TASL
geneOn this page
Also known as FLJ11577
Summary
TASL (TLR adaptor interacting with endolysosomal SLC15A4, HGNC:25667) is a protein-coding gene on chromosome Xp21.2, encoding TLR adapter interacting with SLC15A4 on the lysosome (Q9HAI6). Innate immune adapter that mediates the recruitment and activation of IRF5 downstream of endolysosomal toll-like receptors TLR7, TLR8 and TLR9.
Involved in positive regulation of toll-like receptor 7 signaling pathway; positive regulation of toll-like receptor 8 signaling pathway; and regulation of lysosomal lumen pH. Located in cytosol; endolysosome membrane; and nucleoplasm.
Source: NCBI Gene 80231 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 26 total — 2 pathogenic
- MANE Select transcript:
NM_025159
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25667 |
| Approved symbol | TASL |
| Name | TLR adaptor interacting with endolysosomal SLC15A4 |
| Location | Xp21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ11577 |
| Ensembl gene | ENSG00000120280 |
| Ensembl biotype | protein_coding |
| OMIM | 301049 |
| Entrez | 80231 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000378962, ENST00000955826, ENST00000955827
RefSeq mRNA: 1 — MANE Select: NM_025159
NM_025159
CCDS: CCDS14224
Canonical transcript exons
ENST00000378962 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001091645 | 30576752 | 30576866 |
| ENSE00001479394 | 30558809 | 30560356 |
| ENSE00001479395 | 30577638 | 30577766 |
Expression profiles
Bgee: expression breadth ubiquitous, 261 present calls, max score 98.13.
FANTOM5 (CAGE): breadth broad, TPM avg 5.0448 / max 656.6692, expressed in 426 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 198773 | 2.8788 | 307 |
| 198774 | 0.9967 | 244 |
| 198775 | 0.5922 | 246 |
| 198777 | 0.2684 | 136 |
| 198776 | 0.2596 | 134 |
| 198772 | 0.0491 | 31 |
Top tissues by expression
278 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 98.13 | gold quality |
| monocyte | CL:0000576 | 92.31 | gold quality |
| mononuclear cell | CL:0000842 | 92.08 | gold quality |
| cerebellar vermis | UBERON:0004720 | 91.90 | gold quality |
| leukocyte | CL:0000738 | 91.79 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 90.05 | gold quality |
| pylorus | UBERON:0001166 | 88.05 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 88.03 | gold quality |
| type B pancreatic cell | CL:0000169 | 87.98 | silver quality |
| olfactory bulb | UBERON:0002264 | 87.56 | silver quality |
| cardia of stomach | UBERON:0001162 | 87.52 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 87.46 | gold quality |
| male germ cell | CL:0000015 | 87.29 | silver quality |
| sperm | CL:0000019 | 87.11 | silver quality |
| bone marrow | UBERON:0002371 | 86.45 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 86.42 | gold quality |
| vena cava | UBERON:0004087 | 86.38 | gold quality |
| blood | UBERON:0000178 | 86.18 | gold quality |
| ventral tegmental area | UBERON:0002691 | 86.07 | gold quality |
| superficial temporal artery | UBERON:0001614 | 85.95 | gold quality |
| thymus | UBERON:0002370 | 85.93 | gold quality |
| superior surface of tongue | UBERON:0007371 | 85.88 | gold quality |
| nipple | UBERON:0002030 | 85.72 | gold quality |
| granulocyte | CL:0000094 | 85.54 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 85.44 | silver quality |
| subthalamic nucleus | UBERON:0001906 | 85.02 | gold quality |
| trachea | UBERON:0003126 | 84.67 | gold quality |
| pericardium | UBERON:0002407 | 84.47 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 84.38 | silver quality |
| tongue | UBERON:0001723 | 84.24 | silver quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.71 |
| E-MTAB-5061 | no | 3.72 |
| E-CURD-112 | no | 3.71 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
24 targeting TASL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-205-5P | 99.81 | 70.05 | 1557 |
