SYNPO2L
geneOn this page
Also known as FLJ12921
Summary
SYNPO2L (synaptopodin 2 like, HGNC:23532) is a protein-coding gene on chromosome 10q22.2, encoding Synaptopodin 2-like protein (Q9H987). Actin-associated protein that may play a role in modulating actin-based shape.
Predicted to enable actin binding activity. Predicted to be involved in several processes, including positive regulation of Rho protein signal transduction; positive regulation of stress fiber assembly; and sarcomere organization. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in Z disc; actin cytoskeleton; and nucleus.
Source: NCBI Gene 79933 — RefSeq curated summary.
At a glance
- GWAS associations: 25
- Clinical variants (ClinVar): 141 total
- MANE Select transcript:
NM_001114133
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23532 |
| Approved symbol | SYNPO2L |
| Name | synaptopodin 2 like |
| Location | 10q22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ12921 |
| Ensembl gene | ENSG00000166317 |
| Ensembl biotype | protein_coding |
| Entrez | 79933 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000372873, ENST00000394810, ENST00000606523
RefSeq mRNA: 2 — MANE Select: NM_001114133
NM_001114133, NM_024875
CCDS: CCDS44438, CCDS7331
Canonical transcript exons
ENST00000394810 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001458860 | 73653139 | 73653653 |
| ENSE00001458861 | 73654129 | 73654280 |
| ENSE00001519656 | 73655818 | 73656029 |
| ENSE00003847269 | 73644886 | 73648879 |
Expression profiles
Bgee: expression breadth ubiquitous, 167 present calls, max score 98.87.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.5287 / max 236.8828, expressed in 158 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 110099 | 0.7774 | 78 |
| 110094 | 0.4361 | 98 |
| 110101 | 0.2519 | 43 |
| 110096 | 0.0174 | 8 |
| 110095 | 0.0169 | 10 |
| 110100 | 0.0155 | 12 |
| 110102 | 0.0135 | 6 |
Top tissues by expression
274 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.87 | gold quality |
| apex of heart | UBERON:0002098 | 98.85 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.42 | gold quality |
| biceps brachii | UBERON:0001507 | 98.40 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.04 | gold quality |
| heart right ventricle | UBERON:0002080 | 97.92 | gold quality |
| myocardium | UBERON:0002349 | 97.79 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 97.75 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 97.65 | gold quality |
| quadriceps femoris | UBERON:0001377 | 97.61 | gold quality |
| gluteal muscle | UBERON:0002000 | 97.50 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 97.07 | gold quality |
| body of tongue | UBERON:0011876 | 96.99 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 96.95 | gold quality |
| cardiac atrium | UBERON:0002081 | 96.93 | gold quality |
| cardiac ventricle | UBERON:0002082 | 96.90 | gold quality |
| heart left ventricle | UBERON:0002084 | 96.85 | gold quality |
| right atrium auricular region | UBERON:0006631 | 96.75 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.51 | gold quality |
| vena cava | UBERON:0004087 | 96.33 | gold quality |
| deltoid | UBERON:0001476 | 95.90 | gold quality |
| muscle organ | UBERON:0001630 | 95.75 | gold quality |
| tibialis anterior | UBERON:0001385 | 95.07 | gold quality |
| muscle of leg | UBERON:0001383 | 95.04 | gold quality |
| triceps brachii | UBERON:0001509 | 94.87 | gold quality |
| muscle tissue | UBERON:0002385 | 93.61 | gold quality |
| heart | UBERON:0000948 | 92.58 | gold quality |
| tongue | UBERON:0001723 | 89.88 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 87.19 | gold quality |
| superior surface of tongue | UBERON:0007371 | 85.67 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.08 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
95 targeting SYNPO2L, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-6783-3P | 99.89 | 67.92 | 2059 |
| HSA-MIR-1343-3P | 99.89 | 66.78 | 1815 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-6715A-3P | 99.83 | 68.05 | 1473 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-4713-5P | 99.78 | 67.80 | 1794 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-6745 | 99.74 | 65.33 | 1321 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-5093 | 99.67 | 69.26 | 2291 |
| HSA-MIR-10393-5P | 99.65 | 68.01 | 1368 |
| HSA-MIR-6848-3P | 99.64 | 66.49 | 885 |
| HSA-MIR-298 | 99.63 | 67.56 | 1916 |
| HSA-MIR-4756-3P | 99.62 | 66.30 | 1319 |
| HSA-MIR-4516 | 99.61 | 67.78 | 3390 |
Literature-anchored findings (GeneRIF, showing 2)
- we did not observe associations between coding genetic variants and Atrial fibrillation (AF), suggesting that large-effect coding variation is not the predominant mechanism underlying AF. A coding variant in SYNPO2L requires further evaluation to determine whether it is causally related to AF (PMID:27589061)
- METTL16 Promotes Stability of SYNPO2L mRNA and leading to Cancer Cell Lung Metastasis by Secretion of COL10A1 and attract the Cancer-Associated Fibroblasts. (PMID:39247832)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | synpo2la | ENSDARG00000077293 |
| danio_rerio | synpo2lb | ENSDARG00000078696 |
| mus_musculus | Synpo2l | ENSMUSG00000039376 |
| rattus_norvegicus | Synpo2l | ENSRNOG00000008949 |
| drosophila_melanogaster | CG1674 | FBGN0039897 |
Paralogs (2): SYNPO (ENSG00000171992), SYNPO2 (ENSG00000172403)
Protein
Protein identifiers
Synaptopodin 2-like protein — Q9H987 (reviewed: Q9H987)
All UniProt accessions (2): Q9H987, U3KQD0
UniProt curated annotations — full annotation on UniProt →
Function. Actin-associated protein that may play a role in modulating actin-based shape.
