SYT13-AS1

Summary

SYT13-AS1 (SYT13 antisense RNA 1, HGNC:58435) is a long non-coding RNA gene on chromosome 11p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58435
Approved symbol	SYT13-AS1
Name	SYT13 antisense RNA 1
Location	11p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254497
Ensembl biotype	lncRNA
Entrez	141732004

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000531663, ENST00000534342, ENST00000780295, ENST00000780296

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000531663 — 2 exons

Exon	Start	End
ENSE00004151442	45254185	45254645
ENSE00004151444	45253880	45253907

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 79.59.

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	79.59	gold quality
testis	UBERON:0000473	79.06	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.34	silver quality
right testis	UBERON:0004534	77.76	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.84	gold quality
cortical plate	UBERON:0005343	73.13	gold quality
colonic epithelium	UBERON:0000397	67.82	silver quality
islet of Langerhans	UBERON:0000006	60.80	gold quality
monocyte	CL:0000576	59.65	gold quality
duodenum	UBERON:0002114	59.19	gold quality
gall bladder	UBERON:0002110	57.63	gold quality
prefrontal cortex	UBERON:0000451	56.32	gold quality
liver	UBERON:0002107	55.74	gold quality
superior frontal gyrus	UBERON:0002661	55.50	gold quality
vermiform appendix	UBERON:0001154	54.07	gold quality
multicellular organism	UBERON:0000468	53.03	gold quality
gastrocnemius	UBERON:0001388	52.51	gold quality
rectum	UBERON:0001052	52.45	gold quality
myometrium	UBERON:0001296	52.42	gold quality
lung	UBERON:0002048	52.13	silver quality
blood	UBERON:0000178	51.44	gold quality
cortex of kidney	UBERON:0001225	51.36	gold quality
cerebellum	UBERON:0002037	50.70	gold quality
cerebellar cortex	UBERON:0002129	50.68	gold quality
cerebellar hemisphere	UBERON:0002245	50.50	gold quality
corpus callosum	UBERON:0002336	50.43	silver quality
right hemisphere of cerebellum	UBERON:0014890	49.21	gold quality
right lobe of liver	UBERON:0001114	48.84	silver quality
frontal cortex	UBERON:0001870	47.60	gold quality
fundus of stomach	UBERON:0001160	47.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.99

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.