TEX10
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Also known as FLJ20287bA208F1.2Ipi1
Summary
TEX10 (testis expressed 10, HGNC:25988) is a protein-coding gene on chromosome 9q31.1, encoding Testis-expressed protein 10 (Q9NXF1). Functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMC complex is recruited to ZNF148 by methylated CHTOP, leading to desumoylation of ZNF148 and subsequent transactivation of ZNF148 target genes. It is a selective cancer dependency (DepMap: 83.9% of cell lines).
Located in mitochondrion and nucleoplasm. Part of MLL1 complex.
Source: NCBI Gene 54881 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 112 total
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 83.9% of screened cell lines
- MANE Select transcript:
NM_017746
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25988 |
| Approved symbol | TEX10 |
| Name | testis expressed 10 |
| Location | 9q31.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ20287, bA208F1.2, Ipi1 |
| Ensembl gene | ENSG00000136891 |
| Ensembl biotype | protein_coding |
| OMIM | 616717 |
| Entrez | 54881 |
Gene structure
Transcript identifiers
Ensembl transcripts: 21 — 20 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000374902, ENST00000429235, ENST00000477648, ENST00000535814, ENST00000886294, ENST00000886295, ENST00000886296, ENST00000886297, ENST00000886298, ENST00000911375, ENST00000911376, ENST00000911377, ENST00000911378, ENST00000911379, ENST00000911380, ENST00000911381, ENST00000911382, ENST00000911383, ENST00000911384, ENST00000911385, ENST00000969642
RefSeq mRNA: 2 — MANE Select: NM_017746
NM_001161584, NM_017746
CCDS: CCDS55330, CCDS6748
Canonical transcript exons
ENST00000374902 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000805782 | 100303632 | 100303842 |
| ENSE00000805783 | 100308500 | 100308681 |
| ENSE00000805784 | 100310299 | 100310379 |
| ENSE00000805785 | 100320265 | 100320398 |
| ENSE00000805786 | 100321683 | 100321771 |
| ENSE00000805787 | 100326302 | 100326479 |
| ENSE00000805788 | 100327787 | 100327962 |
| ENSE00000805789 | 100329140 | 100329275 |
| ENSE00000805790 | 100329931 | 100330169 |
| ENSE00001090744 | 100340257 | 100340369 |
| ENSE00001465095 | 100349184 | 100349372 |
| ENSE00001903289 | 100352772 | 100352942 |
| ENSE00001954602 | 100302084 | 100302304 |
| ENSE00003465854 | 100346694 | 100347406 |
| ENSE00003654148 | 100346072 | 100346315 |
Expression profiles
Bgee: expression breadth ubiquitous, 255 present calls, max score 92.01.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 22.8468 / max 301.7918, expressed in 1805 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 101728 | 16.9111 | 1799 |
| 101727 | 5.7555 | 1653 |
| 101729 | 0.1802 | 49 |
Top tissues by expression
273 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ventricular zone | UBERON:0003053 | 92.01 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 91.00 | gold quality |
| ganglionic eminence | UBERON:0004023 | 90.81 | gold quality |
| embryo | UBERON:0000922 | 90.57 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 89.95 | gold quality |
| cortical plate | UBERON:0005343 | 89.77 | gold quality |
| sperm | CL:0000019 | 88.41 | silver quality |
| calcaneal tendon | UBERON:0003701 | 88.31 | gold quality |
| cartilage tissue | UBERON:0002418 | 87.53 | gold quality |
| endothelial cell | CL:0000115 | 87.47 | gold quality |
| adrenal tissue | UBERON:0018303 | 87.02 | gold quality |
| gastrocnemius | UBERON:0001388 | 86.30 | gold quality |
| right testis | UBERON:0004534 | 86.15 | gold quality |
| placenta | UBERON:0001987 | 86.09 | gold quality |
| right ovary | UBERON:0002118 | 86.04 | gold quality |
| male germ cell | CL:0000015 | 86.03 | silver quality |
| testis | UBERON:0000473 | 85.95 | gold quality |
| muscle of leg | UBERON:0001383 | 85.75 | gold quality |
| left ovary | UBERON:0002119 | 85.66 | gold quality |
| tibia | UBERON:0000979 | 85.62 | gold quality |
| tibialis anterior | UBERON:0001385 | 85.45 | gold quality |
| left testis | UBERON:0004533 | 85.44 | gold quality |
| body of uterus | UBERON:0009853 | 85.18 | gold quality |