Subcellular location. Cytoplasm. Cytoskeleton.
Similarity. Belongs to the synaptopodin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9H987-1 | 1 | yes |
| Q9H987-2 | 2 |
RefSeq proteins (2): NP_001107605, NP_079151 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001478 | PDZ | Domain |
| IPR036034 | PDZ_sf | Homologous_superfamily |
| IPR051976 | Synaptopodin_domain | Family |
Pfam: PF00595
UniProt features (59 total): modified residue 34, compositionally biased region 12, region of interest 5, sequence variant 3, splice variant 2, chain 1, domain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9H987-F1 | 53.10 | 0.12 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (34): 108, 111, 141, 143, 178, 180, 345, 350, 374, 381, 384, 386, 466, 469, 479, 670, 678, 705, 713, 757 …
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 143 (showing top):
GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, MYOGENIN_Q6, GOBP_POSITIVE_REGULATION_OF_RHO_PROTEIN_SIGNAL_TRANSDUCTION, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, MEF2_02, GOBP_POSITIVE_REGULATION_OF_ORGANELLE_ORGANIZATION, GOBP_SARCOMERE_ORGANIZATION, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, GNF2_MYL3, GOBP_REGULATION_OF_ACTIN_FILAMENT_BASED_PROCESS, CHEN_LVAD_SUPPORT_OF_FAILING_HEART_UP, GOBP_ANIMAL_ORGAN_MORPHOGENESIS
GO Biological Process (5): heart morphogenesis (GO:0003007), positive regulation of actin filament bundle assembly (GO:0032233), positive regulation of Rho protein signal transduction (GO:0035025), sarcomere organization (GO:0045214), positive regulation of stress fiber assembly (GO:0051496)
GO Molecular Function (2): actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), actin cytoskeleton (GO:0015629), Z disc (GO:0030018), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), organelle (GO:0043226)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| heart development | 1 |
| animal organ morphogenesis | 1 |
| regulation of actin filament bundle assembly | 1 |
| positive regulation of cellular component biogenesis | 1 |
| actin filament bundle assembly | 1 |
| positive regulation of cytoskeleton organization | 1 |
| positive regulation of supramolecular fiber organization | 1 |
| Rho protein signal transduction | 1 |
| regulation of Rho protein signal transduction | 1 |
| positive regulation of small GTPase mediated signal transduction | 1 |
| myofibril assembly | 1 |
| actomyosin structure organization | 1 |
| positive regulation of actin filament bundle assembly | 1 |
| stress fiber assembly | 1 |
| regulation of stress fiber assembly | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoskeleton | 1 |
| I band | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
858 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| SYNPO2L | ZFHX3 | Q15911 | 692 |
| SYNPO2L | MYOZ1 | Q9NP98 | 677 |
| SYNPO2L | AOPEP | Q8N6M6 | 608 |
| SYNPO2L | SYNE2 | Q8WXH0 | 581 |
| SYNPO2L | CAND2 | O75155 | 581 |
| SYNPO2L | TBX3 | O15119 | 568 |
| SYNPO2L | HCN4 | Q9Y3Q4 | 530 |
| SYNPO2L | PRRX1 | P54821 | 512 |
| SYNPO2L | WDTC1 | Q8N5D0 | 485 |
| SYNPO2L | PITX2 | Q99697 | 479 |
| SYNPO2L | KCNN3 | Q9UGI6 | 476 |
| SYNPO2L | NEURL1 | O76050 | 471 |
| SYNPO2L | RPL3L | Q92901 | 434 |
| SYNPO2L | WNT8A | Q9H1J5 | 419 |
| SYNPO2L | CCDC197 | Q8NCU1 | 400 |
IntAct
30 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| E | SYNPO2L | psi-mi:“MI:0915”(physical association) | 0.590 |
