TGFB3
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Summary
TGFB3 (transforming growth factor beta 3, HGNC:11769) is a protein-coding gene on chromosome 14q24.3, encoding Transforming growth factor beta-3 proprotein (P10600). Transforming growth factor beta-3 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-3 (TGF-beta-3) chains, which constitute the regulatory and active subunit of TGF-beta-3, respectively.
This gene encodes a secreted ligand of the TGF-beta (transforming growth factor-beta) superfamily of proteins. Ligands of this family bind various TGF-beta receptors leading to recruitment and activation of SMAD family transcription factors that regulate gene expression. The encoded preproprotein is proteolytically processed to generate a latency-associated peptide (LAP) and a mature peptide, and is found in either a latent form composed of a mature peptide homodimer, a LAP homodimer, and a latent TGF-beta binding protein, or in an active form consisting solely of the mature peptide homodimer. The mature peptide may also form heterodimers with other TGF-beta family members. This protein is involved in embryogenesis and cell differentiation, and may play a role in wound healing. Mutations in this gene are a cause of aortic aneurysms and dissections, as well as familial arrhythmogenic right ventricular dysplasia 1.
Source: NCBI Gene 7043 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Rienhoff syndrome (Definitive, GenCC) — +4 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 729 total — 45 pathogenic, 31 likely-pathogenic
- Phenotypes (HPO): 122
- Druggable target: yes
- MANE Select transcript:
NM_003239
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11769 |
| Approved symbol | TGFB3 |
| Name | transforming growth factor beta 3 |
| Location | 14q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000119699 |
| Ensembl biotype | protein_coding |
| OMIM | 190230 |
| Entrez | 7043 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 15 protein_coding, 2 protein_coding_CDS_not_defined, 1 retained_intron
ENST00000238682, ENST00000554980, ENST00000555193, ENST00000556285, ENST00000556507, ENST00000556674, ENST00000557493, ENST00000858792, ENST00000858793, ENST00000858794, ENST00000858795, ENST00000858796, ENST00000858797, ENST00000911430, ENST00000964914, ENST00000964915, ENST00000964916, ENST00000964917
RefSeq mRNA: 3 — MANE Select: NM_003239
NM_001329938, NM_001329939, NM_003239
CCDS: CCDS86415, CCDS9846
Canonical transcript exons
ENST00000238682 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000808429 | 75971126 | 75971255 |
| ENSE00000808430 | 75971555 | 75971718 |
| ENSE00002526160 | 75958097 | 75959345 |
| ENSE00002536640 | 75980542 | 75981995 |
| ENSE00003612657 | 75963316 | 75963487 |
| ENSE00003637614 | 75965588 | 75965695 |
| ENSE00003641083 | 75960923 | 75961076 |
Expression profiles
Bgee: expression breadth ubiquitous, 244 present calls, max score 96.03.
FANTOM5 (CAGE): breadth broad, TPM avg 3.4427 / max 131.8155, expressed in 888 samples.
FANTOM5 promoters (13 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 144157 | 0.9178 | 297 |
| 144159 | 0.7438 | 328 |
| 144156 | 0.4644 | 225 |
| 144151 | 0.2156 | 88 |
| 144155 | 0.2102 | 107 |
| 144152 | 0.2008 | 79 |
| 144154 | 0.2006 | 82 |
| 144158 | 0.1621 | 65 |
| 144153 | 0.1104 | 46 |
| 144149 | 0.0841 | 19 |
Top tissues by expression
277 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| saphenous vein | UBERON:0007318 | 96.03 | gold quality |
| endocervix | UBERON:0000458 | 95.69 | gold quality |
| gall bladder | UBERON:0002110 | 94.28 | gold quality |
| prostate gland | UBERON:0002367 | 93.49 | gold quality |
| cartilage tissue | UBERON:0002418 | 92.88 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 92.62 | gold quality |
| body of pancreas | UBERON:0001150 | 92.56 | gold quality |
| periodontal ligament | UBERON:0008266 | 92.24 | gold quality |
| body of uterus | UBERON:0009853 | 91.96 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 91.69 | gold quality |
| ascending aorta | UBERON:0001496 | 91.56 | gold quality |
| thoracic aorta | UBERON:0001515 | 91.31 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 91.09 | gold quality |
| vena cava | UBERON:0004087 | 91.02 | gold quality |
| right atrium auricular region | UBERON:0006631 | 90.98 | gold quality |
| omental fat pad | UBERON:0010414 | 90.76 | gold quality |
| gastrocnemius | UBERON:0001388 | 90.75 | gold quality |
| peritoneum | UBERON:0002358 | 90.73 | gold quality |
| gluteal muscle | UBERON:0002000 | 90.70 | gold quality |
| aorta | UBERON:0000947 | 90.59 | gold quality |
| left coronary artery | UBERON:0001626 | 90.55 | gold quality |
| spinal cord | UBERON:0002240 | 90.52 | gold quality |
| cardiac atrium | UBERON:0002081 | 90.30 | gold quality |
| coronary artery | UBERON:0001621 | 90.16 | gold quality |
| popliteal artery | UBERON:0002250 | 90.13 | gold quality |
| tibial artery | UBERON:0007610 | 90.11 | gold quality |
| muscle of leg | UBERON:0001383 | 89.76 | gold quality |
| pancreas | UBERON:0001264 | 89.59 | gold quality |
| amygdala | UBERON:0001876 | 89.43 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 89.36 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.60 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| SERPINE1 | Activation |