| ovary | UBERON:0000992 | 85.07 | gold quality |
| stromal cell of endometrium | CL:0002255 | 84.89 | gold quality |
| skin of leg | UBERON:0001511 | 84.84 | gold quality |
| skin of abdomen | UBERON:0001416 | 84.77 | gold quality |
| ectocervix | UBERON:0012249 | 84.66 | gold quality |
| secondary oocyte | CL:0000655 | 84.22 | gold quality |
| left uterine tube | UBERON:0001303 | 84.16 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.10 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting TEX10, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-302B-5P | 99.50 | 69.49 | 1857 |
| HSA-MIR-302D-5P | 99.50 | 69.34 | 1863 |
| HSA-MIR-676-5P | 98.49 | 68.87 | 1492 |
| HSA-MIR-4662A-3P | 97.02 | 67.77 | 941 |
| HSA-MIR-3156-5P | 96.93 | 67.36 | 800 |
| HSA-MIR-576-3P | 96.14 | 65.63 | 773 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 83.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 9)
- These data define the PELP1-TEX10-WDR18 complex as a regulator of ribosome biogenesis and suggests that its SUMO-controlled distribution coordinates the rate of ribosome formation. (PMID:21326211)
- Recruitment of the protein complex 5FMC to Zbp-89, a zinc-finger transcription factor, affects its sumoylation status and transactivation potential.[5FMC] (PMID:22872859)
- Data suggest that TEX101 is a cancer-related protein and may be useful as a marker for prognosis/diagnosis of and neck squamous cell carcinomas (HNSCC). (PMID:23481573)
- Tex10 is a core component of the pluripotency network. (PMID:25936917)
- Tex10 plays a potent carcinogenic role in hepatocellular carcinoma tumorigenesis by maintaining cancer stem cell properties through activation of the STAT3 signaling pathway and promoting chemo-resistance. (PMID:30045663)
- Elevated expression of TEX10 was positively associated with malignancy and with epithelialmesenchymal transition (EMT)associated mesenchymal markers in human esophageal squamous cell carcinoma (ESCC) specimens. Study revealed that TEX10 promotes stem celllike features and plays an essential role in regulating EMT via the activation of Wnt/betacatenin signaling in ESCC. (PMID:31638260)
- LncRNA GATA3AS1miR30b5pTex10 axis modulates tumorigenesis in pancreatic cancer. (PMID:33760161)
- TEX10 Promotes the Tumorigenesis and Radiotherapy Resistance of Urinary Bladder Carcinoma by Stabilizing XRCC6. (PMID:34966825)
- LncRNA RSU1P2-microRNA let-7a-Testis-Expressed Protein 10 axis modulates tumorigenesis and cancer stem cell-like properties in liver cancer. (PMID:35156514)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tex10 | ENSDARG00000055885 |
| mus_musculus | Tex10 | ENSMUSG00000028345 |
| rattus_norvegicus | Tex10 | ENSRNOG00000008618 |
| drosophila_melanogaster | CG1575 | FBGN0029999 |
| caenorhabditis_elegans | WBGENE00012977 |
Paralogs (3): RMDN2 (ENSG00000115841), RMDN3 (ENSG00000137824), RMDN1 (ENSG00000176623)
Protein
Protein identifiers
Testis-expressed protein 10 — Q9NXF1 (reviewed: Q9NXF1)
All UniProt accessions (2): A0A0A0MSR3, Q9NXF1
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a component of the Five Friends of Methylated CHTOP (5FMC) complex; the 5FMC complex is recruited to ZNF148 by methylated CHTOP, leading to desumoylation of ZNF148 and subsequent transactivation of ZNF148 target genes. Component of the PELP1 complex involved in the nucleolar steps of 28S rRNA maturation and the subsequent nucleoplasmic transit of the pre-60S ribosomal subunit.
Subunit / interactions. Component of some MLL1/MLL complex, at least composed of the core components KMT2A/MLL1, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components BACC1, CHD8, E2F6, HSP70, INO80C, KANSL1, LAS1L, MAX, MCRS1, MGA, KAT8/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10. Component of the 5FMC complex, at least composed of PELP1, LAS1L, TEX10, WDR18 and SENP3; the complex interacts with methylated CHTOP and ZNF148. Component of the PELP1 complex, composed of at least PELP1, TEX10 and WDR18. The complex interacts with pre-60S ribosome particles.
Subcellular location. Nucleus. Nucleoplasm. Cytoplasm. Nucleolus.
