SYNE3-AS1

Summary

SYNE3-AS1 (SYNE3 antisense RNA 1, HGNC:56940) is a long non-coding RNA gene on chromosome 14q32.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56940
Approved symbol	SYNE3-AS1
Name	SYNE3 antisense RNA 1
Location	14q32.13
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL133467.1
Ensembl gene	ENSG00000258572
Ensembl biotype	lncRNA
Entrez	101929107
RNAcentral	URS00026A21B8 — lncRNA, 1009 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000554161

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554161 — 2 exons

Exon	Start	End
ENSE00004057026	95516116	95516220
ENSE00004057027	95517004	95517913

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 76.44.

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	76.44	gold quality
tonsil	UBERON:0002372	70.65	gold quality
subcutaneous adipose tissue	UBERON:0002190	68.42	gold quality
bone marrow	UBERON:0002371	68.04	gold quality
colonic epithelium	UBERON:0000397	67.74	silver quality
adipose tissue	UBERON:0001013	67.53	gold quality
lymph node	UBERON:0000029	67.14	gold quality
sural nerve	UBERON:0015488	67.13	gold quality
spleen	UBERON:0002106	67.06	gold quality
omental fat pad	UBERON:0010414	66.42	gold quality
vermiform appendix	UBERON:0001154	65.95	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.44	gold quality
leukocyte	CL:0000738	64.44	gold quality
right coronary artery	UBERON:0001625	64.38	gold quality
monocyte	CL:0000576	64.10	gold quality
granulocyte	CL:0000094	63.34	gold quality
tibial nerve	UBERON:0001323	63.18	gold quality
thoracic mammary gland	UBERON:0005200	62.94	gold quality
apex of heart	UBERON:0002098	62.23	gold quality
blood	UBERON:0000178	61.75	gold quality
left coronary artery	UBERON:0001626	61.71	gold quality
calcaneal tendon	UBERON:0003701	60.41	gold quality
ganglionic eminence	UBERON:0004023	60.19	gold quality
skeletal muscle tissue	UBERON:0001134	59.54	gold quality
tibial artery	UBERON:0007610	59.33	gold quality
popliteal artery	UBERON:0002250	59.30	gold quality
liver	UBERON:0002107	58.87	gold quality
muscle tissue	UBERON:0002385	58.36	gold quality
right atrium auricular region	UBERON:0006631	56.99	gold quality
mucosa of stomach	UBERON:0001199	56.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.