TBKBP1
gene geneOn this page
Also known as ProSAPiP2KIAA0775
Summary
TBKBP1 (TBK1 binding protein 1, HGNC:30140) is a protein-coding gene on chromosome 17q21.32, encoding TANK-binding kinase 1-binding protein 1 (A7MCY6). Adapter protein which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity.
TBKBP1 is an adaptor protein that binds to TBK1 (MIM 604834) and is part of the interaction network in the TNF (MIM 191160)/NFKB (see MIM 164011) pathway (Bouwmeester et al., 2004 [PubMed 14743216]).
Source: NCBI Gene 9755 — RefSeq curated summary.
At a glance
- GWAS associations: 13
- Clinical variants (ClinVar): 131 total
- Druggable target: yes
- MANE Select transcript:
NM_001394755
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30140 |
| Approved symbol | TBKBP1 |
| Name | TBK1 binding protein 1 |
| Location | 17q21.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ProSAPiP2, KIAA0775 |
| Ensembl gene | ENSG00000198933 |
| Ensembl biotype | protein_coding |
| OMIM | 608476 |
| Entrez | 9755 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 13 protein_coding
ENST00000361722, ENST00000537587, ENST00000578982, ENST00000851180, ENST00000851181, ENST00000851182, ENST00000851183, ENST00000851184, ENST00000851185, ENST00000938873, ENST00000938874, ENST00000938875, ENST00000938876
RefSeq mRNA: 3 — MANE Select: NM_001394755
NM_001394755, NM_001394756, NM_014726
CCDS: CCDS45722
Canonical transcript exons
ENST00000578982 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000924999 | 47696711 | 47696833 |
| ENSE00000925000 | 47697089 | 47697193 |
| ENSE00000925001 | 47698595 | 47698775 |
| ENSE00000925002 | 47699320 | 47699495 |
| ENSE00000925003 | 47699636 | 47699697 |
| ENSE00000925004 | 47708394 | 47708512 |
| ENSE00001137906 | 47708725 | 47709452 |
| ENSE00002695017 | 47696079 | 47696337 |
| ENSE00002728589 | 47694161 | 47694194 |
| ENSE00003934568 | 47710498 | 47712052 |
Expression profiles
Bgee: expression breadth ubiquitous, 190 present calls, max score 91.06.
FANTOM5 (CAGE): breadth broad, TPM avg 1.2935 / max 31.1376, expressed in 678 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 161370 | 1.2935 | 678 |
Top tissues by expression
258 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cingulate cortex | UBERON:0003027 | 91.06 | gold quality |
| right frontal lobe | UBERON:0002810 | 91.01 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 90.97 | gold quality |
| apex of heart | UBERON:0002098 | 89.89 | gold quality |
| diaphragm | UBERON:0001103 | 89.80 | gold quality |
| amygdala | UBERON:0001876 | 88.67 | gold quality |
| gastrocnemius | UBERON:0001388 | 88.50 | gold quality |
| cortical plate | UBERON:0005343 | 87.66 | gold quality |
| muscle of leg | UBERON:0001383 | 87.61 | gold quality |
| granulocyte | CL:0000094 | 87.58 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 87.29 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.24 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 87.22 | gold quality |
| prefrontal cortex | UBERON:0000451 | 86.94 | gold quality |
| neocortex | UBERON:0001950 | 86.78 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 86.60 | gold quality |
| right ovary | UBERON:0002118 | 86.51 | gold quality |
| cerebellar cortex | UBERON:0002129 | 86.51 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 86.41 | gold quality |
| frontal cortex | UBERON:0001870 | 86.40 | gold quality |
| left ovary | UBERON:0002119 | 86.01 | gold quality |
| cerebral cortex | UBERON:0000956 | 85.68 | gold quality |
| muscle organ | UBERON:0001630 | 85.63 | gold quality |
| cerebellum | UBERON:0002037 | 85.56 | gold quality |
| hypothalamus | UBERON:0001898 | 85.39 | gold quality |
| Ammon’s horn | UBERON:0001954 | 85.29 | gold quality |
| olfactory bulb | UBERON:0002264 | 85.11 | gold quality |
| right atrium auricular region | UBERON:0006631 | 84.89 | gold quality |
| heart left ventricle | UBERON:0002084 | 84.78 | gold quality |
