TBC1D31
geneOn this page
Also known as MGC21654Gm85
Summary
TBC1D31 (TBC1 domain family member 31, HGNC:30888) is a protein-coding gene on chromosome 8q24.13, encoding TBC1 domain family member 31 (Q96DN5). Molecular adapter which is involved in cilium biogenesis.
Enables molecular adaptor activity. Involved in cilium assembly. Located in Golgi apparatus; centriolar satellite; and ciliary basal body.
Source: NCBI Gene 93594 — RefSeq curated summary.
At a glance
- Gene–disease (curated): congenital anomaly of kidney and urinary tract (Limited, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 206 total — 1 likely-pathogenic
- MANE Select transcript:
NM_145647
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30888 |
| Approved symbol | TBC1D31 |
| Name | TBC1 domain family member 31 |
| Location | 8q24.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC21654, Gm85 |
| Ensembl gene | ENSG00000156787 |
| Ensembl biotype | protein_coding |
| Entrez | 93594 |
Gene structure
Transcript identifiers
Ensembl transcripts: 20 — 15 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay
ENST00000287380, ENST00000327098, ENST00000518099, ENST00000518577, ENST00000518684, ENST00000518805, ENST00000518866, ENST00000519418, ENST00000520368, ENST00000521676, ENST00000521914, ENST00000521980, ENST00000522276, ENST00000522420, ENST00000524307, ENST00000865421, ENST00000865422, ENST00000865423, ENST00000865424, ENST00000948273
RefSeq mRNA: 12 — MANE Select: NM_145647
NM_001145088, NM_001330606, NM_001363148, NM_001363149, NM_001363150, NM_001363151, NM_001363152, NM_001363153, NM_001363154, NM_001363155, NM_001363156, NM_145647
CCDS: CCDS47916, CCDS6338, CCDS83320
Canonical transcript exons
ENST00000287380 — 22 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002108796 | 123151806 | 123152153 |
| ENSE00002732245 | 123072707 | 123072846 |
| ENSE00003459989 | 123140761 | 123140901 |
| ENSE00003488166 | 123077111 | 123077257 |
| ENSE00003494667 | 123100807 | 123101007 |
| ENSE00003495373 | 123142262 | 123142456 |
| ENSE00003503304 | 123130198 | 123130333 |
| ENSE00003508854 | 123126056 | 123126189 |
| ENSE00003514756 | 123105288 | 123105464 |
| ENSE00003525781 | 123097282 | 123097441 |
| ENSE00003542676 | 123120055 | 123120188 |
| ENSE00003551006 | 123084162 | 123084340 |
| ENSE00003583685 | 123109317 | 123109396 |
| ENSE00003594513 | 123129066 | 123129218 |
| ENSE00003604237 | 123126508 | 123126687 |
| ENSE00003611368 | 123144717 | 123144855 |
| ENSE00003622887 | 123093591 | 123093742 |
| ENSE00003665187 | 123150036 | 123150128 |
| ENSE00003680144 | 123082702 | 123082817 |
| ENSE00003685499 | 123128281 | 123128513 |
| ENSE00003693931 | 123134114 | 123134206 |
| ENSE00003786120 | 123109474 | 123109620 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 96.41.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.1041 / max 117.0453, expressed in 1646 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 90470 | 7.4805 | 1632 |
| 90469 | 0.5906 | 332 |
| 90468 | 0.0330 | 16 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| secondary oocyte | CL:0000655 | 96.41 | gold quality |
| oocyte | CL:0000023 | 91.56 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.17 | gold quality |
| ventricular zone | UBERON:0003053 | 86.74 | gold quality |
| granulocyte | CL:0000094 | 84.10 | gold quality |
| cortical plate | UBERON:0005343 | 82.92 | gold quality |
| ganglionic eminence | UBERON:0004023 | 82.48 | gold quality |
