TCIRG1
gene geneOn this page
Also known as TIRC7OC-116OC116ATP6N1CAtp6ia3ATP6V0A3
Summary
TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3, HGNC:11647) is a protein-coding gene on chromosome 11q13.2, encoding V-type proton ATPase 116 kDa subunit a 3 (Q13488). Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons.
This gene encodes a subunit of a large protein complex known as a vacuolar H+-ATPase (V-ATPase). The protein complex acts as a pump to move protons across the membrane. This movement of protons helps regulate the pH of cells and their surrounding environment. V-ATPase dependent organelle acidification is necessary for such intracellular processes as protein sorting, zymogen activation, and receptor-mediated endocytosis. V-ATPase is comprised of a cytosolic V1 domain and a transmembrane V0 domain. Alternative splicing results in multiple transcript variants. Mutations in this gene are associated with infantile malignant osteopetrosis.
Source: NCBI Gene 10312 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive osteopetrosis 1 (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 1,777 total — 103 pathogenic, 115 likely-pathogenic
- Phenotypes (HPO): 127
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_006019
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11647 |
| Approved symbol | TCIRG1 |
| Name | T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 |
| Location | 11q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TIRC7, OC-116, OC116, ATP6N1C, Atp6i, a3, ATP6V0A3 |
| Ensembl gene | ENSG00000110719 |
| Ensembl biotype | protein_coding |
| OMIM | 604592 |
| Entrez | 10312 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 9 retained_intron, 8 protein_coding, 3 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000265686, ENST00000524598, ENST00000524870, ENST00000525516, ENST00000525724, ENST00000527530, ENST00000528981, ENST00000529364, ENST00000529657, ENST00000530063, ENST00000530449, ENST00000530802, ENST00000532635, ENST00000533005, ENST00000533947, ENST00000534673, ENST00000698254, ENST00000698255, ENST00000698256, ENST00000698257, ENST00000698258, ENST00000698259
RefSeq mRNA: 3 — MANE Select: NM_006019
NM_001351059, NM_006019, NM_006053
CCDS: CCDS53670, CCDS8177
Canonical transcript exons
ENST00000265686 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000904464 | 68041268 | 68041388 |
| ENSE00001117234 | 68043371 | 68043497 |
| ENSE00001166885 | 68050741 | 68050895 |
| ENSE00001270148 | 68042946 | 68043031 |
| ENSE00001363096 | 68039025 | 68039119 |
| ENSE00003460979 | 68047882 | 68047972 |
| ENSE00003471238 | 68049962 | 68050066 |
| ENSE00003500401 | 68047433 | 68047572 |
| ENSE00003533730 | 68049663 | 68049788 |
| ENSE00003558602 | 68043814 | 68043907 |
| ENSE00003560131 | 68044958 | 68045102 |
| ENSE00003560655 | 68050487 | 68050664 |
| ENSE00003561326 | 68044132 | 68044344 |
| ENSE00003586583 | 68041753 | 68041831 |
| ENSE00003608479 | 68047647 | 68047804 |
| ENSE00003625276 | 68042643 | 68042863 |
| ENSE00003630548 | 68043571 | 68043653 |
| ENSE00003655865 | 68050137 | 68050254 |
| ENSE00003670582 | 68048879 | 68048997 |
| ENSE00003690304 | 68049081 | 68049294 |
Expression profiles
Bgee: expression breadth ubiquitous, 148 present calls, max score 99.52.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 32.6843 / max 684.2413, expressed in 1790 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 115518 | 29.8511 | 1776 |
| 115517 | 1.8909 | 1100 |
| 115521 | 0.7958 | 311 |
| 115519 | 0.0922 | 20 |
| 115520 | 0.0544 | 21 |
Top tissues by expression
158 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| granulocyte | CL:0000094 | 99.52 | gold quality |
| blood | UBERON:0000178 | 99.36 | gold quality |
| spleen | UBERON:0002106 | 99.31 | gold quality |
| body of pancreas | UBERON:0001150 | 99.30 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.01 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.99 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.89 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.82 | gold quality |
| endocervix | UBERON:0000458 | 98.69 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.62 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.51 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.44 | gold quality |
| right lung | UBERON:0002167 | 98.41 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.36 | gold quality |
| monocyte | CL:0000576 | 98.30 | gold quality |
| right uterine tube | UBERON:0001302 | 98.23 | gold quality |
| body of uterus | UBERON:0009853 | 98.21 | gold quality |
| left uterine tube | UBERON:0001303 | 98.20 | gold quality |
| leukocyte | CL:0000738 | 98.14 | gold quality |
| vermiform appendix | UBERON:0001154 | 98.10 | gold quality |
| fundus of stomach | UBERON:0001160 | 98.10 | gold quality |
| small intestine | UBERON:0002108 | 98.09 | gold quality |
| transverse colon | UBERON:0001157 | 98.04 | gold quality |
| body of stomach | UBERON:0001161 | 98.04 | gold quality |
| ectocervix | UBERON:0012249 | 97.90 | gold quality |
| right coronary artery | UBERON:0001625 | 97.77 | gold quality |