| HSA-MIR-4694-3P | 99.79 | 69.53 | 2640 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
| HSA-MIR-4645-3P | 99.76 | 69.33 | 993 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-378A-5P | 99.65 | 66.33 | 1311 |
| HSA-MIR-6516-3P | 99.65 | 68.57 | 1238 |
| HSA-MIR-6513-3P | 99.59 | 69.77 | 1102 |
| HSA-MIR-203A-3P | 99.49 | 70.56 | 2806 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-516A-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-516B-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-7162-5P | 99.46 | 68.08 | 1368 |
| HSA-MIR-504-3P | 99.30 | 67.18 | 1745 |
| HSA-MIR-2054 | 99.20 | 68.89 | 1699 |
| HSA-MIR-7151-3P | 99.04 | 69.72 | 2370 |
| HSA-MIR-6506-5P | 99.04 | 65.66 | 1386 |
| HSA-MIR-619-5P | 98.57 | 64.97 | 1988 |
| HSA-MIR-3977 | 98.00 | 68.17 | 1500 |
| HSA-MIR-617 | 96.79 | 65.96 | 738 |
Literature-anchored findings (GeneRIF, showing 4)
- Through combined genetic, in silico, in vitro, and ex vivo approaches, study defines CXorf21, a gene of hitherto unknown function, which escapes X-chromosome inactivation, as a candidate underlying the Xp21.2 systemic lupus erythematosus association and demonstrates that CXorf21 is an IFN-response gene and that the sexual dimorphism in expression is magnified by immunological challenge. (PMID:31092820)
- Characterization of cxorf21 Provides Molecular Insight Into Female-Bias Immune Response in SLE Pathogenesis. (PMID:31695690)
- identification of TASL as the component that links endolysosomal TLRs to the IRF5 transcription factor via SLC15A4 provides a mechanistic explanation for the involvement of these proteins in systemic lupus erythematosus (PMID:32433612)
- TASL mediates keratinocyte differentiation by regulating intracellular calcium levels and lysosomal function. (PMID:38744928)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Tasl | ENSMUSG00000025058 |
| rattus_norvegicus | Tasl | ENSRNOG00000003748 |
Protein
Protein identifiers
TLR adapter interacting with SLC15A4 on the lysosome — Q9HAI6 (reviewed: Q9HAI6)
All UniProt accessions (1): Q9HAI6
UniProt curated annotations — full annotation on UniProt →
Function. Innate immune adapter that mediates the recruitment and activation of IRF5 downstream of endolysosomal toll-like receptors TLR7, TLR8 and TLR9. Following recruitment to endolysosome by SLC15A4 downstream of TLR7, TLR8 and TLR9, specifically recruits IRF5 transcription factor via its pLxIS motif, leading to IRF5 activation and subsequent expression of type I interferons. Plays a role in the regulation of endolysosomal pH in immune cells such as B-cells, dendritic cells and monocytes.
Subunit / interactions. Interacts (via pLxIS motif) with IRF5; leading to IRF5 activation. Interacts (via N-terminus) with SLC15A4; leading to its recruitment to endolysosome.
Subcellular location. Lysosome membrane. Endosome membrane. Nucleus. Cytoplasm.
Tissue specificity. Highly expressed in immune cell types such as B-cells, neutrophils, dendritic cells and monocytes, the expression levels are two-three-fold higher in female cells compared to male cells (at protein level). Expressed at low levels in T-cells and NK cells.
Post-translational modifications. The phosphorylated pLxIS motif constitutes an IRF5-binding motif, leading to recruitment of the transcription factor IRF5 to induce type-I interferons and other cytokines.
Disease relevance. Some alleles may be associated with systemic lupus erythematosus (SLE); a chronic, relapsing, inflammatory, and often febrile multisystemic disorder of connective tissue, characterized principally by involvement of the skin, joints, kidneys and serosal membranes. It is of unknown etiology, but is thought to represent a failure of the regulatory mechanisms of the autoimmune system. Because it evades X-chromosome inactivation, its expression is increased in female immune cells which may be involved to SLE striking sex imbalance towards females.