| monocyte | CL:0000576 | 81.65 | gold quality |
| leukocyte | CL:0000738 | 81.43 | gold quality |
| mononuclear cell | CL:0000842 | 81.36 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 81.01 | gold quality |
| buccal mucosa cell | CL:0002336 | 80.87 | gold quality |
| cerebellar cortex | UBERON:0002129 | 80.71 | gold quality |
| stromal cell of endometrium | CL:0002255 | 80.60 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 80.60 | gold quality |
| amniotic fluid | UBERON:0000173 | 80.59 | gold quality |
| adrenal tissue | UBERON:0018303 | 79.00 | gold quality |
| cerebellum | UBERON:0002037 | 78.70 | gold quality |
| calcaneal tendon | UBERON:0003701 | 78.52 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.51 | gold quality |
| colonic epithelium | UBERON:0000397 | 78.41 | gold quality |
| right uterine tube | UBERON:0001302 | 78.34 | gold quality |
| blood | UBERON:0000178 | 77.50 | gold quality |
| nucleus accumbens | UBERON:0001882 | 77.35 | gold quality |
| caudate nucleus | UBERON:0001873 | 77.25 | gold quality |
| bone marrow cell | CL:0002092 | 76.35 | gold quality |
| embryo | UBERON:0000922 | 76.30 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 75.79 | gold quality |
| right frontal lobe | UBERON:0002810 | 75.64 | gold quality |
| lymph node | UBERON:0000029 | 75.58 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9543 | yes | 20.99 |
| E-CURD-112 | yes | 7.24 |
| E-ANND-3 | yes | 5.57 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): TP53
miRNA regulators (miRDB)
19 targeting TBC1D31, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-181B-2-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-181B-3P | 99.81 | 70.06 | 1646 |
| HSA-MIR-2115-3P | 99.31 | 69.68 | 2026 |
| HSA-MIR-548L | 99.06 | 70.90 | 2560 |
| HSA-MIR-5701 | 98.97 | 69.54 | 1502 |
| HSA-MIR-361-5P | 98.95 | 70.16 | 1340 |
| HSA-MIR-340-3P | 98.11 | 68.25 | 679 |
| HSA-MIR-6827-3P | 98.08 | 72.27 | 651 |
| HSA-MIR-4446-3P | 97.91 | 64.29 | 991 |
Literature-anchored findings (GeneRIF, showing 2)
- A novel homozygous missense variant in TBC1D31 in a consanguineous family with congenital anomalies of the kidney and urinary tract (CAKUT). (PMID:37468454)
- Genomic Amplification of TBC1D31 Promotes Hepatocellular Carcinoma Through Reducing the Rab22A-Mediated Endolysosomal Trafficking and Degradation of EGFR. (PMID:39206796)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tbc1d31 | ENSDARG00000074623 |
| mus_musculus | Tbc1d31 | ENSMUSG00000022364 |
| rattus_norvegicus | Tbc1d31 | ENSRNOG00000006103 |
| drosophila_melanogaster | CG16896 | FBGN0035073 |
| caenorhabditis_elegans | WBGENE00017435 |
Paralogs (1): WDR3 (ENSG00000065183)
Protein
Protein identifiers
TBC1 domain family member 31 — Q96DN5 (reviewed: Q96DN5)
Alternative names: WD repeat-containing protein 67
All UniProt accessions (11): Q96DN5, E5RFG6, E5RG45, E5RHC6, E5RI27, E5RI94, E7ERK7, E7EWW7, F5GYF1, H0YCP2, H0YCY3
UniProt curated annotations — full annotation on UniProt →
Function. Molecular adapter which is involved in cilium biogenesis. Part of a functional complex including OFD1 a centriolar protein involved in cilium assembly. Could regulate the cAMP-dependent phosphorylation of OFD1, and its subsequent ubiquitination by PJA2 which ultimately leads to its proteasomal degradation.
Subunit / interactions. Interacts with PJA2; the interaction is direct and recruits PJA2 to centrosomes. Interacts with OFD1; regulates its activity in cilium assembly. Interacts with PRKACA.