| minor salivary gland | UBERON:0001830 | 97.75 | gold quality |
| bone marrow | UBERON:0002371 | 97.69 | gold quality |
| bone element | UBERON:0001474 | 97.68 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 97.68 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 16.59 |
| E-CURD-112 | yes | 15.37 |
| E-MTAB-10042 | yes | 10.13 |
| E-MTAB-7606 | no | 659.74 |
| E-GEOD-70580 | no | 520.60 |
| E-MTAB-5061 | no | 3.62 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AP1, ATF6, ELF4, FOSL2, HIF1A, JUN, JUND, MYC, NFKB1, PARP1
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- localization to chromosome 11q12-13 in autosomal dominant osteopetrosis type I (PMID:12054167)
- Sibling pair linkage and association studies between peak bone mineral density and the gene locus for the osteoclast-specific subunit (OC116) of the vacuolar proton pump on chromosome 11p12-13. (PMID:12161516)
- Four novel single nucleotide mutations in the TCIRG1 gene encoding the 116-kDa osteoclast specific subunit of ATP6I affecting splice acceptor or donor sites result in aberrant transcription products. (PMID:12552563)
- There is an association between a polymorphism affecting an API binding site in the promoter of the TCIRG1 gene and bone mass in Scottish women. (PMID:14523594)
- 9 new TCIRG1 mutations were found in recessive osteopetrosis pts. 30% of the pts had c.1674-1G>A (aberrant splicing: r.1674_1884del) or c.2005C>T (protein variation: p.Arg669X). 40% were splicing regulatory sequence substitutions. (PMID:15300850)
- we validated by RT-PCR six new alternative splice events in TCIRG1 in most of the 28 human tissues studied (PMID:15809087)
- TIRC7 acts as an upstream regulatory molecule of cytotoxic T-lymphocyte antigen 4 (CTLA-4) expression. (PMID:17082597)
- HLA-DR alpha 2 domain (sHLA-DRalpha2) induces negative signals by engaging TIRC7 on lymphocytes, inhibiting proliferation and inducing apoptosis in CD4+ and CD8+ T-cells via activation of the intrinsic pathway (PMID:18270567)
- analysis of a novel Alu-Alu recombination-mediated genomic deletion in the TCIRG1 gene in five osteopetrotic patients (PMID:18715141)
- Linkage disequilibrium (LD) mapping of the OPTB locus at the TCIRG1 region and found a unique splice site mutation c.807+5G>A in all Chuvashian OPTB patients studied. (PMID:19172990)
- Mutations in TCIRG1, OSTM1, ClCN7, and TNFRSF11A genes were detected in nine, three, one, and one patientswith infantile malignant osteopetrosis, respectively. (PMID:19507210)
- That the CLCN7 mutations provoke a phenotype as severe as the one caused by TCIRG1 loss of function suggests the affected residues to be crucial for the function of the ClC-7 chloride channel or chloride/proton-exchanger (PMID:20424301)
- V-ATPase localization and activity in kidney cells is regulated via direct PKA-dependent phosphorylation of the A subunit at Ser-175 (PMID:20525692)
- The novel mutation c.242delC of TCIRG1 in infantile malignant osteopetrosis (PMID:21042819)
- Our data highlights the importance of two large genomic deletions and mutations in the 5’ UTR with respect to patient management and, more critically, to prenatal diagnosis (PMID:22231430)
- The N termini of a-subunit isoforms are involved in signaling between vacuolar H+-ATPase (V-ATPase) and cytohesin-2 (PMID:23288846)
- The function of vacuolar ATPase (V-ATPase) a subunit isoforms in invasiveness of MCF10a and MCF10CA1a human breast cancer cells. (PMID:24072707)
- analysis demonstrates that CLCN7 and TCIRG1 mutations differentially affect bone matrix mineralization, and that there is a need to modify the current classification of osteopetrosis (PMID:24108692)
- TIRC7 is involved in inflammation in multiple sclerosis and anti-TIRC7 mAb can prevent immune activation via selective inhibition of Th1- and Th17-associated cytokine expression. (PMID:24526664)
- TIRC7 might be associated with the pathogenesis of ITP, and TIRC7 levels could be used as an indicator to evaluate patients’ response to HD-DXM treatment. (PMID:24617318)
- TCIRG1-associated congenital neutropenia. (PMID:24753205)
- Data indicate that the effects of epiregulin (EREG) and V-ATPase (TCIRG1) single nucleotide polymorphism (SNP) on pulmonary tuberculosis susceptibility, to the extent that they exist, are dependent on gene-gene interactions in West African populations. (PMID:24898387)
- An A to T transversion in the fourth base of the intron 2 donor splice site (c.117+4A–>T) in TCIRG1 in the Ashkenazi Jewish (AJ) population was found to be responsible for osteopetrosis. (PMID:24989235)
- Increased expression of TIRC7 in plasma was associated with the severity of acute graft-versus-host disease. (PMID:25623380)
- an intronic region in TCIRG1 that seems to be particularly prone to splicing mutations, allowing the production of a small amount of protein sufficient to reduce the severity of the phenotype usually associated with TCIRG1 defects. (PMID:25829125)
- TIRC7 might be involved in the pathogenesis of aplastic anemia. (PMID:26049920)