| cardiac ventricle | UBERON:0002082 | 84.48 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.21 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
114 targeting TBKBP1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6748-5P | 100.00 | 65.81 | 1057 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-10401-5P | 99.99 | 65.79 | 948 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
| HSA-LET-7C-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7E-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7F-5P | 99.98 | 72.56 | 1784 |
| HSA-LET-7G-5P | 99.98 | 72.37 | 1784 |
| HSA-LET-7I-5P | 99.98 | 72.37 | 1788 |
| HSA-MIR-98-5P | 99.98 | 72.33 | 1787 |
| HSA-LET-7D-5P | 99.96 | 71.76 | 1632 |
| HSA-MIR-4458 | 99.96 | 71.64 | 1650 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-10523-5P | 99.91 | 69.22 | 2038 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-202-3P | 99.84 | 71.41 | 1290 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
Literature-anchored findings (GeneRIF, showing 8)
- results suggest that efficient signal transduction upon viral infection requires SINTBAD, TANK and NAP1 because they link TBK1 and IKKi to virus-activated signalling cascades (PMID:17568778)
- Studies show that three proteins expressed in HEK-293T cells (NAP1, TANK and TBKBP1) interact with TBK1. (PMID:23286385)
- TBKBP1 is associated with the severity of ankylosing spondylitis in the Chinese Han population (PMID:23637848)
- The two selected single nucleotide polymorphisms (SNPs) in TBKBP1 show no relationship with the clinical outcomes. None of the 12 SNPs is related to mSASSS. (PMID:25494292)
- we show that, essential for anti-bacterial autophagy, the cargo receptor NDP52 forms a trimeric complex with FIP200 and SINTBAD/NAP1, which are subunits of the autophagy-initiating ULK and the TBK1 kinase complex, respectively. FIP200 and SINTBAD/NAP1 are each recruited independently to bacteria via NDP52, as revealed by selective point mutations in their respective binding sites (PMID:30853402)
- Analysis of 47 Non-MHC Ankylosing Spondylitis Susceptibility Loci Regarding Associated Variants across Whites and Han Chinese. (PMID:31523044)
- The TBK1-TBKBP1 axis facilitates tumour-mediated immunosuppression. (PMID:31792381)
- A multi-step genomic approach prioritized TBKBP1 gene as relevant for multiple sclerosis susceptibility. (PMID:35545683)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tbkbp1 | ENSDARG00000061473 |
| mus_musculus | Tbkbp1 | ENSMUSG00000038517 |
| rattus_norvegicus | Tbkbp1 | ENSRNOG00000009370 |
Paralogs (1): AZI2 (ENSG00000163512)
Protein
Protein identifiers
TANK-binding kinase 1-binding protein 1 — A7MCY6 (reviewed: A7MCY6)
All UniProt accessions (3): A7MCY6, F5H1U4, J3KS71
UniProt curated annotations — full annotation on UniProt →
Function. Adapter protein which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity.
Subunit / interactions. Homodimer. May form a heterodimer with NAP1. Interacts with TKB1 and IKBKE. Weakly interacts with DDX3X. (Microbial infection) Interacts with vaccinia virus protein C6.
Tissue specificity. Detected in leukocytes, lung, placenta, small intestine, liver, kidney, spleen, muscle, heart, brain and at low levels in thymus.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| A7MCY6-1 | 1 | yes |
| A7MCY6-2 | 2 |
RefSeq proteins (3): NP_001381684, NP_001381685, NP_055541 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR024581 | TBD | Domain |
| IPR041641 | CALCOCO1/2_Zn_UBZ1 | Domain |
| IPR051891 | TBK1-IKBKE_adapters | Family |
Pfam: PF12845
UniProt features (25 total): modified residue 9, binding site 4, region of interest 3, compositionally biased region 3, splice variant 2, coiled-coil region 2, chain 1, zinc finger region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-A7MCY6-F1 | 64.49 | 0.31 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 586; 589; 605; 609
Post-translational modifications (9): 184, 365, 372, 379, 385, 400, 415, 504, 534
