TEDC2-AS1

Summary

TEDC2-AS1 (TEDC2 antisense RNA 1, HGNC:55403) is a long non-coding RNA gene on chromosome 16p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55403
Approved symbol	TEDC2-AS1
Name	TEDC2 antisense RNA 1
Location	16p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259895
Ensembl biotype	lncRNA
Entrez	729652
RNAcentral	URS00002E8BB0 — lncRNA, 3264 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000563775

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563775 — 1 exons

Exon	Start	End
ENSE00002575786	2464950	2468213

Expression profiles

Bgee: expression breadth broad, 60 present calls, max score 69.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0608 / max 12.1835, expressed in 22 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
155929	0.0608	22

Top tissues by expression

162 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	69.76	silver quality
ganglionic eminence	UBERON:0004023	56.72	silver quality
stromal cell of endometrium	CL:0002255	53.46	silver quality
hindlimb stylopod muscle	UBERON:0004252	48.37	silver quality
prefrontal cortex	UBERON:0000451	47.63	silver quality
cortex of kidney	UBERON:0001225	47.25	gold quality
gastrocnemius	UBERON:0001388	46.53	gold quality
liver	UBERON:0002107	45.46	gold quality
right lobe of liver	UBERON:0001114	45.23	silver quality
amniotic fluid	UBERON:0000173	44.79	gold quality
primary visual cortex	UBERON:0002436	43.86	silver quality
cerebellar cortex	UBERON:0002129	43.60	silver quality
adult mammalian kidney	UBERON:0000082	43.48	silver quality
cerebellar hemisphere	UBERON:0002245	43.37	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
kidney	UBERON:0002113	43.36	gold quality
lower lobe of lung	UBERON:0008949	43.01	silver quality
skin of leg	UBERON:0001511	42.93	silver quality
body of uterus	UBERON:0009853	42.88	silver quality
Brodmann (1909) area 9	UBERON:0013540	42.83	silver quality
occipital lobe	UBERON:0002021	42.76	silver quality
frontal cortex	UBERON:0001870	42.73	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
neocortex	UBERON:0001950	42.56	silver quality
right hemisphere of cerebellum	UBERON:0014890	42.48	silver quality
tibial artery	UBERON:0007610	42.39	silver quality
gall bladder	UBERON:0002110	42.19	silver quality
right testis	UBERON:0004534	42.03	gold quality
muscle tissue	UBERON:0002385	41.99	gold quality
lymph node	UBERON:0000029	41.87	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.