Domain organisation. The pLxIS motif constitutes an IRF5-binding motif: following phosphorylation, the phosphorylated pLxIS motif of TASL recruits IRF5.
Induction. Escape from X chromosome inactivation results in an increased expression in females. In monocytes and B cells, induced by type I and type II interferons as well as LPS.
Similarity. Belongs to the TASL protein family.
RefSeq proteins (1): NP_079435* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR027869 | TASL | Family |
Pfam: PF15133
UniProt features (7 total): mutagenesis site 2, helix 2, chain 1, short sequence motif 1, modified residue 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8JZU | ELECTRON MICROSCOPY | 3.05 |
| 8WX5 | ELECTRON MICROSCOPY | 3.91 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9HAI6-F1 | 58.54 | 0.11 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 294
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 294 | abolished ability to activate irf5. |
| 294 | phosphomimetic mutant; retains ability to activate irf5. |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-9860276 | SLC15A4:TASL-dependent IRF5 activation |
| R-HSA-168138 | Toll Like Receptor 9 (TLR9) Cascade |
| R-HSA-168181 | Toll Like Receptor 7/8 (TLR7/8) Cascade |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-168898 | Toll-like Receptor Cascades |
MSigDB gene sets: 158 (showing top):
REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_VACUOLE_ORGANIZATION, GOCC_VACUOLAR_MEMBRANE, IVANOVA_HEMATOPOIESIS_LATE_PROGENITOR, MODULE_308, NFKB_Q6, GOBP_REGULATION_OF_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY, GOBP_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_ERYTHROCYTE_UP, NFKB_C, IRF7_01, GOBP_REGULATION_OF_IMMUNE_RESPONSE, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, MODULE_301
GO Biological Process (7): regulation of toll-like receptor signaling pathway (GO:0034121), positive regulation of toll-like receptor 7 signaling pathway (GO:0034157), positive regulation of toll-like receptor 8 signaling pathway (GO:0034161), obsolete regulation of lysosomal lumen pH (GO:0035751), innate immune response (GO:0045087), positive regulation of innate immune response (GO:0045089), immune system process (GO:0002376)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (10): nucleoplasm (GO:0005654), cytosol (GO:0005829), endolysosome membrane (GO:0036020), nucleus (GO:0005634), cytoplasm (GO:0005737), lysosome (GO:0005764), lysosomal membrane (GO:0005765), endosome (GO:0005768), endosome membrane (GO:0010008), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Toll-like Receptor Cascades | 2 |
| Toll Like Receptor 9 (TLR9) Cascade | 1 |
| Toll Like Receptor 7/8 (TLR7/8) Cascade | 1 |
| Immune System | 1 |
| Innate Immune System | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| positive regulation of pattern recognition receptor signaling pathway | 2 |
| positive regulation of intracellular signal transduction | 2 |
| toll-like receptor signaling pathway | 1 |
| regulation of pattern recognition receptor signaling pathway | 1 |
| toll-like receptor 7 signaling pathway | 1 |
| regulation of toll-like receptor 7 signaling pathway | 1 |
| toll-like receptor 8 signaling pathway | 1 |