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 111 (showing top):
GOBP_RESPONSE_TO_PEPTIDE, ATACCTC_MIR202, GOBP_RESPONSE_TO_TYPE_I_INTERFERON, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, BASSO_HAIRY_CELL_LEUKEMIA_UP, GOBP_DEFENSE_RESPONSE_TO_VIRUS, KEGG_RIG_I_LIKE_RECEPTOR_SIGNALING_PATHWAY, CAGCCTC_MIR4855P, GOBP_RESPONSE_TO_VIRUS, GOCC_TRANSFERASE_COMPLEX_TRANSFERRING_PHOSPHORUS_CONTAINING_GROUPS, GOCC_TRANSFERASE_COMPLEX, GOCC_PROTEIN_KINASE_COMPLEX, MIKKELSEN_ES_ICP_WITH_H3K4ME3, MIKKELSEN_NPC_ICP_WITH_H3K4ME3, BHAT_ESR1_TARGETS_NOT_VIA_AKT1_UP
GO Biological Process (4): defense response to virus (GO:0051607), type I interferon-mediated signaling pathway (GO:0060337), immune system process (GO:0002376), innate immune response (GO:0045087)
GO Molecular Function (3): zinc ion binding (GO:0008270), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (2): cytoplasm (GO:0005737), serine/threonine protein kinase complex (GO:1902554)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response | 1 |
| response to virus | 1 |
| cellular response to type I interferon | 1 |
| interferon-mediated signaling pathway | 1 |
| biological_process | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| transition metal ion binding | 1 |
| binding | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| protein kinase complex | 1 |
Protein interactions and networks
STRING
490 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TBKBP1 | TBK1 | Q9UHD2 | 994 |
| TBKBP1 | TANK | Q92844 | 985 |
| TBKBP1 | CALCOCO2 | Q13137 | 944 |
| TBKBP1 | IKBKE | Q14164 | 936 |
| TBKBP1 | TRAF3 | Q13114 | 770 |
| TBKBP1 | RB1CC1 | Q8TDY2 | 738 |
| TBKBP1 | MAVS | Q7Z434 | 637 |
| TBKBP1 | TAX1BP1 | Q86VP1 | 595 |
| TBKBP1 | AZI2 | Q9H6S1 | 595 |
| TBKBP1 | CHUK | O15111 | 580 |
| TBKBP1 | IKBKB | O14920 | 576 |
| TBKBP1 | NFKB1 | P19838 | 572 |
| TBKBP1 | TRADD | Q15628 | 534 |
| TBKBP1 | IRF3 | Q14653 | 507 |
| TBKBP1 | BIRC2 | Q13490 | 480 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TBK1 | TBKBP1 | psi-mi:“MI:0914”(association) | 0.860 |
| TBKBP1 | TBK1 | psi-mi:“MI:0915”(physical association) | 0.860 |
| TBK1 | TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.860 |
| TBKBP1 | IKBKE | psi-mi:“MI:0914”(association) | 0.720 |
| IKBKE | TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| TBKBP1 | IKBKE | psi-mi:“MI:0915”(physical association) | 0.720 |
| CALCOCO2 | TBKBP1 | psi-mi:“MI:0914”(association) | 0.640 |
| rep | TBKBP1 | psi-mi:“MI:0914”(association) | 0.530 |
| PICK1 | ILVBL | psi-mi:“MI:0914”(association) | 0.530 |
| PIP | TBKBP1 | psi-mi:“MI:0914”(association) | 0.530 |
| TBKBP1 | OPG029 | psi-mi:“MI:0915”(physical association) | 0.520 |
| OPG029 | TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.520 |
| TBKBP1 | APBA3 | psi-mi:“MI:0915”(physical association) | 0.500 |
| RB1CC1 | TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.500 |
| TBKBP1 | AGO2 | psi-mi:“MI:0915”(physical association) | 0.500 |
| TBKBP1 | TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TBKBP1 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 | |
| EGLN3 | FAM168B | psi-mi:“MI:0914”(association) | 0.350 |
| rep | TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 |
| CSNK2A2 | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
| MIF | BLTP3B | psi-mi:“MI:0914”(association) | 0.350 |
| POLR1D | BDP1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (113): TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-Western), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-RNA), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-Western), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-MS), TBKBP1 (Affinity Capture-Western), TBKBP1 (Affinity Capture-Western), TBKBP1 (Proximity Label-MS), TBKBP1 (Proximity Label-MS), TBKBP1 (Proximity Label-MS)