Upstream regulators (CollecTRI, top): ARX, ATF2, CREB1, ESR1, ESR2, FOSL2, FOXE1, GLI3, HIF1A, JUN, MSX2, MYC, PAX1, PRRX1, SMAD3, SNAI1, SNAI2, TFAP2A
miRNA regulators (miRDB)
81 targeting TGFB3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-6755-5P | 99.95 | 65.59 | 464 |
| HSA-MIR-548AB | 99.95 | 71.31 | 3488 |
| HSA-MIR-548I | 99.94 | 71.25 | 3481 |
| HSA-MIR-381-3P | 99.93 | 71.87 | 2854 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-300 | 99.92 | 71.76 | 2856 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-629-3P | 99.85 | 67.99 | 1875 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
Literature-anchored findings (GeneRIF, showing 40)
- PAI-1 gene activation by TNF-alpha apparently is yet to be defined for the location of the response element and/or the signaling pathway, while TGF-beta is the most important cytokine for PAI-1 transcriptional activation through its 5’ proximal promoter. (PMID:11776328)
- crystal structure of the human TbetaR2 ectodomain–TGF-beta3 complex (PMID:11850637)
- downregulation of TGF-beta 3 expression found in pre-eclamptic umbilical cord may contribute to the abnormal structure and mechanical properties seen in these pathological umbilical cords (PMID:11969342)
- TGF-beta1, TGF-beta2 and TGF-beta3 isoforms are produced by chondrosarcomas and could have a potential role as autocrine growth stimulators in these neoplasms (PMID:12021923)
- present in diabetic foot ulcer (PMID:12060054)
- TGFbeta3 may have a role in mediating progesterone- and progestogen-induced endometrial differentiation (PMID:12168782)
- TGFbeta3 regulates GM-CSF induced human myelopoiesis (PMID:12171249)
- determination of the importance of conformational entropy in the interaction of TGF-beta3 with the receptors (PMID:12221089)
- children with active celiac disease have an altered expression of TGF-beta1 and TGF-beta3 in the small intestine (PMID:12410804)
- The role of TGF-beta1 and -beta3 in generating a high TIFP was investigated in xenografted experimental anaplastic thyroid carcinoma (ATC) derived from the human ATC cell line (PMID:12432546)
- investigated TGF-beta 1, -beta 2, and -beta 3 latency-associated peptides (LAP)expression in sound and carious human teeth (PMID:12489185)
- TGF-beta3 expression in peritoneal fibroblasts was not affected by hypoxia or TGF-beta1 stimulation (PMID:12607775)
- mutations make a contribution to clefts in South American populations (PMID:12651933)
- positively associated with cleft lip and/or palate with hypodontia outside the cleft region (PMID:12733956)
- Glucocorticoids significantly inhibited TGF-beta1 and TGF-beta2 production and reduced expression of the up-regulated TGF-beta1 and TGF-beta2 mRNA induced by exogenous TGF-beta1, -beta2, or -beta3 (PMID:12772773)
- All three TGF-beta isoforms have fibrogenic effects on renal cells. TGF-beta2 and TGF-beta3 effects may be partially mediated by TGF-beta1. Blockade of all isoforms together may yield best therapeutic effect in reducing renal fibrosis. (PMID:12911534)
- NMR analysis of the extracellular domain of the human TGFbeta type II receptor in complex with monomeric TGFbeta3 (PMID:15017149)
- regulation of TGF-beta3 promoter activity by HIF-1 represents a mechanism for trophoblast differentiation during hypoxia. (PMID:15155569)
- We identified TGFbeta3 as the disease gene involved in ARVD1. (PMID:15639475)
- Human TGF-beta2 but not human TGF-beta1, or -beta3 promotes cardiac myocyte differentiation from mouse ES cells. (PMID:15896309)
- No association was found between TGF-beta3 gene polymorphisms essential hypertension in Chinese. (PMID:15924806)
- TGF-beta 3 may promote endometrial tissue repair through the inhibition of the proliferation, expansion, and migration of endometrial stromal cells, and through stimulation of contraction of the collagen gel matrix by these cells. (PMID:16210002)
- Depletion of TGFbeta3 from serum converts serum to a plasmalike reagent. (PMID:16549496)
- Hunchback sequence binding protein may function as a TGF-beta3 gene transcriptional regulator and may be expressed in a cell type-specific manner. (PMID:16781676)
- CD24 regulates E-cadherin and TGF-beta3 expression in cultured oral epithelial cells (PMID:16930538)
- Altered crosstalk between RA, GABAergic, and TGF-beta signaling systems could be involved in human cleft palate fibroblast phenotype. (PMID:17225872)
- BMP-2, TGF-beta2, and TGF-beta3 are involved in bone formation in heterotopic ossifications. (PMID:17401695)
- TGF-beta3 may play a role as regulator of variety of cellular events during HELLP syndrome. High local expression may be responsible for remodeling of the placental structure resulting in dysfunction of maternal-fetal circulation. (PMID:17671384)
- collagen I induces EMT in lung cancer cells by activating autocrine TGF-beta3 signaling. Epidermal growth factor also seems to initiate EMT via a TGF-dependent mechanism. (PMID:17673689)
- TGF-beta2 and -beta3 are differentially expressed during the menstrual cycle and regulated by progesterone in epithelial vs stromal cells. (PMID:18039789)
- There is a significantly elevated concentration of TGF-beta3 in PE eyes (PMID:18049952)
- TGF-beta 3 is closely related to mineral maturation matrix in human developing teeth (PMID:18078367)
