SYP-AS1

Summary

SYP-AS1 (SYP antisense RNA 1, HGNC:40571) is a long non-coding RNA gene on chromosome Xp11.23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40571
Approved symbol	SYP-AS1
Name	SYP antisense RNA 1
Location	Xp11.23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237341
Ensembl biotype	lncRNA
Entrez	100873921
RNAcentral	URS000075CF9F — lncRNA, 669 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000433499, ENST00000809677

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433499 — 2 exons

Exon	Start	End
ENSE00004205707	49198833	49199224
ENSE00004205709	49202172	49202457

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 98.12.

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.12	gold quality
bone marrow	UBERON:0002371	87.98	silver quality
thymus	UBERON:0002370	86.98	gold quality
colonic epithelium	UBERON:0000397	71.95	silver quality
quadriceps femoris	UBERON:0001377	69.42	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
cortical plate	UBERON:0005343	66.33	gold quality
ventricular zone	UBERON:0003053	66.10	gold quality
prefrontal cortex	UBERON:0000451	64.38	gold quality
superior frontal gyrus	UBERON:0002661	62.43	gold quality
skeletal muscle tissue	UBERON:0001134	62.25	gold quality
right testis	UBERON:0004534	61.87	gold quality
left testis	UBERON:0004533	61.50	gold quality
testis	UBERON:0000473	61.04	gold quality
frontal cortex	UBERON:0001870	58.87	gold quality
lymph node	UBERON:0000029	57.94	gold quality
monocyte	CL:0000576	55.98	gold quality
cerebral cortex	UBERON:0000956	55.88	gold quality
muscle tissue	UBERON:0002385	55.54	gold quality
anterior cingulate cortex	UBERON:0009835	55.49	gold quality
cerebellum	UBERON:0002037	55.33	gold quality
adrenal tissue	UBERON:0018303	55.00	gold quality
duodenum	UBERON:0002114	54.96	gold quality
cerebellar cortex	UBERON:0002129	54.93	gold quality
primary visual cortex	UBERON:0002436	54.84	gold quality
cerebellar hemisphere	UBERON:0002245	54.77	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.65	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	53.10	gold quality
vermiform appendix	UBERON:0001154	52.74	gold quality
brain	UBERON:0000955	52.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.