- The highly invasive human breast cancer cell lines express higher levels of the a3 isoform than poorly invasive lines; knockdown of a3 reduces both expression of V-ATPases at the plasma membrane and in vitro invasion of breast tumor cells. (Review) (PMID:26906430)
- In this study, whole exome sequencing (WES) was successfully used in six patients with malignant infantile osteopetrosis (MIOP) and identified mutations in four MIOP-related genes (CLCN7, TCIRG1, SNX10, and TNFRSF11A). (PMID:27187610)
- Nine rare missense variants at evolutionarily conserved sites in TCIRG1 are associated with lower absolute neutrophil count. (PMID:27229898)
- TCIRG1 gene mutation in a Chinese family is associated with infantile malignant osteopetrosis. (PMID:28604959)
- The aim of this study was to develop a clinically applicable lentiviral vector expressing TCIRG1 to correct osteoclast function in Infantile malignant osteopetrosis (PMID:28726516)
- TCIRG1 may be involved in endolysosomal transport-a process known to be important to development of early onset AD. (PMID:28738127)
- Case Reports: TCIRG1-dependent osteopetrosis with a mild clinical course in Chinese patients. (PMID:28816234)
- Since a3 subunit of V-ATPase complex plays a crucial role in bone resorption process, structurally abnormal a3 subunit might have adversely affected bone resorption process, leading to infantile osteopetrosis in Pakistani family. (PMID:29237407)
- TCIRG1 functions as a metastasis-enhancing gene by modulating cellular growth and epithelial-mesenchymal transition in the hepatocellular carcinoma progression. (PMID:29303507)
- TCIRG1 mutation is associated with osteopetrosis. (PMID:30431110)
- mutations in SLC29A3 and TCIRG1 in patients with Sclerosing bone dysplasias with hallmarks of dysosteosclerosis. (PMID:30537558)
- The study revealed that five of the twelve cases of autosomal recessive osteopetrosis carry at least one mutation of TCIRG1 gene. (PMID:30898715)
- Novel c.G630A TCIRG1 mutation causes aberrant splicing resulting in an unusually mild form of autosomal recessive osteopetrosis. (PMID:31111556)
- The Vacuolar H(+) ATPase alpha3 Subunit Negatively Regulates Migration and Invasion of Human Pancreatic Ductal Adenocarcinoma Cells. (PMID:32085585)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tcirg1a | ENSDARG00000016835 |
| danio_rerio | tcirg1b | ENSDARG00000105142 |
| mus_musculus | Tcirg1 | ENSMUSG00000001750 |
| rattus_norvegicus | Tcirg1 | ENSRNOG00000017220 |
| drosophila_melanogaster | Vha100-3 | FBGN0028669 |
Paralogs (3): ATP6V0A1 (ENSG00000033627), ATP6V0A4 (ENSG00000105929), ATP6V0A2 (ENSG00000185344)
Protein
Protein identifiers
V-type proton ATPase 116 kDa subunit a 3 — Q13488 (reviewed: Q13488)
Alternative names: Osteoclastic proton pump 116 kDa subunit, T-cell immune regulator 1, T-cell immune response cDNA7 protein, Vacuolar proton translocating ATPase 116 kDa subunit a isoform 3
All UniProt accessions (10): Q13488, A0A8V8TM28, A0A8V8TN16, A0A8V8TNB5, E9PM12, E9PMC5, E9PNA6, H0YCE3, H0YEL3, Q8TCH1
UniProt curated annotations — full annotation on UniProt →
Function. Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment. Seems to be directly involved in T-cell activation.
Subunit / interactions. V-ATPase is a heteromultimeric enzyme made up of two complexes: the ATP-hydrolytic V1 complex and the proton translocation V0 complex. The V1 complex consists of three catalytic AB heterodimers that form a heterohexamer, three peripheral stalks each consisting of EG heterodimers, one central rotor including subunits D and F, and the regulatory subunits C and H. The proton translocation complex V0 consists of the proton transport subunit a, a ring of proteolipid subunits c9c’’, rotary subunit d, subunits e and f, and the accessory subunits ATP6AP1/Ac45 and ATP6AP2/PRR.
Subcellular location. Membrane.
Tissue specificity. Isoform long is highly expressed in osteoclastomas. Isoform short is highly expressed in thymus.
Disease relevance. Osteopetrosis, autosomal recessive 1 (OPTB1) [MIM:259700] A rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. Osteopetrosis occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. Recessive osteopetrosis commonly manifests in early infancy with macrocephaly, feeding difficulties, evolving blindness and deafness, bone marrow failure, severe anemia, and hepatosplenomegaly. Deafness and blindness are generally thought to represent effects of pressure on nerves. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the V-ATPase 116 kDa subunit family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13488-1 | Long | yes |
| Q13488-2 | Short |
RefSeq proteins (3): NP_001337988, NP_006010, NP_006044 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002490 | V-ATPase_116kDa_su | Family |
| IPR026028 | V-type_ATPase_116kDa_su_euka | Family |
Pfam: PF01496
UniProt features (31 total): topological domain 9, transmembrane region 8, sequence variant 8, region of interest 2, sequence conflict 2, chain 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13488-F1 | 83.52 | 0.40 |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-1222556 | ROS and RNS production in phagocytes |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-77387 | Insulin receptor recycling |
