TAF1A-AS1

Summary

TAF1A-AS1 (TAF1A antisense RNA 1, HGNC:40573) is a long non-coding RNA gene on chromosome 1q41.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40573
Approved symbol	TAF1A-AS1
Name	TAF1A antisense RNA 1
Location	1q41
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225265
Ensembl biotype	lncRNA
Entrez	100506161
RNAcentral	URS000075D6B5 — lncRNA, 661 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000413074, ENST00000427540, ENST00000441835, ENST00000661918, ENST00000664981, ENST00000668515, ENST00000832690, ENST00000832691

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413074 — 2 exons

Exon	Start	End
ENSE00001730918	222589962	222590407
ENSE00001801182	222592166	222593032

Expression profiles

Bgee: expression breadth ubiquitous, 167 present calls, max score 88.00.

FANTOM5 (CAGE): breadth broad, TPM avg 1.1831 / max 42.2922, expressed in 645 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
8709	1.1831	645

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.00	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.04	gold quality
bone marrow cell	CL:0002092	75.68	gold quality
colonic epithelium	UBERON:0000397	73.73	gold quality
left testis	UBERON:0004533	73.72	gold quality
right testis	UBERON:0004534	73.49	gold quality
testis	UBERON:0000473	72.98	gold quality
sperm	CL:0000019	72.60	silver quality
secondary oocyte	CL:0000655	71.40	gold quality
right adrenal gland cortex	UBERON:0035827	70.56	gold quality
ganglionic eminence	UBERON:0004023	70.50	gold quality
right adrenal gland	UBERON:0001233	70.26	gold quality
ventricular zone	UBERON:0003053	69.48	gold quality
islet of Langerhans	UBERON:0000006	69.36	gold quality
right lobe of liver	UBERON:0001114	69.23	gold quality
left adrenal gland	UBERON:0001234	68.73	gold quality
pancreatic ductal cell	CL:0002079	67.48	silver quality
left adrenal gland cortex	UBERON:0035825	67.47	gold quality
cortical plate	UBERON:0005343	67.08	gold quality
adrenal gland	UBERON:0002369	66.89	gold quality
adrenal cortex	UBERON:0001235	66.18	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	65.91	gold quality
hypothalamus	UBERON:0001898	65.35	gold quality
prefrontal cortex	UBERON:0000451	64.53	gold quality
oocyte	CL:0000023	64.18	silver quality
nucleus accumbens	UBERON:0001882	64.03	gold quality
stromal cell of endometrium	CL:0002255	63.96	gold quality
palpebral conjunctiva	UBERON:0001812	63.75	gold quality
anterior cingulate cortex	UBERON:0009835	63.65	gold quality
spinal cord	UBERON:0002240	63.61	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.18

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.