| ABCC4 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ARHGEF16 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ASIC3 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ATP2B4 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CYSLTR2 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DGKK | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DGKZ | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DOCK4 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FRMPD4 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| FZD7 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TAMALIN | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| E6 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ORF putative E6 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SYNPO2L | E6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNA5 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KIR3DL3 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| MAP2K2 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PBK | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| RALBP1 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| RASSF6 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SLC15A5 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SLCO1C1 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TJP2 | SYNPO2L | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SYNPO2L | Dlg4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SYNPO2L | TOMM20 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TBC1D2B | CEP120 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (12): SYNPO2L (Two-hybrid), SYNPO2L (Two-hybrid), SYNPO2L (Two-hybrid), SYNPO2L (Two-hybrid), SYNPO2L (Two-hybrid), GOLGA2 (Two-hybrid), ACTN3 (Two-hybrid), SYNPO2L (Proximity Label-MS), SYNPO2L (Affinity Capture-MS), SYNPO2L (Protein-peptide), SYNPO2L (Cross-Linking-MS (XL-MS)), SYNPO2L (Protein-peptide)
ESM2 similar proteins: D3ZQL6, D4A702, E7F568, E9Q0S6, O35867, O54916, O54931, P19973, Q08495, Q08DM1, Q09YM8, Q1LVV0, Q2MJV9, Q3UH68, Q3UIL6, Q4KM62, Q4PS85, Q5NBX1, Q5R4B6, Q5RBH3, Q5RG44, Q5RHU7, Q5U301, Q68CZ2, Q6P4R8, Q6PIJ4, Q80Z38, Q8BWB1, Q8C5R2, Q8CC35, Q8IVT2, Q8K382, Q8N3V7, Q91YE8, Q96D71, Q9D067, Q9D279, Q9GLM4, Q9H987, Q9HBL0
Diamond homologs: A1ZA47, A2ALU4, A5H447, D4A702, E1BKA3, O00151, O14639, O43294, O60711, O70209, O70400, O75112, O94929, P20271, P48059, P49023, P49024, P50464, P52944, Q09476, Q0WSN2, Q13796, Q15942, Q1JQB5, Q2KJ33, Q2TCH4, Q2YDK0, Q3MHZ4, Q3SX26, Q3SX40, Q3SYZ8, Q3T0X8, Q3TJD7, Q55BI0, Q5F464, Q5R7I1, Q5RCF7, Q5TD97, Q5U2Z2, Q5XI07
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
141 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 137 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1043 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:73654128:CCG:C | donor_gain | 1.0000 |
| 10:73648880:C:CC | acceptor_gain | 0.9900 |
| 10:73653138:CTGG:C | donor_gain | 0.9900 |
| 10:73654155:T:TA | donor_gain | 0.9900 |
| 10:73654286:A:AC | acceptor_gain | 0.9900 |
| 10:73654286:A:C | acceptor_gain | 0.9900 |
| 10:73648875:CAGTT:C | acceptor_gain | 0.9800 |
| 10:73648878:TTCTG:T | acceptor_loss | 0.9800 |
| 10:73648879:TCTGG:T | acceptor_loss | 0.9800 |
| 10:73648880:C:CA | acceptor_loss | 0.9800 |
| 10:73648881:T:A | acceptor_loss | 0.9800 |
| 10:73655813:CTTAC:C | donor_loss | 0.9800 |
| 10:73655814:TTAC:T | donor_loss | 0.9800 |
| 10:73655816:A:T | donor_loss | 0.9800 |
| 10:73655817:CCT:C | donor_loss | 0.9800 |
| 10:73655929:G:C | donor_gain | 0.9800 |
| 10:73648877:GTT:G | acceptor_gain | 0.9700 |
| 10:73650673:A:AC | donor_gain | 0.9700 |
| 10:73650674:C:CC | donor_gain | 0.9700 |
| 10:73650674:CACA:C | donor_gain | 0.9700 |
| 10:73653137:A:AC | donor_gain | 0.9700 |
| 10:73653138:C:CC | donor_gain | 0.9700 |
| 10:73653316:CACGG:C | donor_gain | 0.9700 |
| 10:73654127:A:AC | donor_gain | 0.9700 |
| 10:73654128:C:CC | donor_gain | 0.9700 |
| 10:73654280:TC:T | acceptor_loss | 0.9700 |
| 10:73654281:C:CG | acceptor_loss | 0.9700 |
| 10:73654282:T:G | acceptor_loss | 0.9700 |
| 10:73654289:T:C | acceptor_gain | 0.9700 |
| 10:73654289:T:TC | acceptor_gain | 0.9700 |
AlphaMissense
6176 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:73648758:A:C | F298L | 1.000 |
| 10:73648758:A:T | F298L | 1.000 |
| 10:73648759:A:G | F298S | 1.000 |
| 10:73648760:A:G | F298L | 1.000 |
| 10:73648759:A:C | F298C | 0.999 |
