TCP11L2
geneOn this page
Also known as MGC40368
Summary
TCP11L2 (t-complex 11 like 2, HGNC:28627) is a protein-coding gene on chromosome 12q23.3, encoding T-complex protein 11-like protein 2 (Q8N4U5). Promotes the migration of muscle-derived satellite cells (MDSCs) during differentiation throught interaction with FMNL2 and therefore may participate in microfilament assembly.
Predicted to be involved in muscle cell migration and signal transduction. Predicted to be located in cytoskeleton. Predicted to be part of cytoplasm.
Source: NCBI Gene 255394 — RefSeq curated summary.
At a glance
- Gene–disease (curated): schizophrenia (No Known Disease Relationship, GenCC)
- GWAS associations: 3
- Clinical variants (ClinVar): 93 total
- MANE Select transcript:
NM_152772
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28627 |
| Approved symbol | TCP11L2 |
| Name | t-complex 11 like 2 |
| Location | 12q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC40368 |
| Ensembl gene | ENSG00000166046 |
| Ensembl biotype | protein_coding |
| OMIM | 619889 |
| Entrez | 255394 |
Gene structure
Transcript identifiers
Ensembl transcripts: 13 — 11 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000299045, ENST00000546625, ENST00000547153, ENST00000548428, ENST00000549906, ENST00000551228, ENST00000551802, ENST00000552690, ENST00000553098, ENST00000553143, ENST00000718461, ENST00000910255, ENST00000910256
RefSeq mRNA: 2 — MANE Select: NM_152772
NM_001286262, NM_152772
CCDS: CCDS66456, CCDS9104
Canonical transcript exons
ENST00000299045 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001099287 | 106321486 | 106321706 |
| ENSE00001099317 | 106336032 | 106336213 |
| ENSE00001099320 | 106335639 | 106335826 |
| ENSE00001099330 | 106340826 | 106340998 |
| ENSE00001165377 | 106318344 | 106318464 |
| ENSE00001213960 | 106346286 | 106347003 |
| ENSE00001213986 | 106311041 | 106311232 |
| ENSE00003572690 | 106323510 | 106323646 |
| ENSE00003791404 | 106314358 | 106314493 |
| ENSE00003849719 | 106302733 | 106302941 |
Expression profiles
Bgee: expression breadth ubiquitous, 236 present calls, max score 95.14.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.3599 / max 212.3928, expressed in 1561 samples.
FANTOM5 promoters (11 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 127819 | 4.6516 | 1167 |
| 127818 | 1.7563 | 1074 |
| 127817 | 0.5687 | 115 |
| 127820 | 0.3917 | 143 |
| 127813 | 0.2375 | 49 |
| 127812 | 0.2314 | 51 |
| 127821 | 0.1923 | 72 |
| 127815 | 0.1152 | 34 |
| 206878 | 0.0902 | 36 |
| 127814 | 0.0694 | 26 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| bone marrow cell | CL:0002092 | 95.14 | gold quality |
| right uterine tube | UBERON:0001302 | 93.31 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.26 | gold quality |
| blood | UBERON:0000178 | 91.49 | gold quality |
| tendon | UBERON:0000043 | 91.01 | gold quality |
| corpus callosum | UBERON:0002336 | 90.95 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 90.48 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 90.26 | gold quality |
| monocyte | CL:0000576 | 88.87 | gold quality |
| leukocyte | CL:0000738 | 88.86 | gold quality |
| adrenal tissue | UBERON:0018303 | 88.73 | gold quality |
| buccal mucosa cell | CL:0002336 | 88.70 | gold quality |
| apex of heart | UBERON:0002098 | 87.83 | gold quality |
| medial globus pallidus | UBERON:0002477 | 87.51 | gold quality |
| colonic epithelium | UBERON:0000397 | 87.42 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 87.23 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 87.20 | gold quality |
| muscle of leg | UBERON:0001383 | 85.93 | gold quality |
| gastrocnemius | UBERON:0001388 | 85.57 | gold quality |
| oocyte | CL:0000023 | 84.88 | gold quality |
| granulocyte | CL:0000094 | 84.86 | gold quality |
| globus pallidus | UBERON:0001875 | 84.85 | gold quality |