| R-HSA-917977 | Transferrin endocytosis and recycling |
| R-HSA-9639288 | Amino acids regulate mTORC1 |
| R-HSA-983712 | Ion channel transport |
MSigDB gene sets: 605 (showing top):
GOBP_MYELOID_CELL_DIFFERENTIATION, REACTOME_SIGNALING_BY_INSULIN_RECEPTOR, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_VACUOLE_ORGANIZATION, GOBP_VESICLE_LOCALIZATION, GOBP_INFLAMMATORY_RESPONSE, GOBP_RESPONSE_TO_PEPTIDE, GOBP_B_CELL_ACTIVATION, GOCC_VACUOLAR_MEMBRANE, GOCC_SECRETORY_GRANULE, ENK_UV_RESPONSE_KERATINOCYTE_UP, MODULE_45, GOBP_INSULIN_SECRETION, GOBP_T_CELL_HOMEOSTASIS
GO Biological Process (45): autophagosome assembly (GO:0000045), ossification (GO:0001503), osteoclast proliferation (GO:0002158), intracellular calcium ion homeostasis (GO:0006874), apoptotic process (GO:0006915), inflammatory response (GO:0006954), cellular defense response (GO:0006968), vacuolar acidification (GO:0007035), protein catabolic process in the vacuole (GO:0007039), lysosomal lumen acidification (GO:0007042), positive regulation of cell population proliferation (GO:0008284), regulation of proton transport (GO:0010155), response to silver ion (GO:0010272), gene expression (GO:0010467), regulation of gene expression (GO:0010468), immunoglobulin mediated immune response (GO:0016064), macroautophagy (GO:0016236), optic nerve development (GO:0021554), establishment of cell polarity (GO:0030010), B cell differentiation (GO:0030183), T cell differentiation (GO:0030217), osteoclast differentiation (GO:0030316), ruffle organization (GO:0031529), memory T cell activation (GO:0035709), T-helper 1 cell activation (GO:0035711), T cell homeostasis (GO:0043029), tooth eruption (GO:0044691), bone resorption (GO:0045453), regulation of osteoblast differentiation (GO:0045667), pH reduction (GO:0045851), regulation of insulin secretion (GO:0050796), establishment of vesicle localization (GO:0051650), retina development in camera-type eye (GO:0060041), hematopoietic stem cell homeostasis (GO:0061484), enamel mineralization (GO:0070166), cellular response to cytokine stimulus (GO:0071345), phagosome acidification (GO:0090383), dentin mineralization (GO:0097188), proton transmembrane transport (GO:1902600), monoatomic ion transport (GO:0006811)
GO Molecular Function (3): proton-transporting ATPase activity, rotational mechanism (GO:0046961), ATPase binding (GO:0051117), protein binding (GO:0005515)
GO Cellular Component (16): vacuolar proton-transporting V-type ATPase, V0 domain (GO:0000220), nucleus (GO:0005634), lysosomal membrane (GO:0005765), late endosome (GO:0005770), plasma membrane (GO:0005886), endosome membrane (GO:0010008), apical plasma membrane (GO:0016324), vacuolar proton-transporting V-type ATPase complex (GO:0016471), phagocytic vesicle membrane (GO:0030670), proton-transporting V-type ATPase complex (GO:0033176), ficolin-1-rich granule membrane (GO:0101003), lysosome (GO:0005764), membrane (GO:0016020), secretory granule membrane (GO:0030667), proton-transporting V-type ATPase, V0 domain (GO:0033179), phagocytic vesicle (GO:0045335)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Innate Immune System | 2 |
| Signaling by Insulin receptor | 1 |
| Iron uptake and transport | 1 |
| Cellular response to starvation | 1 |
| Transport of small molecules | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| defense response | 2 |
| vacuolar membrane | 2 |
| endosome | 2 |
| cytoplasmic vesicle membrane | 2 |
| bounding membrane of organelle | 2 |
| proton-transporting V-type ATPase complex | 2 |
| Atg12 activating enzyme activity | 1 |
| protein-phosphatidylethanolamide deconjugating activity | 1 |
| Atg12 conjugating enzyme activity | 1 |
| Atg12 ligase activity | 1 |
| organelle assembly | 1 |
| Atg1/ULK1 kinase complex assembly | 1 |
| autophagosome organization | 1 |
| multicellular organismal process | 1 |
| leukocyte proliferation | 1 |
| intracellular monoatomic cation homeostasis | 1 |
| calcium ion homeostasis | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| intracellular pH reduction | 1 |
| vacuole | 1 |
| protein catabolic process | 1 |
| vacuolar acidification | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| positive regulation of cellular process | 1 |
| proton transmembrane transport | 1 |
| regulation of monoatomic cation transmembrane transport | 1 |
| response to metal ion | 1 |
| macromolecule biosynthetic process | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| B cell mediated immunity | 1 |
| autophagosome assembly | 1 |
| autophagy | 1 |
| cranial nerve development | 1 |
| establishment or maintenance of cell polarity | 1 |
| lymphocyte differentiation | 1 |
| B cell activation | 1 |
Protein interactions and networks
STRING
1788 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TCIRG1 | ATP6V1B1 | P15313 | 979 |
| TCIRG1 | CLCN7 | P51798 | 965 |
| TCIRG1 | OSTM1 | Q86WC4 | 964 |
| TCIRG1 | ATP12A | P54707 | 923 |
| TCIRG1 | ATP4A | P20648 | 923 |
| TCIRG1 | PLEKHM1 | Q9Y4G2 | 889 |
| TCIRG1 | CA2 | P00918 | 869 |
| TCIRG1 | CCKBR | P32239 | 817 |
| TCIRG1 | ATP6V1B2 | P21281 | 797 |