| regulation of toll-like receptor 8 signaling pathway | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| positive regulation of response to biotic stimulus | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| innate immune response | 1 |
| regulation of innate immune response | 1 |
| positive regulation of immune response | 1 |
| biological_process | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| lysosomal membrane | 1 |
| endosome membrane | 1 |
| endolysosome | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| lytic vacuole | 1 |
| lysosome | 1 |
| lytic vacuole membrane | 1 |
| endomembrane system | 1 |
| cytoplasmic vesicle | 1 |
| endosome | 1 |
| cytoplasmic vesicle membrane | 1 |
| bounding membrane of organelle | 1 |
Protein interactions and networks
STRING
428 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TASL | SLC15A4 | Q8N697 | 711 |
| TASL | TLR7 | Q9NYK1 | 603 |
| TASL | TMEM187 | Q14656 | 524 |
| TASL | GTPBP6 | O43824 | 419 |
| TASL | COXFA4L3 | Q9C002 | 407 |
| TASL | IRF5 | Q13568 | 356 |
| TASL | MAGEB1 | P43366 | 348 |
| TASL | NR0B1 | P51843 | 322 |
| TASL | C1orf162 | Q8NEQ5 | 305 |
| TASL | MAGEB3 | O15480 | 302 |
| TASL | RUBCNL | Q9H714 | 298 |
| TASL | IRAK1 | P51617 | 292 |
| TASL | WDFY4 | Q6ZS81 | 290 |
| TASL | TAF9B | Q9HBM6 | 280 |
| TASL | IL1RAPL1 | Q9NZN1 | 263 |
IntAct
20 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TASL | SLC15A4 | psi-mi:“MI:0915”(physical association) | 0.810 |
| SLC15A4 | TASL | psi-mi:“MI:0915”(physical association) | 0.810 |
| SLC15A4 | TASL | psi-mi:“MI:0403”(colocalization) | 0.810 |
| SLC15A4 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC15A4 | IRF5 | psi-mi:“MI:0914”(association) | 0.460 |
| TASL | CYLD | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Slc15a4 | TASL | psi-mi:“MI:0915”(physical association) | 0.400 |
| TASL | CFTR | psi-mi:“MI:0915”(physical association) | 0.370 |
| CFTR | TASL | psi-mi:“MI:0915”(physical association) | 0.370 |
| SLC15A4 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TASL | HSPA2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (13): SLC15A4 (Affinity Capture-MS), SLC15A4 (Affinity Capture-MS), SLC15A4 (Affinity Capture-MS), HSPA2 (Affinity Capture-MS), ACTC1 (Affinity Capture-MS), SLC25A31 (Affinity Capture-MS), ACTB (Affinity Capture-MS), CXorf21 (Reconstituted Complex), CXorf21 (PCA), CXorf21 (Affinity Capture-Western), Slc15a4 (Affinity Capture-Western), CXorf21 (Affinity Capture-MS), CXorf21 (Affinity Capture-RNA)
ESM2 similar proteins: A1YF19, A2T767, B0K035, B2GUZ2, E9PV87, F7BHS0, O95997, P0DPK0, P23999, P97613, Q08B36, Q08BD8, Q09HN1, Q25QX6, Q2KHM9, Q2QD14, Q2QD15, Q2T9X8, Q2WG80, Q32LD7, Q3SZY3, Q3UHI0, Q3V1H1, Q5R7F8, Q5RBY6, Q5RKG1, Q5ZJU5, Q6A000, Q6AYH4, Q6DF94, Q8BHZ5, Q8C804, Q8IYA6, Q8N0Z3, Q8QGU6, Q94CK6, Q96C57, Q96FF9, Q96M53, Q9BDP6
Diamond homologs: Q32LD7, Q9D3J9, Q9HAI6
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
26 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3245900 | NC_000023.10:g.(?30322696)(33038337_?)del | Pathogenic |
| 980269 | GRCh37/hg19 Xp21.3-21.1(chrX:28309706-31853992)x1 | Pathogenic |
SpliceAI
223 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| X:30576746:TACTA:T | donor_loss | 1.0000 |
