Paclitaxel
- Targeted by drugs: Entospletinib, Lazertinib, Sovleplenib
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Alzheimer disease, arthritic joint disease, atrial fibrillation, colitis, immunodeficiency 82 with systemic inflammation, immunodeficiency disease, long QT syndrome, multiple sclerosis, ovarian cancer, ovarian carcinoma, type 2 diabetes mellitus, vascular dementia