Subcellular location. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Centriolar satellite. Cilium basal body.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96DN5-1 | 1 | yes |
| Q96DN5-2 | 2 | |
| Q96DN5-3 | 3 |
RefSeq proteins (12): NP_001138560, NP_001317535, NP_001350077, NP_001350078, NP_001350079, NP_001350080, NP_001350081, NP_001350082, NP_001350083, NP_001350084, NP_001350085, NP_663622* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000195 | Rab-GAP-TBC_dom | Domain |
| IPR001680 | WD40_rpt | Repeat |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR035969 | Rab-GAP_TBC_sf | Homologous_superfamily |
| IPR036322 | WD40_repeat_dom_sf | Homologous_superfamily |
| IPR051570 | TBC1_cilium_biogenesis | Family |
Pfam: PF00400, PF00566
UniProt features (23 total): repeat 7, sequence variant 3, region of interest 2, coiled-coil region 2, compositionally biased region 2, splice variant 2, sequence conflict 2, chain 1, mutagenesis site 1, domain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96DN5-F1 | 76.36 | 0.23 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 1053–1056 | loss of interaction with pja2. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 157 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, BROWNE_HCMV_INFECTION_6HR_DN, GOCC_MICROTUBULE_ORGANIZING_CENTER, PUJANA_CHEK2_PCC_NETWORK, MORF_ZNF10, GOBP_CILIUM_ORGANIZATION, GOCC_CENTROSOME, GOBP_ORGANELLE_ASSEMBLY, MORF_EPHA7, MORF_RAB3A, MORF_BMPR2, FISCHER_DREAM_TARGETS, GOBP_CELL_PROJECTION_ORGANIZATION, LIU_VMYB_TARGETS_UP, WANG_PROSTATE_CANCER_ANDROGEN_INDEPENDENT
GO Biological Process (2): cilium assembly (GO:0060271), cell projection organization (GO:0030030)
GO Molecular Function (2): molecular adaptor activity (GO:0060090), protein binding (GO:0005515)
GO Cellular Component (7): Golgi apparatus (GO:0005794), centrosome (GO:0005813), centriolar satellite (GO:0034451), ciliary basal body (GO:0036064), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| binding | 2 |
| microtubule organizing center | 2 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| cellular component organization | 1 |
| molecular_function | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| centriole | 1 |
| centrosome | 1 |
| cilium | 1 |
| intracellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
1262 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TBC1D31 | DHX35 | Q9H5Z1 | 625 |
| TBC1D31 | CCDC138 | Q96M89 | 602 |
| TBC1D31 | CCDC61 | Q9Y6R9 | 553 |
| TBC1D31 | RAB5IF | Q9BUV8 | 508 |
| TBC1D31 | PIBF1 | Q8WXW3 | 504 |
| TBC1D31 | NOL10 | Q9BSC4 | 492 |
| TBC1D31 | DERL1 | Q9BUN8 | 491 |
| TBC1D31 | CEP20 | Q96NB1 | 488 |
| TBC1D31 | WDFY2 | Q96P53 | 488 |
| TBC1D31 | ATAD2 | Q6PL18 | 469 |
| TBC1D31 | ZHX3 | Q9H4I2 | 456 |
| TBC1D31 | GGT7 | Q9UJ14 | 456 |
| TBC1D31 | RPN2 | P04844 | 450 |
| TBC1D31 | ZNF704 | Q6ZNC4 | 447 |
| TBC1D31 | CSTPP1 | Q9H6J7 | 445 |
IntAct
34 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:2364”(proximity) | 0.900 |
| CEP290 | CCP110 | psi-mi:“MI:2364”(proximity) | 0.890 |
| LTBR | ZNF724 | psi-mi:“MI:0914”(association) | 0.530 |
| DYNC2I2 | TCP1 | psi-mi:“MI:0914”(association) | 0.530 |
| KIAA0753 | OFD1 | psi-mi:“MI:2364”(proximity) | 0.480 |
| Cep135 | psi-mi:“MI:0914”(association) | 0.350 | |
| Cep131 | WBP2 | psi-mi:“MI:0914”(association) | 0.350 |
| OFD1 | CCDC14 | psi-mi:“MI:0914”(association) | 0.350 |
| Lrrcc1 | CCDC14 | psi-mi:“MI:0914”(association) | 0.350 |
| CEP162 | IPO5 | psi-mi:“MI:0914”(association) | 0.350 |
| TANK | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| RYBP | FAM186A | psi-mi:“MI:0914”(association) | 0.350 |
| CEP63 | CIBAR1 | psi-mi:“MI:0914”(association) | 0.350 |
| FTL | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| RNF7 | SOCS2 | psi-mi:“MI:0914”(association) | 0.350 |