| X:30576747:ACTAC:A | donor_loss | 1.0000 |
| X:30576748:CTACC:C | donor_loss | 1.0000 |
| X:30576749:TAC:T | donor_loss | 1.0000 |
| X:30576751:C:A | donor_gain | 1.0000 |
| X:30576751:C:CT | donor_loss | 1.0000 |
| X:30576862:CTGAC:C | acceptor_gain | 1.0000 |
| X:30576866:CC:C | acceptor_loss | 1.0000 |
| X:30576866:CCTA:C | acceptor_gain | 1.0000 |
| X:30576869:A:AC | acceptor_gain | 1.0000 |
| X:30576869:A:C | acceptor_gain | 1.0000 |
| X:30560353:CATT:C | acceptor_gain | 0.9900 |
| X:30560355:TT:T | acceptor_gain | 0.9900 |
| X:30560357:C:CC | acceptor_gain | 0.9900 |
| X:30561885:T:A | donor_gain | 0.9900 |
| X:30576863:TGAC:T | acceptor_gain | 0.9900 |
| X:30576867:C:CC | acceptor_gain | 0.9900 |
| X:30560355:TTC:T | acceptor_loss | 0.9800 |
| X:30560356:TC:T | acceptor_loss | 0.9800 |
| X:30576778:A:AC | donor_gain | 0.9800 |
| X:30576779:T:C | donor_gain | 0.9800 |
| X:30576864:GAC:G | acceptor_gain | 0.9800 |
| X:30576864:GACC:G | acceptor_gain | 0.9800 |
| X:30577633:CTTAC:C | donor_loss | 0.9800 |
| X:30577634:TTA:T | donor_loss | 0.9800 |
| X:30577635:TACC:T | donor_loss | 0.9800 |
| X:30577636:A:AT | donor_loss | 0.9800 |
| X:30577637:C:T | donor_loss | 0.9800 |
| X:30560352:GCATT:G | acceptor_gain | 0.9700 |
| X:30560353:CATTC:C | acceptor_gain | 0.9700 |
AlphaMissense
1994 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| X:30559976:A:G | L127S | 0.992 |
| X:30559715:A:G | L214P | 0.984 |
| X:30559597:A:C | S253R | 0.971 |
| X:30559597:A:T | S253R | 0.971 |
| X:30559599:T:G | S253R | 0.971 |
| X:30559727:A:G | L210P | 0.968 |
| X:30559979:T:G | D126A | 0.963 |
| X:30559692:A:C | Y222D | 0.961 |
| X:30559694:A:G | L221S | 0.960 |
| X:30559703:A:T | V218D | 0.960 |
| X:30559724:T:A | N211I | 0.960 |
| X:30559970:A:C | I129S | 0.960 |
| X:30559723:A:C | N211K | 0.959 |
| X:30559723:A:T | N211K | 0.959 |
| X:30559979:T:A | D126V | 0.959 |
| X:30560018:A:T | V113D | 0.954 |
| X:30559979:T:C | D126G | 0.952 |
| X:30559978:G:C | D126E | 0.948 |
| X:30559978:G:T | D126E | 0.948 |
| X:30559478:A:G | I293T | 0.943 |
| X:30559712:T:A | E215V | 0.941 |
| X:30559718:T:G | Y213S | 0.941 |
| X:30559727:A:T | L210Q | 0.939 |
| X:30559484:A:T | L291H | 0.937 |
| X:30559484:A:G | L291P | 0.936 |
| X:30559970:A:T | I129N | 0.935 |
| X:30559705:C:A | K217N | 0.928 |
| X:30559705:C:G | K217N | 0.928 |
| X:30559715:A:C | L214R | 0.928 |
| X:30559719:A:C | Y213D | 0.928 |
dbSNP variants (sampled 300 via entrez): RS1000193956 (X:30575779 T>G), RS1000196401 (X:30569382 A>G), RS1000207756 (X:30570253 CACACACAT>C), RS1000543521 (X:30572968 G>A), RS1000894437 (X:30559136 T>A), RS1001152602 (X:30578183 A>T), RS1001433652 (X:30558346 C>T), RS1001775537 (X:30562226 A>C), RS1001983673 (X:30578389 C>A,T), RS1002053767 (X:30576675 A>G), RS1002163805 (X:30575099 T>C), RS1002292364 (X:30560265 T>C), RS1002553253 (X:30577772 G>C), RS1002764417 (X:30572164 A>G), RS1003226561 (X:30571765 T>C)
Disease associations
OMIM: gene MIM:301049 | disease phenotypes: MIM:310200
GenCC curated gene-disease
Mondo (1): Duchenne muscular dystrophy (MONDO:0010679)
Orphanet (1): Duchenne muscular dystrophy (Orphanet:98896)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003155_26 | Systemic lupus erythematosus | 5.000000e-10 |