| TCIRG1 | ATP6V0C | P27449 | 792 |
| TCIRG1 | ATP6V0D2 | Q8N8Y2 | 792 |
| TCIRG1 | ATP6V1C1 | P21283 | 782 |
| TCIRG1 | ATP6V0D1 | P12953 | 779 |
| TCIRG1 | ATP6V1A | P38606 | 773 |
| TCIRG1 | ATP6V1C2 | Q8NEY4 | 773 |
IntAct
52 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ATP6AP2 | ATP6V0C | psi-mi:“MI:0914”(association) | 0.730 |
| TCIRG1 | ATP6AP2 | psi-mi:“MI:0914”(association) | 0.640 |
| ATP6V1C2 | ATP6V1G1 | psi-mi:“MI:0914”(association) | 0.640 |
| TLX3 | TCIRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| POGZ | TCIRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ADD2 | ADD1 | psi-mi:“MI:0914”(association) | 0.560 |
| ATP6AP2 | ATP6V1C1 | psi-mi:“MI:0914”(association) | 0.530 |
| TCIRG1 | AP3D1 | psi-mi:“MI:0914”(association) | 0.530 |
| ATP6V1G2 | ATP6V1B1 | psi-mi:“MI:0914”(association) | 0.530 |
| GORASP1 | PPP6R2 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR1 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| MCAM | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| RFFL | TUSC2 | psi-mi:“MI:0914”(association) | 0.530 |
| pipB2 | SCD | psi-mi:“MI:0914”(association) | 0.460 |
| PLEKHN1 | TCIRG1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | SNAP23 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GPC1 | GANAB | psi-mi:“MI:0915”(physical association) | 0.400 |
| SDC1 | ILVBL | psi-mi:“MI:0915”(physical association) | 0.400 |
| TCIRG1 | KCNK1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TCIRG1 | TERF1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| SYNCRIP | ARHGAP32 | psi-mi:“MI:0914”(association) | 0.350 |
| BAG6 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| SORT1 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.350 |
| GOLT1B | psi-mi:“MI:0914”(association) | 0.350 | |
| ATP6V0D1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ATP6V0D2 | ATP6V0C | psi-mi:“MI:0914”(association) | 0.350 |
| NS3 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (91): TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Reconstituted Complex), TCIRG1 (Protein-RNA), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), TCIRG1 (Affinity Capture-MS), POGZ (Two-hybrid)
ESM2 similar proteins: A4FUB8, E9QBI7, O35394, O95070, O97681, P15920, P58872, P58873, Q0DWA9, Q0P5E4, Q12270, Q12893, Q13488, Q1RMH4, Q28C60, Q3UVK0, Q4V8F3, Q52NJ0, Q5RBS4, Q5XIT3, Q5Z413, Q6BSA9, Q6C741, Q6CDV6, Q6CR06, Q6DCK1, Q6FSG0, Q6P6G5, Q6UPR8, Q755H8, Q7Z2K6, Q874X5, Q8BHC7, Q8BXJ9, Q8RXQ2, Q8TEB9, Q8VC82, Q8VZ96, Q91VU1, Q91XB7
Diamond homologs: A1A5G6, B2MZD0, G5EEK9, G5EGP4, O13742, O29106, O57721, O97681, P15920, P25286, P30628, P32563, P37296, Q01290, Q13488, Q29466, Q54E04, Q57675, Q5JDS2, Q5R422, Q8AVM5, Q8RWZ7, Q8W4S4, Q920R6, Q93050, Q9HBG4, Q9I8D0, Q9SJT7, Q9UWW3, Q9UXU2, Q9Y487, Q9Z1G4, Q9YEA0, O27041, O83544, Q9RWH3, Q9HND8
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TCIRG1 | “form complex” | V-ATPase | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 71 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Regulation of MITF-M-dependent genes involved in lysosome biogenesis and autophagy | 5 | 68.5× | 4e-07 |
| Insulin receptor recycling | 8 | 62.1× | 6e-11 |
| Transferrin endocytosis and recycling | 8 | 60.1× | 6e-11 |
| ROS and RNS production in phagocytes | 8 | 54.8× | 9e-11 |
| Amino acids regulate mTORC1 | 8 | 32.7× | 6e-09 |
| Ion channel transport | 8 | 15.7× | 2e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| synaptic vesicle lumen acidification | 7 | 102.4× | 1e-10 |
| vacuolar acidification | 5 | 57.2× | 4e-06 |
| regulation of macroautophagy | 8 | 37.0× | 1e-08 |
| proton transmembrane transport | 5 | 24.4× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1777 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 103 |
| Likely pathogenic | 115 |
| Uncertain significance | 614 |
| Likely benign | 765 |
| Benign | 26 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1068788 | NM_006019.4(TCIRG1):c.797del (p.Glu266fs) | Pathogenic |
| 1069133 | NM_006019.4(TCIRG1):c.685G>T (p.Gly229Ter) | Pathogenic |
| 1070235 | NM_006019.4(TCIRG1):c.2233dup (p.Ala745fs) | Pathogenic |
| 1074841 | NM_006019.4(TCIRG1):c.524_527dup (p.His177fs) | Pathogenic |
| 1075445 | NM_006019.4(TCIRG1):c.1349dup (p.Met450fs) | Pathogenic |
| 1362729 | NM_006019.4(TCIRG1):c.480del (p.Pro161fs) | Pathogenic |
| 1388769 | NM_006019.4(TCIRG1):c.1498del (p.Leu500fs) | Pathogenic |
| 1418205 | NM_006019.4(TCIRG1):c.1776G>A (p.Trp592Ter) | Pathogenic |
| 1439125 | NM_006019.4(TCIRG1):c.904_952del (p.Val302fs) | Pathogenic |
| 1447238 | NM_006019.4(TCIRG1):c.2383_2384del (p.Ala796fs) | Pathogenic |
| 1447247 | NM_006019.4(TCIRG1):c.2160_2178del (p.Ile721fs) | Pathogenic |
| 1449740 | NC_000011.9:g.(?67814890)(67815449_?)del | Pathogenic |
| 1451544 | NM_006019.4(TCIRG1):c.1736del (p.Gly579fs) | Pathogenic |
| 1452936 | NM_006019.4(TCIRG1):c.1230del (p.Leu411fs) | Pathogenic |
| 1453401 | NM_006019.4(TCIRG1):c.474dup (p.Gly159fs) | Pathogenic |
| 1453967 | NM_006019.4(TCIRG1):c.2331dup (p.Ala778fs) | Pathogenic |
| 1455306 | NC_000011.9:g.(?67814890)(67818296_?)del | Pathogenic |