| PCM1 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| KIAA0753 | DVL1 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP128 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| ODF2 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP162 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP135 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CNTRL | CCDC85C | psi-mi:“MI:2364”(proximity) | 0.270 |
| LCA5 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SPICE1 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP120 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP63 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| CEP89 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SSX2IP | CNOT1 | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (78): TBC1D31 (Affinity Capture-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Affinity Capture-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS), TBC1D31 (Proximity Label-MS)
ESM2 similar proteins: A0JM23, A4IGD2, A5PKL6, A6NHR9, A6QQZ0, D3ZAT9, F1QWA8, O35099, O88741, O94952, P0CI65, P58005, Q29RL0, Q2TBQ7, Q3U213, Q3UMF9, Q4R6P7, Q4R6Y8, Q5E9N5, Q5F204, Q5HYI7, Q5I0G3, Q5IH14, Q5R5S1, Q5R9R1, Q5RL51, Q5TGI0, Q60649, Q6AZT7, Q6DDI6, Q6DDT5, Q6DEY8, Q6NXY1, Q6YXW6, Q7TNH6, Q7Z494, Q8NBP0, Q8NEC7, Q8TB36, Q94E75
Diamond homologs: H2LP95, Q29RL0, Q5RD21, Q6DDI6, Q6DEY8, Q6NXY1, Q96DN5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 44 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Loss of Nlp from mitotic centrosomes | 8 | 45.3× | 2e-10 |
| Loss of proteins required for interphase microtubule organization from the centrosome | 8 | 45.3× | 2e-10 |
| AURKA Activation by TPX2 | 8 | 43.5× | 2e-10 |
| Anchoring of the basal body to the plasma membrane | 10 | 40.4× | 3e-12 |
| Recruitment of mitotic centrosome proteins and complexes | 8 | 38.8× | 4e-10 |
| Regulation of PLK1 Activity at G2/M Transition | 8 | 36.2× | 6e-10 |
| Recruitment of NuMA to mitotic centrosomes | 8 | 33.3× | 1e-09 |
| Cilium Assembly | 5 | 19.4× | 8e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cilium assembly | 11 | 20.2× | 1e-09 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
206 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 153 |
| Likely benign | 18 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2671821 | NM_145647.4(TBC1D31):c.187C>G (p.Gln63Glu) | Likely pathogenic |
SpliceAI
4834 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:123077106:GACA:G | acceptor_loss | 1.0000 |
| 8:123077107:ACAG:A | acceptor_loss | 1.0000 |
| 8:123077108:CAG:C | acceptor_loss | 1.0000 |
| 8:123077109:A:AG | acceptor_gain | 1.0000 |
| 8:123077109:A:C | acceptor_loss | 1.0000 |
| 8:123077110:G:GA | acceptor_gain | 1.0000 |
| 8:123077110:G:GT | acceptor_loss | 1.0000 |
| 8:123077110:GA:G | acceptor_gain | 1.0000 |
| 8:123077110:GAATT:G | acceptor_gain | 1.0000 |
| 8:123077254:ACAGG:A | donor_loss | 1.0000 |
| 8:123077255:CAGGT:C | donor_loss | 1.0000 |
| 8:123077256:AGGTA:A | donor_loss | 1.0000 |
| 8:123077258:GT:G | donor_loss | 1.0000 |
| 8:123077259:T:G | donor_loss | 1.0000 |
| 8:123084160:A:AG | acceptor_gain | 1.0000 |
| 8:123084161:G:GG | acceptor_gain | 1.0000 |
| 8:123097271:T:A | acceptor_gain | 1.0000 |
| 8:123097276:A:AG | acceptor_gain | 1.0000 |
| 8:123097277:T:G | acceptor_gain | 1.0000 |
| 8:123097279:T:G | acceptor_gain | 1.0000 |
| 8:123097280:A:AG | acceptor_gain | 1.0000 |
| 8:123097280:A:C | acceptor_loss | 1.0000 |
| 8:123097281:G:GA | acceptor_gain | 1.0000 |
| 8:123097281:GA:G | acceptor_gain | 1.0000 |
| 8:123097281:GAGA:G | acceptor_gain | 1.0000 |
| 8:123097281:GAGAT:G | acceptor_gain | 1.0000 |
| 8:123097437:ATCAG:A | donor_loss | 1.0000 |
| 8:123097439:CAGG:C | donor_loss | 1.0000 |
| 8:123097440:AGGTT:A | donor_loss | 1.0000 |
| 8:123097441:GG:G | donor_loss | 1.0000 |