| heart left ventricle | UBERON:0002084 | 84.83 | gold quality |
| minor salivary gland | UBERON:0001830 | 84.50 | gold quality |
| sural nerve | UBERON:0015488 | 84.29 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.14 | gold quality |
| esophagus mucosa | UBERON:0002469 | 84.14 | gold quality |
| cardiac ventricle | UBERON:0002082 | 84.00 | gold quality |
| stromal cell of endometrium | CL:0002255 | 83.91 | gold quality |
| islet of Langerhans | UBERON:0000006 | 83.82 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.05 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
50 targeting TCP11L2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-589-3P | 99.91 | 69.62 | 2088 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-3686 | 99.90 | 70.53 | 2432 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-4672 | 99.50 | 71.58 | 2893 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tcp11l2 | ENSDARG00000027316 |
| mus_musculus | Tcp11l2 | ENSMUSG00000020034 |
| rattus_norvegicus | Tcp11l2 | ENSRNOG00000007587 |
| drosophila_melanogaster | CG16721 | FBGN0029820 |
| caenorhabditis_elegans | WBGENE00010875 |
Paralogs (4): TCP11 (ENSG00000124678), TCP11L1 (ENSG00000176148), TCP11X2 (ENSG00000215029), TCP11X1 (ENSG00000268235)
Protein
Protein identifiers
T-complex protein 11-like protein 2 — Q8N4U5 (reviewed: Q8N4U5)
All UniProt accessions (7): Q8N4U5, F8VRQ3, F8VU20, F8VW27, F8W0R5, F8W1M6, G3V1Z2
UniProt curated annotations — full annotation on UniProt →
Function. Promotes the migration of muscle-derived satellite cells (MDSCs) during differentiation throught interaction with FMNL2 and therefore may participate in microfilament assembly.
Subunit / interactions. Interacts with FMNL2; this interaction promotes muscle-derived satellite cell (MDSC) migration and differentiation.
Subcellular location. Cytoplasm. Cytoskeleton.
Similarity. Belongs to the TCP11 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N4U5-1 | 1 | yes |
| Q8N4U5-2 | 2 |
RefSeq proteins (2): NP_001273191, NP_689985* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008862 | Tcp11 | Family |
Pfam: PF05794
UniProt features (11 total): sequence variant 3, sequence conflict 2, splice variant 2, chain 1, region of interest 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N4U5-F1 | 81.44 | 0.54 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 16
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 182 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_UP, GSE45365_NK_CELL_VS_CD8_TCELL_UP, IVANOVA_HEMATOPOIESIS_MATURE_CELL, FREAC3_01, GATA6_01, WTGAAAT_UNKNOWN, HFH4_01, RYTTCCTG_ETS2_B, CUI_TCF21_TARGETS_2_DN, CART1_01, GOBP_MUSCLE_CELL_MIGRATION, EVI1_04, GOCC_NUCLEAR_SPECK, GOCC_NUCLEAR_BODY, GOCC_RIBONUCLEOPROTEIN_GRANULE
GO Biological Process (2): signal transduction (GO:0007165), muscle cell migration (GO:0014812)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (2): cytoplasm (GO:0005737), cytoskeleton (GO:0005856)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell migration | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
487 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TCP11L2 | TMEM263 | Q8WUH6 | 558 |
| TCP11L2 | POLR3B | Q9NW08 | 536 |
| TCP11L2 | GPR137C | Q8N3F9 | 472 |
| TCP11L2 | TMEM234 | Q8WY98 | 462 |
| TCP11L2 | GRPR | P30550 | 442 |
| TCP11L2 | MGAT4C | Q9UBM8 | 433 |
| TCP11L2 | XKRX | Q6PP77 | 430 |
| TCP11L2 | PRDM4 | Q9UKN5 | 428 |
| TCP11L2 | PTPRK | Q15262 | 402 |
| TCP11L2 | ZSCAN20 | P17040 | 397 |
| TCP11L2 | ZNF286A | Q9HBT8 | 391 |
| TCP11L2 | DIPK1C | Q0P6D2 | 390 |
| TCP11L2 | ARHGAP23 | Q9P227 | 387 |
| TCP11L2 | ENKUR | Q8TC29 | 384 |
| TCP11L2 | DYNLT2 | Q8IZS6 | 380 |
IntAct
50 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TUBA4A | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.800 |