| 1457984 | NM_006019.4(TCIRG1):c.174_175del (p.Cys58_Glu59delinsTer) | Pathogenic |
| 1458624 | NM_006019.4(TCIRG1):c.1348_1376dup (p.Phe459fs) | Pathogenic |
| 1460225 | NM_006019.4(TCIRG1):c.688C>T (p.Gln230Ter) | Pathogenic |
| 1492118 | NM_006019.4(TCIRG1):c.1305+1G>A | Pathogenic |
| 1684665 | NM_006019.4(TCIRG1):c.807+2T>G | Pathogenic |
| 1684673 | NM_006019.4(TCIRG1):c.969G>A (p.Trp323Ter) | Pathogenic |
| 1684679 | NM_006019.4(TCIRG1):c.2236+1G>C | Pathogenic |
| 1684680 | NM_006019.4(TCIRG1):c.1885C>T (p.Gln629Ter) | Pathogenic |
| 189246 | NM_006019.4(TCIRG1):c.1674-1G>A | Pathogenic |
| 1913378 | NM_006019.4(TCIRG1):c.1370_1384del (p.Thr457_Tyr461del) | Pathogenic |
| 1980632 | NM_006019.4(TCIRG1):c.1037_1040dup (p.Val348fs) | Pathogenic |
| 1988317 | NM_006019.4(TCIRG1):c.1560G>A (p.Trp520Ter) | Pathogenic |
| 2008908 | NM_006019.4(TCIRG1):c.2104_2105del (p.Glu702fs) | Pathogenic |
SpliceAI
4169 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:68039117:GGG:G | donor_gain | 1.0000 |
| 11:68039118:GG:G | donor_gain | 1.0000 |
| 11:68039118:GGG:G | donor_gain | 1.0000 |
| 11:68039119:GG:G | donor_gain | 1.0000 |
| 11:68039120:G:GG | donor_gain | 1.0000 |
| 11:68039120:GTGA:G | donor_loss | 1.0000 |
| 11:68041261:C:G | acceptor_gain | 1.0000 |
| 11:68041263:CACA:C | acceptor_loss | 1.0000 |
| 11:68041264:ACAG:A | acceptor_gain | 1.0000 |
| 11:68041266:A:AG | acceptor_gain | 1.0000 |
| 11:68041266:AG:A | acceptor_gain | 1.0000 |
| 11:68041267:G:GT | acceptor_gain | 1.0000 |
| 11:68041267:GG:G | acceptor_gain | 1.0000 |
| 11:68041267:GGA:G | acceptor_gain | 1.0000 |
| 11:68041267:GGAC:G | acceptor_gain | 1.0000 |
| 11:68041267:GGACC:G | acceptor_gain | 1.0000 |
| 11:68041345:GC:G | donor_gain | 1.0000 |
| 11:68041384:GAGAC:G | donor_gain | 1.0000 |
| 11:68041386:GAC:G | donor_gain | 1.0000 |
| 11:68041387:ACG:A | donor_loss | 1.0000 |
| 11:68041389:G:GG | donor_gain | 1.0000 |
| 11:68041747:CCACA:C | acceptor_loss | 1.0000 |
| 11:68041748:CACA:C | acceptor_loss | 1.0000 |
| 11:68041749:ACAG:A | acceptor_loss | 1.0000 |
| 11:68041750:CA:C | acceptor_loss | 1.0000 |
| 11:68041751:A:AC | acceptor_loss | 1.0000 |
| 11:68041751:A:AG | acceptor_gain | 1.0000 |
| 11:68041752:G:GA | acceptor_gain | 1.0000 |
| 11:68041752:GCTC:G | acceptor_gain | 1.0000 |
| 11:68041752:GCTCA:G | acceptor_gain | 1.0000 |
AlphaMissense
5384 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:68050222:T:C | L735P | 0.999 |
| 11:68050230:T:A | W738R | 0.999 |
| 11:68050230:T:C | W738R | 0.999 |
| 11:68048926:G:C | K534N | 0.998 |
| 11:68048926:G:T | K534N | 0.998 |
| 11:68050232:G:C | W738C | 0.997 |
| 11:68050232:G:T | W738C | 0.997 |
| 11:68050239:A:C | S741R | 0.997 |
| 11:68050241:C:A | S741R | 0.997 |
| 11:68050241:C:G | S741R | 0.997 |
| 11:68050658:T:C | L803P | 0.997 |
| 11:68050748:T:C | F808L | 0.997 |
| 11:68050750:C:A | F808L | 0.997 |
| 11:68050750:C:G | F808L | 0.997 |
| 11:68050760:T:C | F812L | 0.997 |
| 11:68050762:C:A | F812L | 0.997 |
| 11:68050762:C:G | F812L | 0.997 |
| 11:68047477:T:C | F404L | 0.996 |
| 11:68047479:C:A | F404L | 0.996 |
| 11:68047479:C:G | F404L | 0.996 |
| 11:68048917:C:A | N531K | 0.996 |
| 11:68048917:C:G | N531K | 0.996 |
| 11:68050213:C:A | A732D | 0.996 |
| 11:68050645:C:G | H799D | 0.996 |
| 11:68050185:T:C | F723L | 0.995 |
| 11:68050187:C:A | F723L | 0.995 |
| 11:68050187:C:G | F723L | 0.995 |
| 11:68050204:C:A | S729Y | 0.995 |
| 11:68050204:C:T | S729F | 0.995 |
| 11:68050216:C:T | S733F | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000047233 (11:68037381 G>A,T), RS1000520573 (11:68051772 G>A,C), RS1000538925 (11:68043362 G>A), RS1000613230 (11:68044401 G>A), RS1000664757 (11:68048025 G>C), RS1000666892 (11:68047264 C>A,G,T), RS1000724351 (11:68048199 T>C), RS1000940711 (11:68037432 T>A,C), RS1001080626 (11:68037629 C>G), RS1001191391 (11:68038976 T>A,C), RS1001228717 (11:68043137 A>AG), RS1001671587 (11:68044470 G>C), RS1001985320 (11:68047771 G>A), RS1002118866 (11:68038095 C>T), RS1002149192 (11:68038508 G>A,C)
Disease associations
OMIM: gene MIM:604592 | disease phenotypes: MIM:259700, MIM:202700, MIM:224300, MIM:200150, MIM:618222
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive osteopetrosis 1 | Definitive | Autosomal recessive |
| autosomal recessive osteopetrosis | Definitive | Autosomal recessive |
| dysosteosclerosis | Supportive | Autosomal recessive |
| autosomal recessive osteopetrosis 6 | Supportive | Autosomal recessive |
| autosomal dominant severe congenital neutropenia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive osteopetrosis 1 | Definitive | AR |
| dysosteosclerosis | Limited | AR |
Mondo (11): autosomal recessive osteopetrosis 1 (MONDO:0009815), osteopetrosis (MONDO:0017198), neutropenia, severe congenital, 1, autosomal dominant (MONDO:0042490), bone disorder (MONDO:0005381), neutropenia (MONDO:0001475), dysosteosclerosis (MONDO:0009138), autosomal recessive osteopetrosis (MONDO:0019026), VPS13A-related neurodegenerative disease (MONDO:0008695), mitochondrial complex I deficiency, nuclear type 2 (MONDO:0032606), autosomal recessive osteopetrosis 6 (MONDO:0012679), autosomal dominant severe congenital neutropenia (MONDO:0008742)