- TGF-beta 3 was detected from the canalisation stage of the salivary gland, being weakly expressed on ductal cells, and it was the only factor detected on myoepithelial cells. (PMID:18080134)
- oxygen regulates the placental expression of endoglin via TGF-beta 3 (PMID:18156205)
- TGF-beta complexes assemble cooperatively through recruitment of the low-affinity (type I) receptor by the ligand-bound high-affinity (type II) pair. (PMID:18243111)
- Data support the involvement of TGFB3 in the development of oral clefts in patients among 204 triads of central European origin. (PMID:18480962)
- study found different expression of the TGF-beta1, -2 and -3 isoforms in the human corneal epithelium; such differential expression of TGF-betas suggests that each of them may play a specific role in corneal tissue (PMID:18498721)
- the TGF-beta1-2-3/Smad3 pathway has a role in mediating ovarian oncogenesis by enhancing metastatic potential (PMID:18505915)
- Snail and Slug promote formation of beta-catenin-T-cell factor (TCF)-4 transcription complexes that bind to the promoter of the TGF-beta3 gene to increase its transcription. (PMID:18799618)
- BMP-2 enhances TGF-beta3-mediated chondrogenesis of mesenchymal stromal cells. (PMID:18950289)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tgfb3 | ENSDARG00000019367 |
| mus_musculus | Tgfb3 | ENSMUSG00000021253 |
| rattus_norvegicus | Tgfb3 | ENSRNOG00000009867 |
Paralogs (31): TGFB2 (ENSG00000092969), BMP7 (ENSG00000101144), TGFB1 (ENSG00000105329), BMP5 (ENSG00000112175), BMP8B (ENSG00000116985), INHBA (ENSG00000122641), INHA (ENSG00000123999), BMP4 (ENSG00000125378), BMP2 (ENSG00000125845), GDF5 (ENSG00000125965), GDF1 (ENSG00000130283), BMP15 (ENSG00000130385), GDF15 (ENSG00000130513), GDF11 (ENSG00000135414), MSTN (ENSG00000138379), INHBE (ENSG00000139269), LEFTY2 (ENSG00000143768), GDF7 (ENSG00000143869), BMP3 (ENSG00000152785), BMP6 (ENSG00000153162), GDF6 (ENSG00000156466), NODAL (ENSG00000156574), INHBB (ENSG00000163083), BMP10 (ENSG00000163217), GDF9 (ENSG00000164404), INHBC (ENSG00000175189), BMP8A (ENSG00000183682), GDF3 (ENSG00000184344), LEFTY1 (ENSG00000243709), GDF2 (ENSG00000263761), GDF10 (ENSG00000266524)
Protein
Protein identifiers
Transforming growth factor beta-3 proprotein — P10600 (reviewed: P10600)
All UniProt accessions (3): P10600, A0A6Q8PGK5, A5YM40
UniProt curated annotations — full annotation on UniProt →
Function. Transforming growth factor beta-3 proprotein: Precursor of the Latency-associated peptide (LAP) and Transforming growth factor beta-3 (TGF-beta-3) chains, which constitute the regulatory and active subunit of TGF-beta-3, respectively. Required to maintain the Transforming growth factor beta-3 (TGF-beta-3) chain in a latent state during storage in extracellular matrix. Associates non-covalently with TGF-beta-3 and regulates its activation via interaction with ‘milieu molecules’, such as LTBP1 and LRRC32/GARP, that control activation of TGF-beta-3. Interaction with integrins results in distortion of the Latency-associated peptide chain and subsequent release of the active TGF-beta-3. Transforming growth factor beta-3: Multifunctional protein that regulates embryogenesis and cell differentiation and is required in various processes such as secondary palate development. Activation into mature form follows different steps: following cleavage of the proprotein in the Golgi apparatus, Latency-associated peptide (LAP) and Transforming growth factor beta-3 (TGF-beta-3) chains remain non-covalently linked rendering TGF-beta-3 inactive during storage in extracellular matrix. At the same time, LAP chain interacts with ‘milieu molecules’, such as LTBP1 and LRRC32/GARP that control activation of TGF-beta-3 and maintain it in a latent state during storage in extracellular milieus. TGF-beta-3 is released from LAP by integrins: integrin-binding results in distortion of the LAP chain and subsequent release of the active TGF-beta-3. Once activated following release of LAP, TGF-beta-3 acts by binding to TGF-beta receptors (TGFBR1 and TGFBR2), which transduce signal.
Subunit / interactions. Interacts with ASPN. Latency-associated peptide: Homodimer; disulfide-linked. Latency-associated peptide: Interacts with Transforming growth factor beta-3 (TGF-beta-3) chain; interaction is non-covalent and maintains (TGF-beta-3) in a latent state. Latency-associated peptide: Interacts with LRRC32/GARP; leading to regulate activation of TGF-beta-3 and promote epithelial fusion during palate development. Latency-associated peptide: Interacts (via cell attachment site) with integrins, leading to release of the active TGF-beta-3. Transforming growth factor beta-3: Homodimer; disulfide-linked. Transforming growth factor beta-3: Interacts with TGF-beta receptors (TGFBR1 and TGFBR2), leading to signal transduction.
Subcellular location. Secreted. Extracellular space. Extracellular matrix Secreted.
Post-translational modifications. Transforming growth factor beta-3 proprotein: The precursor proprotein is cleaved in the Golgi apparatus to form Transforming growth factor beta-3 (TGF-beta-3) and Latency-associated peptide (LAP) chains, which remain non-covalently linked, rendering TGF-beta-3 inactive. Methylated at Gln-293 by N6AMT1.