| TUBA1C | TXNDC9 | psi-mi:“MI:0914”(association) | 0.730 |
| TUBA1B | TXNDC9 | psi-mi:“MI:0914”(association) | 0.640 |
| TUBA1C | CCT6A | psi-mi:“MI:0914”(association) | 0.640 |
| TUBA4A | TXNDC9 | psi-mi:“MI:0914”(association) | 0.640 |
| TUBA1A | TUBA4A | psi-mi:“MI:0914”(association) | 0.610 |
| TCP11L2 | ACTA2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| HGS | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TCP11L2 | CXXC1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TCP11L2 | TUBA8 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BAG6 | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KLF11 | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TUBA3E | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TTC5 | TUBA4A | psi-mi:“MI:0914”(association) | 0.530 |
| TUBA1C | TUBA4A | psi-mi:“MI:0914”(association) | 0.530 |
| TUBA4A | PLD2 | psi-mi:“MI:0914”(association) | 0.530 |
| TUBA1A | TUBAL3 | psi-mi:“MI:0914”(association) | 0.420 |
| ACAD11 | TCP11L2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TUBA1A | CAPZB | psi-mi:“MI:0914”(association) | 0.350 |
| TUBA1A | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| TXNDC9 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (34): TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Proximity Label-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-MS), ACTA2 (Affinity Capture-MS), TCP11L2 (Proximity Label-MS), TCP11L2 (Affinity Capture-MS), TCP11L2 (Affinity Capture-RNA)
ESM2 similar proteins: A0JMW6, A1A535, A1A5P5, A1L1L2, A1L2I9, A2BID5, A4FV45, A7Z033, F1QN74, P56695, Q08CY4, Q0KK59, Q14D04, Q2PW47, Q3UHQ6, Q568Z0, Q5FWU8, Q5JWR5, Q5PQS3, Q5SPP5, Q5U249, Q642P2, Q68F70, Q68Y81, Q6DRL5, Q6GPP1, Q6GQ26, Q6IV68, Q6NUQ4, Q6PI53, Q7SYB2, Q7Z3E5, Q7ZYV9, Q80V62, Q80X82, Q8BL99, Q8BM55, Q8CIM8, Q8JGR7, Q8K1H7
Diamond homologs: A7Z033, B4DZS4, Q01755, Q568Z0, Q5H9J9, Q5XI00, Q8BTG3, Q8K1H7, Q8N4U5, Q8WWU5, Q9NUJ3
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 31 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane | 9 | 195.8× | 2e-18 |
| Transport of connexons to the plasma membrane | 9 | 195.8× | 2e-18 |
| Formation of tubulin folding intermediates by CCT/TriC | 11 | 186.1× | 7e-22 |
| Cooperation of Prefoldin and TriC/CCT in actin and tubulin folding | 11 | 179.5× | 7e-22 |
| Gap junction trafficking and regulation | 9 | 171.3× | 5e-18 |
| Gap junction trafficking | 9 | 171.3× | 5e-18 |
| Post-chaperonin tubulin folding pathway | 9 | 171.3× | 5e-18 |
| Activation of AMPK downstream of NMDARs | 9 | 137.0× | 5e-17 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitotic cell cycle | 10 | 44.6× | 1e-12 |
| microtubule cytoskeleton organization | 11 | 44.5× | 8e-14 |
| cell division | 6 | 9.2× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
93 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 68 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1426 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:106311233:G:GG | donor_gain | 1.0000 |
| 12:106314354:TCAG:T | acceptor_loss | 1.0000 |
| 12:106314355:CA:C | acceptor_loss | 1.0000 |
| 12:106314356:A:AG | acceptor_gain | 1.0000 |
| 12:106314356:A:T | acceptor_loss | 1.0000 |
| 12:106314357:G:GT | acceptor_gain | 1.0000 |
| 12:106314357:GC:G | acceptor_gain | 1.0000 |
| 12:106314357:GCA:G | acceptor_gain | 1.0000 |
| 12:106314357:GCAA:G | acceptor_gain | 1.0000 |
| 12:106314357:GCAAC:G | acceptor_gain | 1.0000 |
| 12:106314491:G:GT | donor_gain | 1.0000 |
| 12:106314491:GAG:G | donor_gain | 1.0000 |
| 12:106314493:GGT:G | donor_loss | 1.0000 |
| 12:106314495:T:A | donor_loss | 1.0000 |
| 12:106318342:A:AG | acceptor_gain | 1.0000 |
| 12:106318342:AGTTT:A | acceptor_gain | 1.0000 |
| 12:106318343:G:GA | acceptor_gain | 1.0000 |
| 12:106318343:GTTT:G | acceptor_gain | 1.0000 |
| 12:106318343:GTTTG:G | acceptor_gain | 1.0000 |