Orphanet (5): Autosomal recessive malignant osteopetrosis (Orphanet:667), Osteopetrosis and related disorders (Orphanet:2781), Rare bone disease related to a common gene or pathway defect (Orphanet:364803), Dysosteosclerosis (Orphanet:1782), Choreoacanthocytosis (Orphanet:2388)
HPO phenotypes
127 total (30 of 127 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000155 | Oral ulcer |
| HP:0000164 | Abnormality of the dentition |
| HP:0000230 | Gingivitis |
| HP:0000238 | Hydrocephalus |
| HP:0000256 | Macrocephaly |
| HP:0000316 | Hypertelorism |
| HP:0000365 | Hearing impairment |
| HP:0000388 | Otitis media |
| HP:0000505 | Visual impairment |
| HP:0000597 | Ophthalmoparesis |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000670 | Carious teeth |
| HP:0000682 | Abnormal dental enamel morphology |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000689 | Dental malocclusion |
| HP:0000704 | Periodontitis |
| HP:0000707 | Abnormality of the nervous system |
| HP:0000772 | Abnormal rib morphology |
| HP:0000774 | Narrow chest |
| HP:0000926 | Platyspondyly |
| HP:0000938 | Osteopenia |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0000978 | Bruising susceptibility |
| HP:0000980 | Pallor |
| HP:0001028 | Hemangioma |
| HP:0001249 | Intellectual disability |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006979_403 | Heel bone mineral density | 2.000000e-12 |
| GCST006979_404 | Heel bone mineral density | 7.000000e-11 |
| GCST90002405_285 | Reticulocyte count | 3.000000e-10 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009270 | heel bone mineral density |
| EFO:0007986 | reticulocyte count |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001847 | Bone Diseases | C05.116 |
| D009503 | Neutropenia | C15.378.243.750.184.564; C15.378.553.546.184.564 |
| D010022 | Osteopetrosis | C05.116.099.708.702.678 |
| C562973 | Dysosteosclerosis (supp.) | |
| C565969 | Neutropenia, Severe Congenital, Autosomal Dominant 1 (supp.) | |
| C564915 | Osteopetrosis, Autosomal Recessive 1 (supp.) | |
| C566931 | Osteopetrosis, Autosomal Recessive 6 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: transporter — V-type ATPase
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases expression, increases expression, increases methylation | 4 |
| Air Pollutants | increases abundance, decreases expression, affects expression | 3 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment, increases expression | 3 |
| Nickel | increases expression | 2 |
| Rotenone | increases expression | 2 |
| Smoke | decreases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Tretinoin | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression, increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| tamibarotene | increases expression | 1 |
| entinostat | increases expression, affects cotreatment | 1 |
| pinostrobin | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| MT19c compound | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Ethanol | affects cotreatment, increases abundance, increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Aspirin | increases expression | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| Demecolcine | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 induced pluripotent stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D0M3 | SYSUSCi004-A | Induced pluripotent stem cell | Male |
| CVCL_YB57 | UNIBSi010-A | Induced pluripotent stem cell | Male |
| CVCL_YB58 | UNIBSi010-B | Induced pluripotent stem cell | Male |
| CVCL_YB59 | UNIBSi010-C | Induced pluripotent stem cell | Male |
Clinical trials (associated diseases)
199 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00030758 | PHASE4 | UNKNOWN | Filgrastim or Pegfilgrastim in Preventing Neutropenia in Women Receiving Chemotherapy Following Surgery for Breast Cancer |
| NCT00125723 | PHASE4 | COMPLETED | FIRST - Study of Pegfilgrastim Administered in the First and Subsequent Cycles of Myelosuppressive Chemotherapy |
| NCT00194857 | PHASE4 | TERMINATED | Treatment of Anemia and Neutropenia in HIV/HCV Coinfected Patients Treated With Pegylated Interferon and Ribavirin |
| NCT00257790 | PHASE4 | COMPLETED | The Tobramycin Study |
| NCT00277160 | PHASE4 | COMPLETED | A Study of Primary Prophylaxis With Neulasta (Pegfilgrastim) Versus Secondary Prophylaxis After Chemotherapy in Elderly Subjects (>/= 65 Years Old) With Cancer |
| NCT00686543 | PHASE4 | COMPLETED | Oral Posaconazole in High Risk Patients With Gastrointestinal Dysfunction (Study P05115) |
| NCT01086878 | PHASE4 | COMPLETED | Safety of Cotrimoxazole in HIV- and HAART-exposed Infants |
| NCT01114165 | PHASE4 | COMPLETED | Value of the LightCycler® SeptiFast Test MGRADE for the Pathogen Detection in Neutropenic Hematological Patients |
| NCT01135589 | PHASE4 | UNKNOWN | Micafungin Prevention Study for Fungal Disease in Child Receiving Allogenic Hematopoietic Stem Cell Transplantation |
| NCT01571518 | PHASE4 | UNKNOWN | Prevention of Neutropenia After Using G-CSF With TAC Chemotherapy |