ESM2 similar proteins: A0A0U1RQ45, A0A1B0GWB2, A2A9T0, A6QPA0, A7MCY6, D3ZFB6, E9PUL5, E9Q0B3, F5GYI3, F5H4A9, J3QNX5, O70142, P0C1G7, P81408, P97764, P98077, Q148V8, Q15654, Q2KI80, Q3SX26, Q3SZL6, Q4V9L6, Q5FVJ4, Q5FW56, Q5RAC1, Q5T7N3, Q6DG50, Q6PAJ3, Q6PJ61, Q6ZMQ8, Q6ZNR0, Q6ZRV2, Q75VX8, Q7Z6L0, Q86UK7, Q86VE0, Q8BGW2, Q8BRJ3, Q8BX43, Q8C0R7
Diamond homologs: A2A9T0, A7MCY6, Q3SYW5, Q4KMA0, Q4R3X1, Q5RD40, Q6DG50, Q9H6S1, Q9QYP6
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TBKBP1 | “up-regulates activity” | TBK1 | relocalization |
| TBKBP1 | “up-regulates activity” | CARD10 | relocalization |
Disease & clinical
Clinical variants and AI predictions
ClinVar
131 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 108 |
| Likely benign | 6 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1541 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:47696337:GGTCA:G | donor_loss | 1.0000 |
| 17:47696338:G:GA | donor_loss | 1.0000 |
| 17:47696709:A:AG | acceptor_gain | 1.0000 |
| 17:47696710:G:GA | acceptor_gain | 1.0000 |
| 17:47696710:GTAC:G | acceptor_gain | 1.0000 |
| 17:47696710:GTACC:G | acceptor_gain | 1.0000 |
| 17:47696831:GAG:G | donor_gain | 1.0000 |
| 17:47696832:AGGT:A | donor_loss | 1.0000 |
| 17:47696834:G:GA | donor_loss | 1.0000 |
| 17:47696835:T:A | donor_loss | 1.0000 |
| 17:47697075:T:A | acceptor_gain | 1.0000 |
| 17:47697084:T:G | acceptor_gain | 1.0000 |
| 17:47697182:C:G | donor_gain | 1.0000 |
| 17:47697187:G:GT | donor_gain | 1.0000 |
| 17:47697190:GATG:G | donor_gain | 1.0000 |
| 17:47697224:G:GT | donor_gain | 1.0000 |
| 17:47698592:CA:C | acceptor_loss | 1.0000 |
| 17:47698593:A:AG | acceptor_gain | 1.0000 |
| 17:47698593:AGAG:A | acceptor_gain | 1.0000 |
| 17:47698593:AGAGG:A | acceptor_gain | 1.0000 |
| 17:47698594:G:GG | acceptor_gain | 1.0000 |
| 17:47698594:GA:G | acceptor_gain | 1.0000 |
| 17:47698594:GAGG:G | acceptor_gain | 1.0000 |
| 17:47698594:GAGGG:G | acceptor_gain | 1.0000 |
| 17:47698670:G:GT | donor_gain | 1.0000 |
| 17:47698764:GCT:G | donor_gain | 1.0000 |
| 17:47699319:GCA:G | acceptor_gain | 1.0000 |
| 17:47699496:GT:G | donor_loss | 1.0000 |
| 17:47699497:T:G | donor_loss | 1.0000 |
| 17:47699630:CCTTA:C | acceptor_loss | 1.0000 |
AlphaMissense
1273 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:47696243:T:C | L44P | 0.999 |
| 17:47696254:T:G | Y48D | 0.999 |
| 17:47696243:T:A | L44H | 0.998 |
| 17:47696252:C:A | A47D | 0.998 |
| 17:47696268:G:C | K52N | 0.998 |
| 17:47696268:G:T | K52N | 0.998 |
| 17:47696276:T:C | L55P | 0.998 |
| 17:47696318:T:C | L69P | 0.998 |
| 17:47696251:G:C | A47P | 0.997 |
| 17:47696264:T:A | I51N | 0.997 |
| 17:47696273:G:C | R54P | 0.997 |
| 17:47696254:T:C | Y48H | 0.996 |
| 17:47696264:T:G | I51S | 0.996 |
| 17:47696306:T:C | L65P | 0.996 |
| 17:47696240:C:A | A43D | 0.995 |
| 17:47696254:T:A | Y48N | 0.995 |
| 17:47696285:T:C | L58P | 0.995 |
| 17:47697183:T:C | L148P | 0.995 |
| 17:47696264:T:C | I51T | 0.993 |
| 17:47697137:G:C | A133P | 0.993 |
| 17:47697150:T:C | L137P | 0.993 |
| 17:47696237:T:C | F42S | 0.992 |
| 17:47696236:T:C | F42L | 0.991 |
| 17:47696238:T:A | F42L | 0.991 |
| 17:47696238:T:G | F42L | 0.991 |
| 17:47696243:T:G | L44R | 0.990 |
| 17:47696246:T:A | I45N | 0.990 |
| 17:47696296:A:G | N62D | 0.990 |
| 17:47696255:A:C | Y48S | 0.989 |
| 17:47696276:T:A | L55Q | 0.989 |
dbSNP variants (sampled 300 via entrez): RS1000015091 (17:47694896 G>A,C,T), RS1000310516 (17:47700268 A>C,G,T), RS1000311683 (17:47711634 C>T), RS1000536049 (17:47705898 G>A), RS1000690374 (17:47712542 G>A), RS1000785705 (17:47711215 C>T), RS1000889667 (17:47711932 C>G,T), RS1000907053 (17:47694588 C>A,T), RS1000939098 (17:47694440 G>A), RS1001040628 (17:47706140 G>C), RS1001121773 (17:47699695 T>C), RS1001365473 (17:47694298 C>T), RS1001418444 (17:47693692 C>T), RS1001513276 (17:47706098 T>G), RS1001890903 (17:47712099 C>A,G,T)
Disease associations
OMIM: gene MIM:608476 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
13 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001149_8 | Ankylosing spondylitis | 5.000000e-08 |
| GCST001341_8 | Multiple sclerosis | 1.000000e-07 |