| 10:73648801:A:G | L284P | 0.999 |
| 10:73648801:A:T | L284H | 0.999 |
| 10:73648804:A:G | L283P | 0.999 |
| 10:73648813:A:T | I280N | 0.999 |
| 10:73655867:A:G | F19S | 0.999 |
| 10:73648747:C:G | R302P | 0.998 |
| 10:73648760:A:C | F298V | 0.998 |
| 10:73648760:A:T | F298I | 0.998 |
| 10:73648772:C:G | G294R | 0.998 |
| 10:73648772:C:T | G294R | 0.998 |
| 10:73648813:A:C | I280S | 0.998 |
| 10:73647257:A:G | W799R | 0.997 |
| 10:73647257:A:T | W799R | 0.997 |
| 10:73648740:T:A | R304S | 0.997 |
| 10:73648740:T:G | R304S | 0.997 |
| 10:73648765:A:G | L296P | 0.997 |
| 10:73648773:T:A | K293N | 0.997 |
| 10:73648773:T:G | K293N | 0.997 |
| 10:73648811:C:G | A281P | 0.997 |
| 10:73654246:A:G | L47P | 0.997 |
| 10:73655866:G:C | F19L | 0.997 |
| 10:73655866:G:T | F19L | 0.997 |
| 10:73655868:A:G | F19L | 0.997 |
| 10:73655874:A:G | W17R | 0.997 |
| 10:73655874:A:T | W17R | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000261009 (10:73648745 G>A), RS1000630062 (10:73646854 G>T), RS1000878347 (10:73656242 A>T), RS1001060689 (10:73653757 G>A), RS1001377793 (10:73652434 C>T), RS1001407150 (10:73651949 C>T), RS1001483278 (10:73651286 G>A), RS1002214390 (10:73650695 T>A), RS1002535213 (10:73652494 C>T), RS1002545069 (10:73652177 G>A), RS1002770334 (10:73657003 G>A), RS1002941839 (10:73657339 A>G,T), RS1003801727 (10:73647073 G>A,T), RS1003989254 (10:73649664 C>A,G), RS1004004429 (10:73656010 C>A)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001499_8 | Atrial fibrillation | 4.000000e-09 |
| GCST004297_16 | Atrial fibrillation | 8.000000e-11 |
| GCST004300_3 | Incident atrial fibrillation | 3.000000e-08 |
| GCST005306_1 | Atrial fibrillation | 2.000000e-06 |
| GCST006061_29 | Atrial fibrillation | 6.000000e-27 |
| GCST006061_96 | Atrial fibrillation | 6.000000e-27 |
| GCST006231_39 | Mean arterial pressure | 6.000000e-06 |
| GCST006259_61 | Systolic blood pressure | 8.000000e-09 |
| GCST006414_1 | Atrial fibrillation | 9.000000e-35 |
| GCST007656_13 | Chronic obstructive pulmonary disease or resting heart rate (pleiotropy) | 2.000000e-10 |
| GCST009541_9 | Heart failure | 1.000000e-09 |
| GCST010321_125 | PR interval | 3.000000e-19 |
| GCST010796_1565 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-27 |
| GCST010796_1566 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9.000000e-12 |
| GCST010796_1567 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-14 |
| GCST010796_1568 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-17 |
| GCST010796_1569 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-19 |
| GCST010796_1570 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-20 |
| GCST010796_1571 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-20 |
| GCST010796_1572 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-22 |
| GCST010796_1573 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-22 |
| GCST010796_1574 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-23 |
| GCST010796_1575 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-25 |
| GCST011205_16 | Hypertrophic cardiomyopathy (MTAG) | 5.000000e-11 |
| GCST011211_11 | Hypertrophic cardiomyopathy | 3.000000e-11 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006340 | mean arterial pressure |
| EFO:0006335 | systolic blood pressure |
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, increases expression | 2 |
| Testosterone | increases expression, decreases expression, affects cotreatment | 2 |
| Valproic Acid | increases methylation, increases expression | 2 |
| aristolochic acid I | increases expression | 1 |
| arsenite | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| abrine | increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Doxorubicin | affects expression | 1 |
| Naled | affects expression | 1 |
| Progesterone | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Cadmium Chloride | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): heart failure