| NCT02621905 | PHASE4 | COMPLETED | Steady-State Comparative Bioavailability Study in Prophylaxis Patients of Lozanoc® 50 mg With Sporanox® 100 mg |
| NCT02967341 | PHASE4 | UNKNOWN | Blood Draw Validation for Ciprofloxacin Pharmacokinetic Research in Pediatric Cancer Patients |
| NCT04009941 | PHASE4 | COMPLETED | Efficacy and Safety of 4.5mg PEG-rhG-CSF Per Cycle in Preventing Neutropenia After Intensive Chemotherapy for Breast Cancer |
| NCT04904614 | PHASE4 | COMPLETED | Letermovir Use in Heart Transplant Recipients |
| NCT05626530 | PHASE4 | RECRUITING | Letermovir for Secondary Prophylaxis in Solid Organ Transplant Recipients |
| NCT06145321 | PHASE4 | ACTIVE_NOT_RECRUITING | Continuous Versus Bolus Administration of G-CSF in Children With Cancer |
| NCT00004402 | PHASE3 | COMPLETED | Phase III Randomized Study of Interferon Gamma in Children With Severe, Congenital Osteopetrosis |
| NCT00001338 | PHASE3 | COMPLETED | A Prospective, Randomized, Phase III Trial of FLAC (5-Fluorouracil, Leucovorin, Adriamycin, Cytoxan) Chemotherapy With GM-CSF (Granulocyte-Macrophage Colony-Stimulating Factor) Versus PIXY 321 in Advanced Breast Cancer |
| NCT00001646 | PHASE3 | COMPLETED | Voriconazole vs. Amphotericin B in the Treatment of Invasive Aspergillosis |
| NCT00002658 | PHASE3 | UNKNOWN | Combination Chemotherapy, Biological Therapy, and Bone Marrow Transplantation in Treating Patients With Acute Myeloid Leukemia |
| NCT00002719 | PHASE3 | COMPLETED | Combination Chemotherapy With or Without G-CSF in Treating Older Patients With Acute Myeloid Leukemia |
| NCT00003739 | PHASE3 | COMPLETED | Antibiotic Therapy With or Without G-CSF in Treating Children With Neutropenia and Fever Caused by Chemotherapy |
| NCT00020865 | PHASE3 | UNKNOWN | Levofloxacin Compared With Cefepime in Treating Cancer Patients With Fever and Neutropenia |
| NCT00035594 | PHASE3 | COMPLETED | Pegfilgrastim as Support to Advanced Breast Cancer Patients Receiving Chemotherapy |
| NCT00044486 | PHASE3 | COMPLETED | Prophylaxis Trial of Posaconazole Versus Standard Azole Therapy for Neutropenic Patients (Study P01899) |
| NCT00107081 | PHASE3 | TERMINATED | Low-risk Fever and Neutropenia in Children With Cancer: Safety and Efficacy of Oral Antibiotics in an Outpatient Setting |
| NCT00445497 | PHASE3 | UNKNOWN | Early Hospital Discharge or Standard Inpatient Care in Cancer Patients Receiving Antibiotics for Febrile Neutropenia |
| NCT00529282 | PHASE3 | TERMINATED | A Study of Ceftobiprole in Patients With Fever and Neutropenia. |
| NCT00627393 | PHASE3 | COMPLETED | Safety and Effectiveness of Granulocyte Transfusions in Resolving Infection in People With Neutropenia (The RING Study) |
| NCT00770172 | PHASE3 | COMPLETED | G-CSF in Preventing Neutropenia in Patients With Solid Tumors Who Are Receiving Chemotherapy |
| NCT00784368 | PHASE3 | COMPLETED | A Pharmacokinetic Study of JK1211(Itraconazole [Itrizole]) Oral Solution in Participants With Deep Mycosis and Those With Febrile Neutropenia Suspected of Fungal Infection |
| NCT00806351 | PHASE3 | TERMINATED | An Evaluation Of The Effectiveness And Safety Of Anidulafungin Compared To Caspofungin For The Treatment Of Serious Fungal Infection Due To Candida In Patients With A Dysfunctional Immune System |
| NCT00911170 | PHASE3 | COMPLETED | PAVES: Pegfilgrastim Anti-vascular Endothelial Growth Factor (VEGF) Evaluation Study |
| NCT01307579 | PHASE3 | COMPLETED | Caspofungin Versus Fluconazole in Preventing Invasive Fungal Infections (IFI) in Patients Undergoing Chemotherapy for Acute Myeloid Leukemia |
| NCT01371656 | PHASE3 | COMPLETED | Levofloxacin in Preventing Infection in Young Patients With Acute Leukemia Receiving Chemotherapy or Undergoing Stem Cell Transplantation |
| NCT01560195 | PHASE3 | UNKNOWN | A Study of Pegylated rhG-CSF as Support to Advanced Non-Small-Cell Lung Cancer (NSCLC) Patients Receiving Chemotherapy Receiving Chemotherapy |
| NCT01611051 | PHASE3 | COMPLETED | A Study Comparing Pegylated rhG-CSF and rhG-CSF as Support to Breast Cancer Patients Receiving Chemotherapy |
| NCT02238873 | PHASE3 | UNKNOWN | Pegfilgrastim on Day +3 Compared to Day +1 After Salvage Chemotherapy for Patients With Refractory or Relapsed Aggressive Lymphoma |
| NCT02414581 | PHASE3 | COMPLETED | Mouthwash With Chlorhexidine 0.12%/Ethyl Alcohol 7% Compared to Ethyl Alcohol 7% |
| NCT02643420 | PHASE3 | COMPLETED | SPI-2012 vs Pegfilgrastim in the Management of Neutropenia in Participants With Breast Cancer With Docetaxel and Cyclophosphamide (ADVANCE) |
Related Atlas pages
- Associated diseases: autosomal recessive osteopetrosis 1, autosomal recessive osteopetrosis, dysosteosclerosis, autosomal recessive osteopetrosis 6, autosomal dominant severe congenital neutropenia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant severe congenital neutropenia, autosomal recessive osteopetrosis, autosomal recessive osteopetrosis 1, autosomal recessive osteopetrosis 6, bone disorder, dysosteosclerosis, mitochondrial complex I deficiency, nuclear type 2, neutropenia, neutropenia, severe congenital, 1, autosomal dominant, osteopetrosis, VPS13A-related neurodegenerative disease