| GCST002690_12 | Very long-chain saturated fatty acid levels (fatty acid 20:0) | 4.000000e-07 |
| GCST004557_34 | Body mass index | 2.000000e-08 |
| GCST004558_1 | Body mass index (joint analysis main effects and physical activity interaction) | 3.000000e-09 |
| GCST004560_22 | Body mass index in physically inactive individuals | 3.000000e-06 |
| GCST005529_24 | Ankylosing spondylitis | 2.000000e-12 |
| GCST005529_42 | Ankylosing spondylitis | 6.000000e-15 |
| GCST005951_16 | Body mass index | 4.000000e-08 |
| GCST007995_4 | Asthma (childhood onset) | 3.000000e-09 |
| GCST008916_117 | Asthma | 1.000000e-09 |
| GCST90002390_115 | Mean corpuscular hemoglobin | 1.000000e-11 |
| GCST90006909_3 | Human herpes virus 7 U14 antibody levels | 7.000000e-09 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006796 | very long-chain saturated fatty acid measurement |
| EFO:0004340 | body mass index |
| EFO:0008002 | physical activity measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0011038 | anti-human herpes virus 7 antibody measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4523108 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 5 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.32 | Kd | 47.61 | nM | CHEMBL5653589 |
| 7.22 | ED50 | 59.99 | nM | CHEMBL5653589 |
| 5.68 | Kd | 2090 | nM | CHEMBL4462318 |
| 5.04 | Kd | 9065 | nM | CHEMBL3752910 |
PubChem BioAssay actives
3 with measured affinity, of 5 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149556: Binding affinity to human TBKBP1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0476 | uM |
| 2,6-difluoro-N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]benzenesulfonamide | 1573324: Binding affinity to TBKBP1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assay | kd | 2.0900 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149556: Binding affinity to human TBKBP1 incubated for 45 mins by Kinobead based pull down assay | kd | 9.0650 | uM |
CTD chemical–gene interactions
29 total (human), top 29 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects binding, increases expression | 2 |
| Tobacco Smoke Pollution | increases expression, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| TL8-506 | affects cotreatment, increases expression | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | increases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| diallyl trisulfide | increases expression | 1 |
| tamibarotene | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| monomethylarsonous acid | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Cisplatin | decreases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Lead | affects expression | 1 |
| Methotrexate | decreases expression | 1 |
| Smoke | decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
| Particulate Matter | increases abundance, increases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4371454 | Binding | Binding affinity to TBKBP1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assay | Discovery of N-[4-(Quinolin-4-yloxy)phenyl]benzenesulfonamides as Novel AXL Kinase Inhibitors. — J Med Chem |
Cellosaurus cell lines
14 cell lines: 14 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2I8 | Abcam HeLa TBKBP1 KO | Cancer cell line | Female |
| CVCL_C8QB | HeLa S3 penta KO-AZI2/TBKBP1 DKO clone 20 | Cancer cell line | Female |
| CVCL_C9DV | HeLa S3 AZI2/TBKBP1 DKO clone 13 | Cancer cell line | Female |
| CVCL_C9DW | HeLa S3 penta KO-ULK1/ULK2 DKO-AZI2/TBKBP1 DKO | Cancer cell line | Female |
| CVCL_D2Q0 | HeLa S3 AZI2/TBKBP1 DKO clone 14 | Cancer cell line | Female |
| CVCL_D2Q1 | HeLa S3 penta KO-AZI2/TBKBP1 DKO clone 26 | Cancer cell line | Female |
| CVCL_D2Y9 | HeLa S3 TBKBP1 KO clone 7 | Cancer cell line | Female |
| CVCL_E2LK | HAP1 TBKBP1 (-) 3 | Cancer cell line | Male |
| CVCL_E2LL | HAP1 TBKBP1 (-) 4 | Cancer cell line | Male |
| CVCL_E2LM | HAP1 TBKBP1 (-) 5 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.