AlphaMissense
7098 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:123084275:T:A | W152R | 1.000 |
| 8:123084275:T:C | W152R | 1.000 |
| 8:123093624:A:C | S185R | 0.999 |
| 8:123093626:C:A | S185R | 0.999 |
| 8:123093626:C:G | S185R | 0.999 |
| 8:123093654:T:A | W195R | 0.999 |
| 8:123093654:T:C | W195R | 0.999 |
| 8:123109484:T:A | W434R | 0.999 |
| 8:123109484:T:C | W434R | 0.999 |
| 8:123084243:C:A | A141D | 0.998 |
| 8:123084249:C:A | T143K | 0.998 |
| 8:123084277:G:C | W152C | 0.998 |
| 8:123084277:G:T | W152C | 0.998 |
| 8:123093656:G:C | W195C | 0.998 |
| 8:123093656:G:T | W195C | 0.998 |
| 8:123126565:T:A | W588R | 0.998 |
| 8:123126565:T:C | W588R | 0.998 |
| 8:123082782:C:A | A102E | 0.997 |
| 8:123084249:C:G | T143R | 0.997 |
| 8:123084276:G:C | W152S | 0.997 |
| 8:123084309:T:C | L163P | 0.996 |
| 8:123097331:T:A | W241R | 0.996 |
| 8:123097331:T:C | W241R | 0.996 |
| 8:123120168:A:T | E517V | 0.996 |
| 8:123084267:C:A | A149E | 0.995 |
| 8:123093622:T:C | L184P | 0.995 |
| 8:123093655:G:C | W195S | 0.995 |
| 8:123109380:T:G | Y425D | 0.995 |
| 8:123109396:G:C | R430T | 0.995 |
| 8:123126580:G:C | D593H | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000044187 (8:123102826 T>C), RS1000060093 (8:123126236 T>A,C), RS1000093734 (8:123109708 T>C), RS1000116599 (8:123103933 C>G), RS1000154921 (8:123156848 G>A), RS1000155803 (8:123110023 G>A), RS1000189035 (8:123148872 A>G), RS1000189438 (8:123155184 T>TTGA), RS1000222498 (8:123084462 CAAGCA>C), RS1000241813 (8:123161039 G>A), RS1000294610 (8:123084241 T>C,G), RS1000321967 (8:123109865 G>A), RS1000322948 (8:123080358 A>G), RS1000332792 (8:123135772 A>C,G), RS1000347381 (8:123155449 C>A,T)
Disease associations
OMIM: gene `` | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| congenital anomaly of kidney and urinary tract | Limited | Autosomal recessive |
Mondo (1): congenital anomaly of kidney and urinary tract (MONDO:0019719)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003098_17 | Diabetic kidney disease | 6.000000e-08 |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C566906 | Cakut (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
40 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression | 4 |
| Benzo(a)pyrene | decreases expression, decreases methylation, increases expression | 3 |
| bisphenol A | decreases expression, increases expression | 2 |
| Cisplatin | affects cotreatment, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| bisphenol F | increases methylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| trichostatin A | increases expression | 1 |
| methylparaben | decreases expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Ethanol | decreases expression, increases abundance, affects cotreatment | 1 |
| Dichlorodiphenyl Dichloroethylene | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Nickel | increases expression | 1 |
| Perfume | increases expression | 1 |
Clinical trials (associated diseases)
4 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04115345 | PHASE1 | COMPLETED | A Study of a Renal Autologous Cell Therapy (REACT) in Patients With Chronic Kidney Disease (CKD) From Congenital Anomalies of the Kidney and Urinary Tract (CAKUT). |
| NCT05694169 | PHASE1 | TERMINATED | A Study of Participants With Chronic Kidney Disease Previously Treated With REACT |
| NCT04537364 | Not specified | COMPLETED | Prediction of Renal Parenchymal Damage of CAKUT |
| NCT06921733 | Not specified | RECRUITING | Ultrasound Localization Microscopy in Patient With Congenital Anomalies of the Kidney and Urinary Tract (CAKUT) |
Related Atlas pages
- Associated diseases: congenital anomaly of kidney and urinary tract
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital anomaly of kidney and urinary tract, diabetic kidney disease