| GCST003156_12 | Systemic lupus erythematosus | 7.000000e-08 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020388 | Muscular Dystrophy, Duchenne | C05.651.534.500.300; C10.668.491.175.500.300; C16.320.322.562; C16.320.577.300 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
13 total (human), top 13 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases methylation, increases expression, increases mutagenesis | 3 |
| 3-((6-(2-methoxyphenyl)pyrimidin-4-yl)amino)phenyl)methane sulfonamide | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| sulforaphane | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| Formaldehyde | increases expression | 1 |
| Iron | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Nickel | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Antirheumatic Agents | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00606775 | PHASE4 | UNKNOWN | The Preventive Efficacy of Carvedilol on Cardiac Dysfunction in Duchenne Muscular Dystrophy |
| NCT00819845 | PHASE4 | UNKNOWN | Ramipril Versus Carvedilol in Duchenne and Becker Patients |
| NCT01422200 | PHASE4 | COMPLETED | Flu Vaccine Study in Neuromuscular Patients 2011 |
| NCT01999075 | PHASE4 | COMPLETED | Stacking Exercises Aid the Decline in FVC and Sick Time |
| NCT04687020 | PHASE4 | ACTIVE_NOT_RECRUITING | Long-term Use of Viltolarsen in Boys With Duchenne Muscular Dystrophy in Clinical Practice (VILT-502) |
| NCT04708314 | PHASE4 | TERMINATED | An Open-Label Study of Golodirsen in Non-Ambulant Patients With Duchenne Muscular Dystrophy |
| NCT05412394 | PHASE4 | RECRUITING | Once Weekly Infant Corticosteroid Trial for DMD |
| NCT06713135 | PHASE4 | ACTIVE_NOT_RECRUITING | A Study on Safety and Effectiveness of Long-term Treatment With Vamorolone in Boys With Duchenne Muscular Dystrophy |
| NCT07542314 | PHASE4 | NOT_YET_RECRUITING | Study to Evaluate the Safety and Effectiveness of ELEVIDYS in Participants With Duchenne Muscular Dystrophy Treated in a Post-Marketing Setting |
| NCT00004646 | PHASE3 | COMPLETED | Phase III Randomized, Double-Blind Study of Prednisone for Duchenne Muscular Dystrophy |
| NCT00110669 | PHASE3 | COMPLETED | High-dose Prednisone in Duchenne Muscular Dystrophy |
| NCT00308113 | PHASE3 | TERMINATED | CoQ10 and Prednisone in Non-Ambulatory DMD |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT01247207 | PHASE3 | COMPLETED | Study of Ataluren in Previously Treated Participants With Nonsense Mutation Dystrophinopathy (nmDBMD) |
| NCT01557400 | PHASE3 | COMPLETED | Study of Ataluren for Previously Treated Participants With Nonsense Mutation Duchenne/Becker Muscular Dystrophy (nmDBMD) in Europe, Israel, Australia, and Canada |
| NCT01603407 | PHASE3 | COMPLETED | Finding the Optimum Regimen for Duchenne Muscular Dystrophy |
| NCT01648634 | PHASE3 | COMPLETED | Nebivolol for the Prevention of Left Ventricular Systolic Dysfunction in Patients With Duchenne Muscular Dystrophy |
| NCT02255552 | PHASE3 | COMPLETED | Study of Eteplirsen in DMD Patients |
| NCT02354352 | PHASE3 | COMPLETED | Therapeutic Potential for Aldosterone Inhibition in Duchenne Muscular Dystrophy |
| NCT02500381 | PHASE3 | COMPLETED | Study of SRP-4045 (Casimersen) and SRP-4053 (Golodirsen) in Participants With Duchenne Muscular Dystrophy (DMD) |