| 12:106321480:CTGTA:C | acceptor_loss | 1.0000 |
| 12:106321481:TGTA:T | acceptor_loss | 1.0000 |
| 12:106321482:GTAGA:G | acceptor_loss | 1.0000 |
| 12:106321483:TAGA:T | acceptor_loss | 1.0000 |
| 12:106321484:A:AG | acceptor_gain | 1.0000 |
| 12:106321485:G:GT | acceptor_gain | 1.0000 |
| 12:106321485:GA:G | acceptor_gain | 1.0000 |
| 12:106321485:GAT:G | acceptor_gain | 1.0000 |
| 12:106321485:GATT:G | acceptor_gain | 1.0000 |
| 12:106321485:GATTC:G | acceptor_gain | 1.0000 |
| 12:106321509:C:CA | acceptor_gain | 1.0000 |
AlphaMissense
3440 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:106335662:T:A | W266R | 0.994 |
| 12:106335662:T:C | W266R | 0.994 |
| 12:106318381:T:C | F111L | 0.987 |
| 12:106318383:C:A | F111L | 0.987 |
| 12:106318383:C:G | F111L | 0.987 |
| 12:106321547:T:C | L159S | 0.986 |
| 12:106323619:T:C | F249L | 0.986 |
| 12:106323621:C:A | F249L | 0.986 |
| 12:106323621:C:G | F249L | 0.986 |
| 12:106321559:T:C | L163P | 0.983 |
| 12:106323620:T:C | F249S | 0.983 |
| 12:106321573:G:C | A168P | 0.982 |
| 12:106321652:G:C | R194P | 0.982 |
| 12:106335664:G:C | W266C | 0.982 |
| 12:106335664:G:T | W266C | 0.982 |
| 12:106321641:T:G | C190W | 0.981 |
| 12:106318386:G:C | W112C | 0.979 |
| 12:106318386:G:T | W112C | 0.979 |
| 12:106321490:T:C | L140P | 0.979 |
| 12:106335776:A:C | S304R | 0.979 |
| 12:106335778:T:A | S304R | 0.979 |
| 12:106335778:T:G | S304R | 0.979 |
| 12:106336036:T:C | L322P | 0.979 |
| 12:106318384:T:A | W112R | 0.978 |
| 12:106318384:T:C | W112R | 0.978 |
| 12:106321571:A:C | Q167P | 0.977 |
| 12:106321616:T:A | V182D | 0.977 |
| 12:106335768:T:C | L301P | 0.973 |
| 12:106346450:T:C | F494L | 0.973 |
| 12:106346452:T:A | F494L | 0.973 |
dbSNP variants (sampled 300 via entrez): RS1000005201 (12:106327459 C>T), RS1000005315 (12:106299690 G>C), RS1000057886 (12:106300016 C>A,T), RS1000105350 (12:106335662 T>C), RS1000195425 (12:106323329 A>G), RS1000285752 (12:106328949 C>T), RS1000297254 (12:106317157 C>G,T), RS1000355264 (12:106299234 A>T), RS1000441459 (12:106327763 A>G), RS1000507574 (12:106311335 C>T), RS1000559762 (12:106304431 A>G), RS1000594350 (12:106310994 G>A,C,T), RS1000636137 (12:106329250 A>G), RS1000759760 (12:106340405 T>C), RS1000829382 (12:106316853 A>G)
Disease associations
OMIM: gene MIM:619889 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| schizophrenia | No Known Disease Relationship | Unknown |
Mondo (1): schizophrenia (MONDO:0005090)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001635_2 | Tourette syndrome | 6.000000e-06 |
| GCST010002_222 | Refractive error | 1.000000e-12 |
| GCST010703_94 | Brain morphology (MOSTest) | 6.000000e-52 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004346 | neuroimaging measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | increases expression, affects cotreatment | 2 |
| sodium arsenite | decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation | 2 |
| Nickel | decreases expression | 2 |
| Oxygen | decreases reaction, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| 1-cyclopropyl-4-(4-((5-methyl-3-(3-(4-(trifluoromethoxy)phenyl)-1,2,4-oxadiazol-5-yl)-1H-pyrazol-1-yl)methyl)pyridin-2-yl)piperazine | increases expression, decreases reaction | 1 |
| GSK-J4 | increases expression | 1 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| beauvericin | affects cotreatment, decreases expression | 1 |
| alpha phellandrene | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| nickel chloride | increases expression | 1 |
| lei gong teng | increases expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| pentanal | decreases expression | 1 |
| phenethyl isothiocyanate | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| enniatins | affects cotreatment, decreases expression | 1 |
| nutlin 3 | increases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: schizophrenia