Disease relevance. Arrhythmogenic right ventricular dysplasia, familial, 1 (ARVD1) [MIM:107970] A congenital heart disease characterized by infiltration of adipose and fibrous tissue into the right ventricle and loss of myocardial cells, resulting in ventricular and supraventricular arrhythmias. The disease is caused by variants affecting the gene represented in this entry. Loeys-Dietz syndrome 5 (LDS5) [MIM:615582] A form of Loeys-Dietz syndrome, a syndrome with widespread systemic involvement characterized by arterial tortuosity and aneurysms, hypertelorism, and bifid uvula or cleft palate. LDS5 additional variable features include mitral valve disease, skeletal overgrowth, cervical spine instability, and clubfoot deformity. LDS5 patients do not manifest remarkable aortic or arterial tortuosity, and there is no strong evidence for early aortic dissection. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the TGF-beta family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P10600-1 | 1 | yes |
| P10600-2 | 2 |
RefSeq proteins (3): NP_001316867, NP_001316868, NP_003230* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001111 | TGF-b_propeptide | Domain |
| IPR001839 | TGF-b_C | Domain |
| IPR015615 | TGF-beta-like | Family |
| IPR015618 | TGFB3 | Family |
| IPR016319 | TGF-beta | Family |
| IPR017948 | TGFb_CS | Conserved_site |
| IPR029034 | Cystine-knot_cytokine | Homologous_superfamily |
Pfam: PF00019, PF00688
UniProt features (40 total): strand 13, helix 8, disulfide bond 5, glycosylation site 3, chain 2, sequence variant 2, turn 2, signal peptide 1, splice variant 1, mutagenesis site 1, short sequence motif 1, modified residue 1
Structure
Experimental structures (PDB)
11 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1TGJ | X-RAY DIFFRACTION | 2 |
| 1KTZ | X-RAY DIFFRACTION | 2.15 |
| 4UM9 | X-RAY DIFFRACTION | 2.5 |
| 8V52 | X-RAY DIFFRACTION | 2.5 |
| 8VS6 | ELECTRON MICROSCOPY | 2.73 |
| 8VSB | ELECTRON MICROSCOPY | 2.93 |
| 2PJY | X-RAY DIFFRACTION | 3 |
| 9B9F | X-RAY DIFFRACTION | 3 |
| 3EO1 | X-RAY DIFFRACTION | 3.1 |
| 1TGK | X-RAY DIFFRACTION | 3.3 |
| 9FK5 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P10600-F1 | 77.48 | 0.33 |
Antibody-complex structures (SAbDab): 2 — 3EO1, 8V52
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 293
Disulfide bonds (5): 344–409, 348–411, 377, 307–316, 315–378
Glycosylation sites (3): 74, 135, 142
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 293 | abolishes methylation by n6amt1. |
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-2129379 | Molecules associated with elastic fibres |
| R-HSA-2173789 | TGF-beta receptor signaling activates SMADs |
| R-HSA-3000178 | ECM proteoglycans |
| R-HSA-109582 | Hemostasis |
| R-HSA-1474244 | Extracellular matrix organization |
| R-HSA-1566948 | Elastic fibre formation |
| R-HSA-162582 | Signal Transduction |
| R-HSA-170834 | Signaling by TGF-beta Receptor Complex |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
| R-HSA-9006936 | Signaling by TGFB family members |
MSigDB gene sets: 787 (showing top):
GOBP_SMAD_PROTEIN_SIGNAL_TRANSDUCTION, MODULE_92, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_BODY_MORPHOGENESIS, FREAC2_01, GOBP_ACTIN_FILAMENT_BUNDLE_ORGANIZATION, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, MYOGENIN_Q6, GOBP_GLAND_MORPHOGENESIS, HNF3ALPHA_Q6, GOBP_NEGATIVE_REGULATION_OF_SMOOTH_MUSCLE_CELL_PROLIFERATION, HARRIS_HYPOXIA, GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_TO_MESENCHYMAL_TRANSITION, GOBP_SALIVARY_GLAND_DEVELOPMENT
GO Biological Process (36): response to hypoxia (GO:0001666), in utero embryonic development (GO:0001701), transforming growth factor beta receptor signaling pathway (GO:0007179), salivary gland morphogenesis (GO:0007435), heart development (GO:0007507), positive regulation of cell population proliferation (GO:0008284), negative regulation of cell population proliferation (GO:0008285), positive regulation of epithelial to mesenchymal transition (GO:0010718), negative regulation of macrophage cytokine production (GO:0010936), mammary gland development (GO:0030879), response to progesterone (GO:0032570), positive regulation of collagen biosynthetic process (GO:0032967), regulation of cell population proliferation (GO:0042127), odontogenesis (GO:0042476), uterine wall breakdown (GO:0042704), positive regulation of apoptotic process (GO:0043065), negative regulation of neuron apoptotic process (GO:0043524), cell-cell junction organization (GO:0045216), positive regulation of DNA-templated transcription (GO:0045893), positive regulation of transcription by RNA polymerase II (GO:0045944), lung alveolus development (GO:0048286), positive regulation of protein secretion (GO:0050714), positive regulation of filopodium assembly (GO:0051491), positive regulation of stress fiber assembly (GO:0051496), positive regulation of cell division (GO:0051781), face morphogenesis (GO:0060325), positive regulation of SMAD protein signal transduction (GO:0060391), secondary palate development (GO:0062009), detection of hypoxia (GO:0070483), negative regulation of vascular associated smooth muscle cell proliferation (GO:1904706), positive regulation of tight junction disassembly (GO:1905075), positive regulation of cell differentiation (GO:0045597), positive regulation of cellular component organization (GO:0051130), positive regulation of multicellular organismal process (GO:0051240), cellular response to growth factor stimulus (GO:0071363), transforming growth factor beta receptor superfamily signaling pathway (GO:0141091)
