SYT9-AS1

Summary

SYT9-AS1 (SYT9 antisense RNA 1, HGNC:56173) is a long non-coding RNA gene on chromosome 11p15.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56173
Approved symbol	SYT9-AS1
Name	SYT9 antisense RNA 1
Location	11p15.4
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251364
Ensembl biotype	lncRNA
Entrez	100506258
RNAcentral	URS000075A6FA — lncRNA, 4508 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000504206, ENST00000514126, ENST00000525534, ENST00000526695, ENST00000526706, ENST00000530169, ENST00000530201, ENST00000530846, ENST00000533684, ENST00000533693, ENST00000622955, ENST00000654089, ENST00000664943, ENST00000671315, ENST00000691856, ENST00000702494, ENST00000804696, ENST00000804697, ENST00000804698

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504206 — 4 exons

Exon	Start	End
ENSE00002045438	7457796	7457959
ENSE00002047848	7450373	7450442
ENSE00002081722	7461239	7461344
ENSE00002086015	7437627	7441719

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 83.26.

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.26	gold quality
sural nerve	UBERON:0015488	82.91	gold quality
colonic epithelium	UBERON:0000397	76.10	gold quality
left lobe of thyroid gland	UBERON:0001120	76.03	gold quality
right lobe of thyroid gland	UBERON:0001119	75.90	gold quality
monocyte	CL:0000576	75.14	gold quality
thyroid gland	UBERON:0002046	74.85	gold quality
bone marrow cell	CL:0002092	74.62	gold quality
leukocyte	CL:0000738	74.49	gold quality
minor salivary gland	UBERON:0001830	73.07	gold quality
spleen	UBERON:0002106	72.20	gold quality
body of pancreas	UBERON:0001150	72.10	gold quality
mucosa of transverse colon	UBERON:0004991	71.72	gold quality
descending thoracic aorta	UBERON:0002345	71.64	gold quality
right lobe of liver	UBERON:0001114	71.63	gold quality
skin of abdomen	UBERON:0001416	70.85	gold quality
saliva-secreting gland	UBERON:0001044	70.60	gold quality
right adrenal gland	UBERON:0001233	70.52	gold quality
right adrenal gland cortex	UBERON:0035827	70.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.24	gold quality
granulocyte	CL:0000094	70.07	gold quality
apex of heart	UBERON:0002098	69.83	gold quality
thoracic aorta	UBERON:0001515	69.79	gold quality
ascending aorta	UBERON:0001496	69.69	gold quality
skin of leg	UBERON:0001511	69.65	gold quality
calcaneal tendon	UBERON:0003701	69.44	gold quality
small intestine Peyer’s patch	UBERON:0003454	69.40	gold quality
lower esophagus mucosa	UBERON:0035834	69.35	gold quality
left adrenal gland	UBERON:0001234	69.34	gold quality
left adrenal gland cortex	UBERON:0035825	69.17	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.