TAGAP-AS1

Summary

TAGAP-AS1 (TAGAP antisense RNA 1, HGNC:55239) is a long non-coding RNA gene on chromosome 6q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55239
Approved symbol	TAGAP-AS1
Name	TAGAP antisense RNA 1
Location	6q25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271913
Ensembl biotype	lncRNA
Entrez	105378083
RNAcentral	URS00026A1FE3 — lncRNA, 1607 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 50 — 50 lncRNA

ENST00000606466, ENST00000606470, ENST00000607391, ENST00000607796, ENST00000643132, ENST00000646912, ENST00000654871, ENST00000655636, ENST00000656128, ENST00000657923, ENST00000659171, ENST00000659621, ENST00000659798, ENST00000663014, ENST00000664321, ENST00000665423, ENST00000667452, ENST00000667828, ENST00000668318, ENST00000669184, ENST00000670185, ENST00000685651, ENST00000688282, ENST00000690645, ENST00000693265, ENST00000701459, ENST00000701500, ENST00000702264, ENST00000819073, ENST00000819074, ENST00000819075, ENST00000819076, ENST00000819077, ENST00000819078, ENST00000819079, ENST00000819080, ENST00000819081, ENST00000819082, ENST00000819083, ENST00000819084, ENST00000819085, ENST00000819086, ENST00000819087, ENST00000819088, ENST00000819089, ENST00000819090, ENST00000819091, ENST00000819092, ENST00000819093, ENST00000819094

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000606466 — 4 exons

Exon	Start	End
ENSE00003694923	159041798	159042493
ENSE00003697257	159025946	159026041
ENSE00003698343	159040731	159040790
ENSE00003700497	159040919	159041055

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 93.46.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 1.8334 / max 54.2742, expressed in 916 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
70903	1.0385	542
70904	0.7950	436

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	93.46	gold quality
bone marrow	UBERON:0002371	87.15	gold quality
granulocyte	CL:0000094	82.78	gold quality
right uterine tube	UBERON:0001302	82.46	gold quality
blood	UBERON:0000178	82.22	gold quality
pituitary gland	UBERON:0000007	81.20	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.06	silver quality
monocyte	CL:0000576	80.41	gold quality
leukocyte	CL:0000738	80.24	gold quality
adenohypophysis	UBERON:0002196	79.86	gold quality
superior frontal gyrus	UBERON:0002661	77.92	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.57	gold quality
hypothalamus	UBERON:0001898	77.14	gold quality
primary visual cortex	UBERON:0002436	77.01	gold quality
left ovary	UBERON:0002119	76.84	gold quality
corpus callosum	UBERON:0002336	76.58	gold quality
ovary	UBERON:0000992	76.53	gold quality
calcaneal tendon	UBERON:0003701	76.49	gold quality
endometrium	UBERON:0001295	76.46	gold quality
prefrontal cortex	UBERON:0000451	76.38	gold quality
right ovary	UBERON:0002118	76.06	gold quality
body of uterus	UBERON:0009853	75.89	gold quality
frontal cortex	UBERON:0001870	75.74	gold quality
cerebral cortex	UBERON:0000956	74.77	gold quality
right frontal lobe	UBERON:0002810	74.73	gold quality
Brodmann (1909) area 9	UBERON:0013540	74.72	gold quality
substantia nigra	UBERON:0002038	74.71	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	74.64	gold quality
popliteal artery	UBERON:0002250	74.49	gold quality
right hemisphere of cerebellum	UBERON:0014890	74.49	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.