GO Molecular Function (9): type II transforming growth factor beta receptor binding (GO:0005114), cytokine activity (GO:0005125), growth factor activity (GO:0008083), type I transforming growth factor beta receptor binding (GO:0034713), type III transforming growth factor beta receptor binding (GO:0034714), identical protein binding (GO:0042802), transforming growth factor beta binding (GO:0050431), transforming growth factor beta receptor binding (GO:0005160), protein binding (GO:0005515)
GO Cellular Component (5): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), plasma membrane (GO:0005886), extracellular matrix (GO:0031012), platelet alpha granule lumen (GO:0031093)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| Extracellular matrix organization | 2 |
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Elastic fibre formation | 1 |
| Signaling by TGF-beta Receptor Complex | 1 |
| Signaling by TGFB family members | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell population proliferation | 3 |
| transforming growth factor beta receptor binding | 3 |
| regulation of cell population proliferation | 2 |
| receptor ligand activity | 2 |
| response to stress | 1 |
| response to decreased oxygen levels | 1 |
| chordate embryonic development | 1 |
| cellular response to transforming growth factor beta stimulus | 1 |
| transforming growth factor beta receptor superfamily signaling pathway | 1 |
| salivary gland development | 1 |
| gland morphogenesis | 1 |
| animal organ development | 1 |
| circulatory system development | 1 |
| positive regulation of cellular process | 1 |
| negative regulation of cellular process | 1 |
| epithelial to mesenchymal transition | 1 |
| regulation of epithelial to mesenchymal transition | 1 |
| positive regulation of cell differentiation | 1 |
| positive regulation of multicellular organismal process | 1 |
| negative regulation of cytokine production involved in immune response | 1 |
| macrophage cytokine production | 1 |
| regulation of macrophage cytokine production | 1 |
| gland development | 1 |
| response to steroid hormone | 1 |
| response to ketone | 1 |
| positive regulation of biosynthetic process | 1 |
| positive regulation of collagen metabolic process | 1 |
| collagen biosynthetic process | 1 |
| regulation of collagen biosynthetic process | 1 |
| regulation of cellular process | 1 |
| animal organ morphogenesis | 1 |
| ovulation cycle process | 1 |
| menstruation | 1 |
| apoptotic process | 1 |
| regulation of apoptotic process | 1 |
| positive regulation of programmed cell death | 1 |
| negative regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| cell junction organization | 1 |
Protein interactions and networks
STRING
2938 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TGFB3 | TGFBR1 | P36897 | 997 |
| TGFB3 | TGFBR2 | P37173 | 997 |
| TGFB3 | ENG | P17813 | 993 |
| TGFB3 | TGFBR3 | Q03167 | 989 |
| TGFB3 | THBS1 | P07996 | 886 |
| TGFB3 | TGFB1 | P01137 | 885 |
| TGFB3 | PKP2 | Q99959 | 862 |
| TGFB3 | SMAD2 | Q15796 | 857 |
| TGFB3 | SMAD3 | P84022 | 856 |
| TGFB3 | JUP | P14923 | 855 |
| TGFB3 | TMEM43 | Q9BTV4 | 855 |
| TGFB3 | LTBP1 | P22064 | 847 |
| TGFB3 | TGFB2 | P08112 | 843 |
| TGFB3 | MSX1 | P28360 | 833 |
| TGFB3 | LTBP3 | Q9NS15 | 824 |
IntAct
20 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TGFB3 | TGFBR2 | psi-mi:“MI:0407”(direct interaction) | 0.770 |
| TGFBR2 | TGFB3 | psi-mi:“MI:0407”(direct interaction) | 0.770 |
| TGFB3 | TGFBR1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| TGFB3 | TGFB3 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| ITGAV | TGFB3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TGFB3 | TGFBR3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| TGFB3 | ZMYM3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TGFB3 | LTBP4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CCL20 | TGFB3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TGFB3 | SDC4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CHMP2A | TGFB3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HTRA4 | PSMD12 | psi-mi:“MI:0914”(association) | 0.350 |
| FMR1 | TGFB3 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): TGFB3 (Reconstituted Complex), TGFBR2 (Reconstituted Complex), TGFB3 (Co-crystal Structure), ZMYM3 (Proximity Label-MS), TGFB3 (Affinity Capture-Western), TGFB3 (Affinity Capture-Western), TGFB3 (Affinity Capture-MS), TGFB3 (Co-localization), TGFB3 (Co-localization), TGFB3 (Affinity Capture-RNA), TGFB3 (Affinity Capture-Western), TGFB3 (Two-hybrid), TGFB3 (Two-hybrid), TGFB3 (Two-hybrid)
ESM2 similar proteins: A1A5X5, A4IH36, D4AB34, O93449, O95150, O97605, O97626, P04088, P04924, P09529, P10600, P15203, P16047, P17125, P17491, P27093, P36939, P36940, P41047, P42917, P48023, P50591, P50592, P59694, P59695, P63306, P63307, P63308, Q04999, Q07258, Q5UBV8, Q5XIG2, Q6PGN1, Q80WL1, Q861W5, Q8BGU2, Q8BMF8, Q8IUK8, Q8K3Y7, Q8R2Z0
Diamond homologs: A8E7N9, G5EEL5, O08717, O13048, O19006, O46564, O46576, O61643, O88959, O95393, P04088, P07713, P08476, P09529, P09534, P09858, P10600, P12643, P12645, P15203, P16176, P17125, P17491, P18075, P18331, P20722, P20863, P21214, P21274, P21275, P22003, P22004, P22444, P23359, P25703, P27090, P27091, P27093, P30884, P30885
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TGFB3 | up-regulates | TGFBR2 | binding |
| TGFB3 | up-regulates | TGFB3 | binding |
| FOXE1 | “up-regulates quantity by expression” | TGFB3 | “transcriptional regulation” |
| TGFB3 | up-regulates | Angiogenesis |
Disease & clinical
Clinical variants and AI predictions