Similarity. Belongs to the IPI1/TEX10 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NXF1-1 | 1 | yes |
| Q9NXF1-2 | 2 |
RefSeq proteins (2): NP_001155056, NP_060216* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR021133 | HEAT_type_2 | Repeat |
| IPR024679 | Ipi1_N | Domain |
| IPR057949 | TPR_TEX10 | Domain |
Pfam: PF12333, PF25781
UniProt features (9 total): sequence conflict 4, splice variant 2, chain 1, repeat 1, modified residue 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8FL3 | ELECTRON MICROSCOPY | 2.53 |
| 8FL2 | ELECTRON MICROSCOPY | 2.67 |
| 8FL4 | ELECTRON MICROSCOPY | 2.89 |
| 9DUM | ELECTRON MICROSCOPY | 3.56 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NXF1-F1 | 80.04 | 0.46 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 29
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-6791226 | Major pathway of rRNA processing in the nucleolus and cytosol |
| R-HSA-72312 | rRNA processing |
| R-HSA-8868773 | rRNA processing in the nucleus and cytosol |
| R-HSA-8953854 | Metabolism of RNA |
MSigDB gene sets: 130 (showing top):
GOBP_RIBOSOME_BIOGENESIS, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1, GOBP_MATURATION_OF_5_8S_RRNA_FROM_TRICISTRONIC_RRNA_TRANSCRIPT_SSU_RRNA_5_8S_RRNA_LSU_RRNA, GOBP_MATURATION_OF_LSU_RRNA, GOBP_MATURATION_OF_5_8S_RRNA, GRYDER_PAX3FOXO1_ENHANCERS_IN_TADS, GOBP_RIBONUCLEOPROTEIN_COMPLEX_BIOGENESIS, GOBP_RIBOSOMAL_LARGE_SUBUNIT_BIOGENESIS, REACTOME_METABOLISM_OF_RNA, MULLIGHAN_MLL_SIGNATURE_2_DN, GOCC_TRANSFERASE_COMPLEX, GOCC_HISTONE_METHYLTRANSFERASE_COMPLEX, GOCC_MLL1_2_COMPLEX, GOCC_METHYLTRANSFERASE_COMPLEX, GOCC_NUCLEOLUS
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (6): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), mitochondrion (GO:0005739), MLL1 complex (GO:0071339), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| rRNA processing in the nucleus and cytosol | 1 |
| Metabolism of RNA | 1 |
| rRNA processing | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| intracellular membrane-bounded organelle | 2 |
| nuclear lumen | 2 |
| cellular anatomical structure | 2 |
| binding | 1 |
| intracellular membraneless organelle | 1 |
| cytoplasm | 1 |
| MLL1/2 complex | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
1996 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TEX10 | WDR18 | Q9BV38 | 993 |
| TEX10 | PELP1 | Q8IZL8 | 983 |
| TEX10 | LAS1L | Q9Y4W2 | 924 |
| TEX10 | SENP3 | Q9H4L4 | 909 |
| TEX10 | SOX2 | P48431 | 780 |
| TEX10 | NOL9 | Q5SY16 | 678 |
| TEX10 | GNL2 | Q13823 | 563 |
| TEX10 | CHTOP | Q9Y3Y2 | 557 |
| TEX10 | EP300 | Q09472 | 536 |
| TEX10 | MDN1 | Q9NU22 | 532 |
| TEX10 | PES1 | O00541 | 524 |
| TEX10 | NVL | O15381 | 504 |
| TEX10 | NANOG | Q9H9S0 | 498 |
| TEX10 | POU5F1 | P31359 | 495 |
| TEX10 | TET1 | Q8NFU7 | 494 |
IntAct
156 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PELP1 | WDR18 | psi-mi:“MI:0914”(association) | 0.900 |
| PELP1 | WDR18 | psi-mi:“MI:0915”(physical association) | 0.900 |
| SENP3 | NPM1 | psi-mi:“MI:0914”(association) | 0.780 |
| PHF19 | EED | psi-mi:“MI:0914”(association) | 0.730 |
| TEX10 | PELP1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| WDR18 | TEX10 | psi-mi:“MI:0915”(physical association) | 0.670 |
| NEUROG3 | GXYLT2 | psi-mi:“MI:0914”(association) | 0.640 |
| H2BC1 | PPM1G | psi-mi:“MI:0914”(association) | 0.640 |
| SLX4 | ERCC1 | psi-mi:“MI:0914”(association) | 0.640 |
| NOL9 | SENP3 | psi-mi:“MI:0914”(association) | 0.640 |
| TEX10 | SENP3 | psi-mi:“MI:0915”(physical association) | 0.620 |
| NPM1 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.610 |
| TEX10 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| H1-4 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.530 |