| NCT02814019 | PHASE3 | TERMINATED | A Phase III Double-blind Study With Idebenone in Patients With Duchenne Muscular Dystrophy (DMD) Taking Glucocorticoid Steroids |
| NCT02851797 | PHASE3 | COMPLETED | Clinical Study to Evaluate the Efficacy and Safety of Givinostat in Ambulant Patients With Duchenne Muscular Dystrophy |
| NCT03354039 | PHASE3 | COMPLETED | Tamoxifen in Duchenne Muscular Dystrophy |
| NCT03532542 | PHASE3 | TERMINATED | An Extension Study to Evaluate Casimersen or Golodirsen in Patients With Duchenne Muscular Dystrophy |
| NCT03603288 | PHASE3 | TERMINATED | Phase III Study With Idebenone in Patients With Duchenne Muscular Dystrophy (SIDEROS-E) |
| NCT03642145 | PHASE3 | WITHDRAWN | A Study of Deflazacort (Emflaza®) in Participants With Duchenne Muscular Dystrophy (DMD) |
| NCT03917719 | PHASE3 | TERMINATED | An Open-Label Extension Study of Edasalonexent in Boys With Duchenne Muscular Dystrophy |
| NCT04060199 | PHASE3 | COMPLETED | Study to Assess the Efficacy and Safety of Viltolarsen in Ambulant Boys With DMD (RACER53) |
| NCT04281485 | PHASE3 | ACTIVE_NOT_RECRUITING | Study to Evaluate the Safety and Efficacy of PF-06939926 for the Treatment of Duchenne Muscular Dystrophy |
| NCT04371666 | PHASE3 | TERMINATED | Phase 3 Trial of Pamrevlumab or Placebo With Systemic Corticosteroids in Participants With Non-ambulatory Duchenne Muscular Dystrophy (DMD) |
| NCT04587908 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3 Study of TAS-205 in Patients With Duchenne Muscular Dystrophy(REACH-DMD) |
| NCT04632940 | PHASE3 | TERMINATED | Phase 3 Trial of Pamrevlumab or Placebo in Combination With Systemic Corticosteroids in Participants With Ambulatory DMD |
| NCT04768062 | PHASE3 | UNKNOWN | Study to Assess the Safety and Efficacy of Viltolarsen in Ambulant Boys With DMD (RACER53-X) |
| NCT05096221 | PHASE3 | COMPLETED | A Gene Transfer Therapy Study to Evaluate the Safety and Efficacy of Delandistrogene Moxeparvovec (SRP-9001) in Participants With Duchenne Muscular Dystrophy (DMD) |
| NCT05689164 | PHASE3 | TERMINATED | A Study to Understand the Long-term Safety and Effects of an Experimental Gene Therapy for Duchenne Muscular Dystrophy. |
| NCT05881408 | PHASE3 | ACTIVE_NOT_RECRUITING | A Gene Transfer Therapy Study to Evaluate the Safety and Efficacy of Delandistrogene Moxeparvovec (SRP-9001) in Non-Ambulatory and Ambulatory Participants With Duchenne Muscular Dystrophy (DMD) |
| NCT05933057 | PHASE3 | RECRUITING | Efficacy, Safety and Tolerability of Givinostat in Non-ambulant Patients With Duchenne Muscular Dystrophy |
| NCT05967351 | PHASE3 | ENROLLING_BY_INVITATION | A Long-term Follow-up Study of Participants Who Received Delandistrogene Moxeparvovec (SRP-9001) in a Previous Clinical Study |
| NCT07160634 | PHASE3 | RECRUITING | A Study of SGT-003 Gene Therapy in Ambulant Males With Duchenne Muscular Dystrophy (IMPACT DUCHENNE) |
| NCT07587242 | PHASE3 | NOT_YET_RECRUITING | A Phase 3 Study to Evaluate the Safety and Efficacy of AOC 1044 (Also Referred to as Delpacibart Zotadirsen) in Participants With DMD With Gene Mutations Amenable to Exon 44 Skipping |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Duchenne muscular dystrophy