ClinVar
729 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 45 |
| Likely pathogenic | 31 |
| Uncertain significance | 351 |
| Likely benign | 219 |
| Benign | 14 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1031323 | NM_003239.5(TGFB3):c.411del (p.Ser138fs) | Pathogenic |
| 1072149 | NM_003239.5(TGFB3):c.990G>A (p.Trp330Ter) | Pathogenic |
| 1075580 | NM_003239.5(TGFB3):c.170dup (p.Pro57_Glu58insTer) | Pathogenic |
| 1215028 | NM_003239.5(TGFB3):c.621del (p.Val208fs) | Pathogenic |
| 1369504 | NM_003239.5(TGFB3):c.996G>A (p.Trp332Ter) | Pathogenic |
| 1392107 | NM_003239.5(TGFB3):c.723del (p.Asn241fs) | Pathogenic |
| 143945 | NM_003239.5(TGFB3):c.899G>A (p.Arg300Gln) | Pathogenic |
| 1451952 | NM_003239.5(TGFB3):c.355del (p.Glu119fs) | Pathogenic |
| 1453884 | NM_003239.5(TGFB3):c.436del (p.Leu146fs) | Pathogenic |
| 1701238 | NM_003239.5(TGFB3):c.623_624del (p.Val208fs) | Pathogenic |
| 2014576 | NM_003239.5(TGFB3):c.170del (p.Pro57fs) | Pathogenic |
| 2022384 | NM_003239.5(TGFB3):c.170_171del (p.Pro57fs) | Pathogenic |
| 2026166 | NM_003239.5(TGFB3):c.722del (p.Asn241fs) | Pathogenic |
| 2029032 | NM_003239.5(TGFB3):c.95_96insA (p.Phe32fs) | Pathogenic |
| 203489 | NM_003239.5(TGFB3):c.754+2T>C | Pathogenic |
| 203491 | NM_003239.5(TGFB3):c.704del (p.Asn235fs) | Pathogenic |
| 2084927 | NM_003239.5(TGFB3):c.912dup (p.Asn305fs) | Pathogenic |
| 2126250 | NM_003239.5(TGFB3):c.638del (p.Leu212_Leu213insTer) | Pathogenic |
| 2138172 | NM_003239.5(TGFB3):c.427A>T (p.Arg143Ter) | Pathogenic |
| 2751751 | NM_003239.5(TGFB3):c.516+1G>T | Pathogenic |
| 2783914 | NM_003239.5(TGFB3):c.547C>T (p.Gln183Ter) | Pathogenic |
| 2806440 | NM_003239.5(TGFB3):c.496C>T (p.Gln166Ter) | Pathogenic |
| 2862180 | NM_003239.5(TGFB3):c.496_497del (p.Gln166fs) | Pathogenic |
| 3223152 | NM_003239.5(TGFB3):c.971_972delinsACATTGACTACAT (p.Phe324fs) | Pathogenic |
| 3244030 | NC_000014.8:g.(?76425530)(76447236_?)del | Pathogenic |
| 3244031 | NC_000014.8:g.(?76446865)(76447236_?)del | Pathogenic |
| 3244032 | NC_000014.8:g.(?76425530)(76427439_?)del | Pathogenic |
| 3325699 | NM_003239.5(TGFB3):c.337_344delinsTAAGAATTT (p.Gly113_Ala115delinsTer) | Pathogenic |
| 3632516 | NM_003239.5(TGFB3):c.466dup (p.Val156fs) | Pathogenic |
| 3644729 | NM_003239.5(TGFB3):c.583_584dup (p.Thr196fs) | Pathogenic |
SpliceAI
1186 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 14:75961012:T:TA | donor_gain | 1.0000 |
| 14:75963350:T:TA | donor_gain | 1.0000 |
| 14:75963485:CGC:C | acceptor_gain | 1.0000 |
| 14:75963486:GCC:G | acceptor_loss | 1.0000 |
| 14:75963488:C:CC | acceptor_gain | 1.0000 |
| 14:75964493:A:AC | donor_gain | 1.0000 |
| 14:75964494:C:CC | donor_gain | 1.0000 |
| 14:75964510:A:C | donor_gain | 1.0000 |
| 14:75965696:C:CC | acceptor_gain | 1.0000 |
| 14:75971125:CCT:C | donor_gain | 1.0000 |
| 14:75971251:AGGAT:A | acceptor_gain | 1.0000 |
| 14:75971256:C:CC | acceptor_gain | 1.0000 |
| 14:75971256:C:T | acceptor_loss | 1.0000 |
| 14:75971257:T:C | acceptor_loss | 1.0000 |
| 14:75971550:GTTAC:G | donor_loss | 1.0000 |
| 14:75971551:TTA:T | donor_loss | 1.0000 |
| 14:75971552:TA:T | donor_loss | 1.0000 |
| 14:75971714:TTCGT:T | acceptor_gain | 1.0000 |
| 14:75971715:TCGT:T | acceptor_gain | 1.0000 |
| 14:75971716:CGT:C | acceptor_gain | 1.0000 |
| 14:75971716:CGTC:C | acceptor_gain | 1.0000 |
| 14:75971717:GTC:G | acceptor_loss | 1.0000 |
| 14:75971718:TCT:T | acceptor_loss | 1.0000 |
| 14:75971719:C:CC | acceptor_gain | 1.0000 |
| 14:75971719:C:CG | acceptor_loss | 1.0000 |
| 14:75971720:T:G | acceptor_loss | 1.0000 |
| 14:75971726:A:C | acceptor_gain | 1.0000 |
| 14:75980540:A:AC | donor_gain | 1.0000 |
| 14:75980541:C:CC | donor_gain | 1.0000 |
| 14:75980541:CT:C | donor_gain | 1.0000 |
AlphaMissense
2719 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 14:75959194:C:G | C411S | 1.000 |
| 14:75959195:A:G | C411R | 1.000 |
| 14:75959195:A:T | C411S | 1.000 |
| 14:75959199:A:C | C409W | 1.000 |
| 14:75959200:C:G | C409S | 1.000 |
| 14:75959200:C:T | C409Y | 1.000 |
| 14:75959201:A:G | C409R | 1.000 |
| 14:75959201:A:T | C409S | 1.000 |
| 14:75959292:G:C | C378W | 1.000 |
| 14:75959293:C:A | C378F | 1.000 |
| 14:75959293:C:G | C378S | 1.000 |
| 14:75959293:C:T | C378Y | 1.000 |
| 14:75959294:A:G | C378R | 1.000 |
| 14:75959294:A:T | C378S | 1.000 |
| 14:75959295:G:C | C377W | 1.000 |
| 14:75959296:C:T | C377Y | 1.000 |
| 14:75960959:G:C | C348W | 1.000 |
| 14:75960960:C:G | C348S | 1.000 |
| 14:75960960:C:T | C348Y | 1.000 |
| 14:75960961:A:G | C348R | 1.000 |
| 14:75960961:A:T | C348S | 1.000 |
| 14:75960967:C:A | G346C | 1.000 |
| 14:75960971:G:C | C344W | 1.000 |
| 14:75960972:C:G | C344S | 1.000 |
| 14:75960972:C:T | C344Y | 1.000 |
| 14:75960973:A:G | C344R | 1.000 |
| 14:75960973:A:T | C344S | 1.000 |
| 14:75961007:C:A | W332C | 1.000 |
| 14:75961007:C:G | W332C | 1.000 |
| 14:75961009:A:G | W332R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000167938 (14:75978795 T>C), RS1000208994 (14:75963285 G>A,C), RS1000265244 (14:75972107 C>G,T), RS1000447763 (14:75966036 T>C), RS1000674578 (14:75969661 G>A,C), RS1000679465 (14:75971160 G>A,T), RS1000817929 (14:75964821 G>A), RS1000855467 (14:75963141 A>G), RS1000881883 (14:75966319 G>C), RS1000903289 (14:75977361 C>G,T), RS1001188041 (14:75964451 C>T), RS1001305122 (14:75965443 A>T), RS1001307487 (14:75962765 G>T), RS1001331332 (14:75974120 A>G), RS1001599102 (14:75980155 T>C)
Disease associations
OMIM: gene MIM:190230 | disease phenotypes: MIM:615582, MIM:607086, MIM:107970, MIM:609192, MIM:601144, MIM:614816
