SYN3-AS1

Summary

SYN3-AS1 (SYN3 antisense RNA 1, HGNC:40569) is a long non-coding RNA gene on chromosome 22q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40569
Approved symbol	SYN3-AS1
Name	SYN3 antisense RNA 1
Location	22q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236054
Ensembl biotype	lncRNA
Entrez	105373004
RNAcentral	URS0002A196B3 — lncRNA, 558 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000428201, ENST00000766374

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000428201 — 2 exons

Exon	Start	End
ENSE00001610613	32583300	32583428
ENSE00001706039	32583877	32584204

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 94.39.

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.39	gold quality
hindlimb stylopod muscle	UBERON:0004252	74.74	gold quality
spleen	UBERON:0002106	74.49	gold quality
cortical plate	UBERON:0005343	74.24	gold quality
right testis	UBERON:0004534	69.82	gold quality
sural nerve	UBERON:0015488	68.78	gold quality
left testis	UBERON:0004533	68.38	gold quality
adrenal tissue	UBERON:0018303	68.20	gold quality
testis	UBERON:0000473	67.97	gold quality
right lung	UBERON:0002167	66.69	gold quality
ganglionic eminence	UBERON:0004023	66.63	gold quality
superior frontal gyrus	UBERON:0002661	65.95	gold quality
placenta	UBERON:0001987	64.46	gold quality
liver	UBERON:0002107	58.82	gold quality
tonsil	UBERON:0002372	58.65	silver quality
islet of Langerhans	UBERON:0000006	58.26	gold quality
Brodmann (1909) area 9	UBERON:0013540	57.99	gold quality
calcaneal tendon	UBERON:0003701	57.86	silver quality
cortex of kidney	UBERON:0001225	57.38	gold quality
thoracic mammary gland	UBERON:0005200	57.17	gold quality
kidney	UBERON:0002113	56.88	gold quality
primary visual cortex	UBERON:0002436	56.73	gold quality
prefrontal cortex	UBERON:0000451	56.65	gold quality
omental fat pad	UBERON:0010414	56.65	gold quality
adult mammalian kidney	UBERON:0000082	56.61	gold quality
lung	UBERON:0002048	56.56	gold quality
right lobe of liver	UBERON:0001114	55.70	gold quality
upper lobe of left lung	UBERON:0008952	55.64	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.35	gold quality
adipose tissue	UBERON:0001013	55.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.