SYNPR-AS1

Summary

SYNPR-AS1 (SYNPR antisense RNA 1, HGNC:40774) is a long non-coding RNA gene on chromosome 3p14.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40774
Approved symbol	SYNPR-AS1
Name	SYNPR antisense RNA 1
Location	3p14.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	LncFASA
Ensembl gene	ENSG00000241359
Ensembl biotype	lncRNA
Entrez	100874016
RNAcentral	URS000013C88D — lncRNA, 558 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000488201, ENST00000803954, ENST00000803955, ENST00000803956

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000488201 — 5 exons

Exon	Start	End
ENSE00001818554	63427433	63427583
ENSE00001872400	63549978	63550051
ENSE00001907119	63423596	63423765
ENSE00001914944	63426713	63426806
ENSE00001935015	63444271	63444339

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 86.83.

Top tissues by expression

202 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.09	gold quality
ileal mucosa	UBERON:0000331	77.37	silver quality
tibialis anterior	UBERON:0001385	75.94	silver quality
pancreatic ductal cell	CL:0002079	71.87	silver quality
colonic epithelium	UBERON:0000397	69.32	silver quality
right uterine tube	UBERON:0001302	68.37	gold quality
rectum	UBERON:0001052	66.63	gold quality
bronchial epithelial cell	CL:0002328	65.29	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	64.58	gold quality
mucosa of transverse colon	UBERON:0004991	64.57	gold quality
bronchus	UBERON:0002185	64.16	silver quality
body of stomach	UBERON:0001161	62.90	gold quality
gall bladder	UBERON:0002110	62.81	gold quality
endocervix	UBERON:0000458	60.91	gold quality
smooth muscle tissue	UBERON:0001135	60.40	gold quality
stomach	UBERON:0000945	60.20	gold quality
islet of Langerhans	UBERON:0000006	56.43	gold quality
muscle of leg	UBERON:0001383	56.43	silver quality
body of pancreas	UBERON:0001150	56.40	gold quality
pancreas	UBERON:0001264	56.20	gold quality
epithelial cell of pancreas	CL:0000083	56.09	gold quality
vermiform appendix	UBERON:0001154	56.04	gold quality
transverse colon	UBERON:0001157	55.60	gold quality
fundus of stomach	UBERON:0001160	55.44	gold quality
right lung	UBERON:0002167	55.22	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
monocyte	CL:0000576	54.08	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.