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Rienhoff syndrome | Definitive | Autosomal dominant |
| familial thoracic aortic aneurysm and aortic dissection | Supportive | Autosomal dominant |
| Loeys-Dietz syndrome | Limited | Autosomal recessive |
| arrhythmogenic right ventricular dysplasia 1 | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| arrhythmogenic right ventricular cardiomyopathy | Limited | AD |
| familial thoracic aortic aneurysm and aortic dissection | Limited | AD |
Mondo (12): Rienhoff syndrome (MONDO:0014262), familial thoracic aortic aneurysm and aortic dissection (MONDO:0019625), arrhythmogenic right ventricular dysplasia 1 (MONDO:0007152), arrhythmogenic right ventricular cardiomyopathy (MONDO:0016587), long QT syndrome (MONDO:0002442), hypertrophic cardiomyopathy (MONDO:0005045), Loeys-Dietz syndrome (MONDO:0018954), cardiomyopathy (MONDO:0004994), hereditary disorder of connective tissue (MONDO:0023603), Brugada syndrome (MONDO:0015263), dilated cardiomyopathy (MONDO:0005021), Loeys-Dietz syndrome 4 (MONDO:0013897)
Orphanet (8): Familial thoracic aortic aneurysm and aortic dissection (Orphanet:91387), Uhl anomaly (Orphanet:3403), Inherited arrhythmogenic cardiomyopathy (Orphanet:247), Rare hypertrophic cardiomyopathy (Orphanet:217569), Loeys-Dietz syndrome (Orphanet:60030), Rare cardiomyopathy (Orphanet:167848), Brugada syndrome (Orphanet:130), Dilated cardiomyopathy (Orphanet:217604)
HPO phenotypes
122 total (30 of 122 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000098 | Tall stature |
| HP:0000175 | Cleft palate |
| HP:0000185 | Cleft soft palate |
| HP:0000193 | Bifid uvula |
| HP:0000202 | Orofacial cleft |
| HP:0000218 | High palate |
| HP:0000248 | Brachycephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000272 | Malar flattening |
| HP:0000276 | Long face |
| HP:0000278 | Retrognathia |
| HP:0000283 | Broad face |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000347 | Micrognathia |
| HP:0000396 | Overfolded helix |
| HP:0000426 | Prominent nasal bridge |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000508 | Ptosis |
| HP:0000520 | Proptosis |
| HP:0000525 | Abnormality iris morphology |
| HP:0000545 | Myopia |
| HP:0000592 | Blue sclerae |
| HP:0000637 | Long palpebral fissure |
| HP:0000766 | Abnormal sternum morphology |
| HP:0000767 | Pectus excavatum |
| HP:0000768 | Pectus carinatum |
| HP:0000822 | Hypertension |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST90013466_61 | Height | 2.000000e-10 |
| GCST90013468_29 | Height | 2.000000e-07 |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019571 | Arrhythmogenic Right Ventricular Dysplasia | C14.240.400.145; C14.280.238.028; C14.280.400.145; C16.131.240.400.145 |
| D053840 | Brugada Syndrome | C14.280.067.322; C14.280.123.250; C16.320.100 |
| D009202 | Cardiomyopathies | C14.280.238 |
| D002311 | Cardiomyopathy, Dilated | C14.280.195.160; C14.280.238.070; C16.320.488.750 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D055947 | Loeys-Dietz Syndrome | C05.660.207.532; C14.907.055.239.587; C14.907.109.139.587; C16.131.077.537; C16.320.510 |
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3712903 (SINGLE PROTEIN), CHEMBL3988637 (PROTEIN FAMILY)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
97 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | affects cotreatment, decreases expression, increases expression, decreases reaction | 11 |
| Cadmium | decreases reaction, increases expression, increases secretion, increases abundance, affects cotreatment (+1 more) | 4 |
| Dexamethasone | decreases reaction, decreases response to substance, affects cotreatment, decreases expression, increases expression | 4 |
| bisphenol A | increases expression, decreases reaction, decreases expression | 3 |
| sodium arsenite | increases secretion, affects cotreatment, decreases reaction, increases expression | 3 |
| Cadmium Chloride | increases abundance, affects cotreatment, decreases reaction, increases expression, increases secretion (+1 more) | 3 |
| Air Pollutants | decreases expression, increases abundance, decreases methylation, increases expression | 2 |
| Arsenic | decreases expression, affects methylation, affects cotreatment | 2 |
| Ascorbic Acid | decreases reaction, decreases response to substance, affects cotreatment, decreases expression, increases expression | 2 |
| Benzo(a)pyrene | increases expression, increases methylation | 2 |
| Cisplatin | decreases response to substance, increases expression | 2 |
| Diethylstilbestrol | increases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression, increases expression | 2 |
| Tretinoin | decreases reaction, decreases expression | 2 |
| Zeranol | increases expression | 2 |
| 1-Methyl-3-isobutylxanthine | affects cotreatment, decreases expression, increases expression | 2 |
| Particulate Matter | increases abundance, decreases methylation, increases expression, decreases expression | 2 |
| bisphenol F | affects cotreatment, increases expression | 1 |
| aminomethylphosphonic acid (AMPA) | decreases expression | 1 |
| cobaltiprotoporphyrin | decreases secretion, decreases reaction | 1 |
| ethyl-p-hydroxybenzoate | increases expression | 1 |
| arsenite | decreases expression | 1 |
| trimellitic anhydride | affects expression | 1 |
| afimoxifene | decreases expression, decreases reaction | 1 |
| sulforaphane | decreases expression | 1 |
| nonylphenol | increases expression, decreases reaction | 1 |
| aflatoxin B2 | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, decreases expression | 1 |
| cordycepin | increases secretion | 1 |