| RPS2 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| RSBN1 | SETD1A | psi-mi:“MI:0914”(association) | 0.530 |
| MACROH2A2 | PPM1G | psi-mi:“MI:0914”(association) | 0.530 |
| ZBTB48 | ZBTB24 | psi-mi:“MI:0914”(association) | 0.530 |
| PDGFB | DKC1 | psi-mi:“MI:0914”(association) | 0.530 |
| WDR18 | NOL9 | psi-mi:“MI:0914”(association) | 0.530 |
| MAGEB2 | POLRMT | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (266): TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Reconstituted Complex), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), TEX10 (Affinity Capture-MS), GNL3 (Co-fractionation), NOL9 (Co-fractionation), PELP1 (Co-fractionation), SENP3 (Co-fractionation), TEX10 (Co-fractionation)
ESM2 similar proteins: A0JM49, A2AKG8, B0V0U5, B1AUR6, C5J7W8, E1BGH8, E1C231, E1C2Z0, E7FGT5, E7FH61, E9Q3L2, F6S215, O08662, O60287, O94822, P42356, P57678, P78527, P97313, Q13315, Q13535, Q14146, Q1RLU1, Q2TAW0, Q3TQQ9, Q3URQ0, Q571H0, Q5RDK1, Q5VW36, Q5WNI9, Q5XI94, Q5ZM41, Q62388, Q6A009, Q6DFV1, Q6PQD5, Q6ZRQ5, Q7SY48, Q86XI2, Q8BKX6
Diamond homologs: A1CMX6, A1DL11, A4RBW8, A7EI93, O94718, P0CT45, Q2UU13, Q3URQ0, Q4WCP8, Q59JU3, Q5ASR2, Q5RDK1, Q5ZM41, Q7SFQ6, Q803M3, Q9NXF1, A3M0B1, A5DKN0, A5E181, A6ZSZ4, P38803, Q6BLC4, Q6CJZ2, Q6FK47, Q759I2
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TEX10 | “form complex” | “Rix1 complex” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 178 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Eukaryotic Translation Initiation | 5 | 11.3× | 2e-03 |
| Cap-dependent Translation Initiation | 5 | 11.3× | 2e-03 |
| SARS-CoV-1 modulates host translation machinery | 5 | 11.3× | 2e-03 |
| ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA | 12 | 10.3× | 3e-07 |
| SRP-dependent cotranslational protein targeting to membrane | 14 | 10.2× | 3e-08 |
| Peptide chain elongation | 11 | 10.2× | 1e-06 |
| Viral mRNA Translation | 11 | 10.2× | 1e-06 |
| Eukaryotic Translation Elongation | 5 | 10.2× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 14 | 15.8× | 2e-10 |
| rRNA processing | 14 | 12.1× | 5e-09 |
| ribosomal small subunit biogenesis | 8 | 11.1× | 2e-04 |
| heterochromatin formation | 6 | 9.3× | 9e-03 |
| translation | 12 | 7.5× | 2e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
112 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 87 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2349 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:100303629:TA:T | donor_loss | 1.0000 |
| 9:100303630:A:AC | donor_gain | 1.0000 |
| 9:100303630:A:AG | donor_loss | 1.0000 |
| 9:100303630:AC:A | donor_gain | 1.0000 |
| 9:100303631:C:CC | donor_gain | 1.0000 |
| 9:100303631:CC:C | donor_gain | 1.0000 |
| 9:100303631:CCGTG:C | donor_gain | 1.0000 |
| 9:100303838:TGTCC:T | acceptor_gain | 1.0000 |
| 9:100303839:GTCC:G | acceptor_gain | 1.0000 |
| 9:100303840:TCC:T | acceptor_gain | 1.0000 |
| 9:100303841:CC:C | acceptor_gain | 1.0000 |
| 9:100303841:CCC:C | acceptor_gain | 1.0000 |
| 9:100303842:CC:C | acceptor_gain | 1.0000 |
| 9:100303843:C:CC | acceptor_gain | 1.0000 |
| 9:100320259:TATTA:T | donor_loss | 1.0000 |
| 9:100320260:ATTAC:A | donor_loss | 1.0000 |
| 9:100320261:TTACC:T | donor_loss | 1.0000 |
| 9:100320262:TAC:T | donor_loss | 1.0000 |
| 9:100320263:A:AT | donor_loss | 1.0000 |
| 9:100320264:CCT:C | donor_gain | 1.0000 |
| 9:100320397:CC:C | acceptor_gain | 1.0000 |
| 9:100320398:CC:C | acceptor_gain | 1.0000 |
| 9:100320422:CAATT:C | acceptor_gain | 1.0000 |
| 9:100322352:C:A | donor_gain | 1.0000 |
| 9:100326375:A:C | donor_gain | 1.0000 |
| 9:100327964:T:C | acceptor_gain | 1.0000 |
| 9:100346088:T:TA | donor_gain | 1.0000 |
| 9:100346311:GATAC:G | acceptor_gain | 1.0000 |