| paricalcitol | increases expression, affects cotreatment | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3883175 | Binding | Inhibition of TGF-beta-induced acid-soluble collagen levels in lung fibroblasts isolated from late stage idiopathic pulmonary fibrosis patient at 20 uM after 24 hrs by sircol collagen assay | Dimethylarginine Dimethylaminohydrolase inhibitors and methods of use thereof |
Cellosaurus cell lines
2 cell lines: 1 induced pluripotent stem cell, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C0C8 | BBANTWi010-A | Induced pluripotent stem cell | Male |
| CVCL_E0QU | Ubigene HeLa TGFB3 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
228 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT00879060 | PHASE4 | COMPLETED | Clinical and Therapeutic Implications of Fibrosis in Hypertrophic Cardiomyopathy |
| NCT01721967 | PHASE4 | COMPLETED | Ranolazine for the Treatment of Chest Pain in HCM Patients |
| NCT02948998 | PHASE4 | UNKNOWN | Evaluating the Effect of Spironolactone on Hypertrophic Cardiomyopathy |
| NCT03249272 | PHASE4 | TERMINATED | Microvascular Dysfunction in Nonischemic Cardiomyopathy: Insights From CMR Assessment of Coronary Flow Reserve |
| NCT04133532 | PHASE4 | COMPLETED | Effect of Metoprolol in Post Alcohol Septal Ablation Patients With Hypertrophic Cardiomyopathy |
| NCT06401343 | PHASE4 | RECRUITING | Use of SGLT2i in noHCM With HFpEF |
| NCT07103655 | PHASE4 | NOT_YET_RECRUITING | The Therapeutic Value of Mavacamten in Hypertrophic Cardiomyopathy With Mid-to-Apical Left Ventricular Obstruction |
| NCT07600177 | PHASE4 | RECRUITING | Mavacamten to Aficamten Transition in Patients With Obstructive Hypertrophic Cardiomyopathy |
| NCT00317967 | PHASE3 | COMPLETED | Study to Determine if Atorvastatin Reduces Size and Stiffness of Muscle in the Left Ventricle of the Heart |
| NCT00698074 | PHASE3 | UNKNOWN | Diastolic Ventricular Interaction and the Effects of Biventricular Pacing in Hypertrophic Cardiomyopathy |
| NCT00821353 | PHASE3 | COMPLETED | Antiarrhythmic Therapy Versus Catheter Ablation for Atrial Fibrillation in Hypertrophic Cardiomyopathy |
| NCT02431221 | PHASE3 | WITHDRAWN | Efficacy, Safety, and Tolerability of Perhexiline in Subjects With Hypertrophic Cardiomyopathy and Heart Failure |
| NCT03470545 | PHASE3 | COMPLETED | Clinical Study to Evaluate Mavacamten (MYK-461) in Adults With Symptomatic Obstructive Hypertrophic Cardiomyopathy |
| NCT05174416 | PHASE3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Mavacamten in Chinese Adults With Symptomatic Obstructive HCM |
| NCT05182658 | PHASE3 | ACTIVE_NOT_RECRUITING | Empagliflozin in Hypertrophic Cardiomyopathy |
| NCT05186818 | PHASE3 | COMPLETED | Phase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Placebo in Adults With Symptomatic oHCM |
| NCT05767346 | PHASE3 | COMPLETED | Phase 3 Trial to Evaluate the Efficacy and Safety of Aficamten Compared to Metoprolol Succinate in Adults With Symptomatic oHCM |
| NCT06116968 | PHASE3 | COMPLETED | An Open-Label Study of Aficamten for Chinese Patients With Symptomatic oHCM |
| NCT06873828 | PHASE3 | NOT_YET_RECRUITING | Evaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter MonitoringEvaluation of the Efficacy and Safety of Wearable ECG (AT-Patch) in Patients With Hypertrophic Cardiomyopathy Requiring 48-Hour Holter Monitoring |
| NCT07021976 | PHASE3 | RECRUITING | A Phase III Trial of HRS-1893 in Patients With Obstructive Hypertrophic Cardiomyopathy |
| NCT07023341 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Learn More About How Well Aficamten Works in Japanese Participants With Symptomatic Obstructive Hypertrophic Cardiomyopathy |
| NCT07202897 | PHASE3 | NOT_YET_RECRUITING | LA-HCM Study : Rivaroxaban for Antithrombotic Prevention in Hypertrophic Cardiomyopathy Patients With Abnormal Left Atrial Strain. |
| NCT03593317 | PHASE2 | RECRUITING | Blockade of the Renin-angiotensin-aldosterone System in Patients With ARVD |
| NCT03685149 | PHASE2 | COMPLETED | Pilot Randomized Trial With Flecainide in ARVC Patients |
| NCT06174220 | PHASE2 | RECRUITING | Targeted Therapy With Glycogen Synthase Kinase-3 Inhibition for Arrhythmogenic Cardiomyopathy |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00001631 | PHASE2 | COMPLETED | Study of Blood Flow in Heart Muscle |
| NCT00001894 | PHASE2 | COMPLETED | A Comparison of Two Treatments: Pacemaker and Percutaneous Transluminal Septal Ablation for Hypertrophic Cardiomyopathy |
| NCT00001960 | PHASE2 | COMPLETED | Studying the Effectiveness of Pacemaker Therapy in Children Who Have Thickened Heart Muscle |
| NCT00011076 | PHASE2 | COMPLETED | Pirfenidone to Treat Hypertrophic Cardiomyopathy |
| NCT00035386 | PHASE2 | COMPLETED | Alcohol Septal Ablation in Obstructive Hypertrophic Cardiomyopathy: A Pilot Study |
| NCT00430833 | PHASE2 | UNKNOWN | CHANCE - Candesartan in Hypertrophic Cardiomyopathy |
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Related Atlas pages
- Associated diseases: Loeys-Dietz syndrome, arrhythmogenic right ventricular dysplasia 1, Rienhoff syndrome, familial thoracic aortic aneurysm and aortic dissection, arrhythmogenic right ventricular cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular cardiomyopathy, arrhythmogenic right ventricular dysplasia 1, Brugada syndrome, cardiomyopathy, dilated cardiomyopathy, familial thoracic aortic aneurysm and aortic dissection, hereditary disorder of connective tissue, hypertrophic cardiomyopathy, Loeys-Dietz syndrome, Loeys-Dietz syndrome 4, long QT syndrome, Rienhoff syndrome