| 9:100346312:ATAC:A | acceptor_gain | 1.0000 |
| 9:100346313:TAC:T | acceptor_gain | 1.0000 |
AlphaMissense
6080 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:100347153:A:G | L145P | 1.000 |
| 9:100327937:A:G | W551R | 0.999 |
| 9:100327937:A:T | W551R | 0.999 |
| 9:100347021:A:G | L189P | 0.999 |
| 9:100347144:G:T | A148D | 0.999 |
| 9:100347145:C:G | A148P | 0.999 |
| 9:100347345:A:G | L81P | 0.999 |
| 9:100346226:A:G | L328P | 0.998 |
| 9:100346883:A:G | L235P | 0.998 |
| 9:100346895:A:G | L231P | 0.998 |
| 9:100347109:A:G | S160P | 0.998 |
| 9:100347141:A:C | M149R | 0.998 |
| 9:100347159:G:T | A143D | 0.998 |
| 9:100347243:C:G | R115P | 0.998 |
| 9:100347336:A:G | L84P | 0.998 |
| 9:100302274:A:G | W903R | 0.997 |
| 9:100302274:A:T | W903R | 0.997 |
| 9:100347141:A:T | M149K | 0.997 |
| 9:100347157:G:C | H144D | 0.997 |
| 9:100347357:G:T | A77D | 0.997 |
| 9:100347358:C:G | A77P | 0.997 |
| 9:100347365:T:A | K74N | 0.997 |
| 9:100347365:T:G | K74N | 0.997 |
| 9:100346215:A:G | W332R | 0.996 |
| 9:100346215:A:T | W332R | 0.996 |
| 9:100346907:A:T | V227D | 0.996 |
| 9:100346920:A:G | W223R | 0.996 |
| 9:100346920:A:T | W223R | 0.996 |
| 9:100347084:A:G | L168P | 0.996 |
| 9:100347087:A:G | L167P | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000103894 (9:100322904 C>T), RS1000124424 (9:100316031 A>G), RS1000232457 (9:100322558 T>A), RS1000241184 (9:100316267 C>T), RS1000303473 (9:100328698 T>C), RS1000351220 (9:100309960 A>G), RS1000360522 (9:100353576 C>A,T), RS1000394776 (9:100353172 T>C), RS1000411008 (9:100303242 GA>G), RS1000413550 (9:100322702 A>AC), RS1000435319 (9:100335492 C>T), RS1000511575 (9:100317221 T>C), RS1000543201 (9:100342718 A>C), RS1000604146 (9:100349923 G>A), RS1000733517 (9:100310604 A>G)
Disease associations
OMIM: gene MIM:616717 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010988_401 | Adult body size | 3.000000e-13 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067270 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
5 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs10124893 | Efficacy | 3 | duloxetine | Major Depressive Disorder |
| rs10989064 | Efficacy | 3 | duloxetine | Major Depressive Disorder |
| rs6479008 | Efficacy | 3 | duloxetine | Major Depressive Disorder |
| rs7035619 | Efficacy | 3 | duloxetine | Major Depressive Disorder |
| rs7472 | Efficacy | 3 | duloxetine | Major Depressive Disorder |
PharmGKB variants
5 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs10124893 | TEX10 | 3 | 0.00 | 1 | duloxetine |
| rs10989064 | TEX10 | 3 | 0.00 | 1 | duloxetine |
| rs6479008 | TEX10 | 3 | 0.00 | 1 | duloxetine |
| rs7035619 | TEX10 | 3 | 0.00 | 1 | duloxetine |
| rs7472 | INVS, TEX10 | 3 | 0.00 | 1 | duloxetine |
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, affects cotreatment | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Cyclosporine | increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| sodium arsenite | decreases expression, increases abundance | 1 |
| cobaltous chloride | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| abrine | increases expression | 1 |
| jinfukang | decreases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Atrazine | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Estradiol | increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Potassium Chloride | decreases response to substance, increases expression | 1 |
| Ribonucleotides | affects binding | 1 |
| Silicon Dioxide | increases expression | 1 |
| Dronabinol | decreases response to substance, increases expression | 1 |
| Thimerosal | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652993 | Binding | Binding affinity to human TEX10 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.