TGFBR2

gene
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Also known as TBRIITBR-ii

Summary

TGFBR2 (transforming growth factor beta receptor 2, HGNC:11773) is a protein-coding gene on chromosome 3p24.1, encoding TGF-beta receptor type-2 (P37173). Transmembrane serine/threonine kinase forming with the TGF-beta type I serine/threonine kinase receptor, TGFBR1, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3.

The protein encoded by this gene is a transmembrane protein that has a protein kinase domain, forms a heterodimeric complex with TGF-beta receptor type-1, and binds TGF-beta. This receptor/ligand complex phosphorylates proteins, which then enter the nucleus and regulate the transcription of genes related to cell proliferation, cell cycle arrest, wound healing, immunosuppression, and tumorigenesis. Mutations in this gene have been associated with Marfan Syndrome, Loeys-Deitz Aortic Aneurysm Syndrome, and the development of various types of tumors. Alternatively spliced transcript variants encoding different isoforms have been characterized.

Source: NCBI Gene 7048 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): Loeys-Dietz syndrome 2 (Definitive, ClinGen) — +2 more curated relationships
  • GWAS associations: 19
  • Clinical variants (ClinVar): 1,381 total — 50 pathogenic, 58 likely-pathogenic
  • Phenotypes (HPO): 177
  • Druggable target: yes — 22 molecules with ChEMBL bioactivity
  • Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 9 cancer types
  • Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
  • MANE Select transcript: NM_003242

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:11773
Approved symbolTGFBR2
Nametransforming growth factor beta receptor 2
Location3p24.1
Locus typegene with protein product
StatusApproved
AliasesTBRII, TBR-ii
Ensembl geneENSG00000163513
Ensembl biotypeprotein_coding
OMIM190182
Entrez7048

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 8 protein_coding, 3 protein_coding_CDS_not_defined, 1 retained_intron, 1 nonsense_mediated_decay

ENST00000295754, ENST00000359013, ENST00000672050, ENST00000672866, ENST00000673203, ENST00000673250, ENST00000714389, ENST00000714390, ENST00000714391, ENST00000714392, ENST00000894724, ENST00000941788, ENST00000941789

RefSeq mRNA: 15 — MANE Select: NM_003242 NM_001024847, NM_001407126, NM_001407127, NM_001407128, NM_001407129, NM_001407130, NM_001407132, NM_001407133, NM_001407134, NM_001407135, NM_001407136, NM_001407137, NM_001407138, NM_001407139, NM_003242

CCDS: CCDS2648, CCDS33727

Canonical transcript exons

ENST00000295754 — 7 exons

ExonStartEnd
ENSE000016290753065027030650460
ENSE000016592703068838430688511
ENSE000017346113067410530674246
ENSE000027041953060660130606977
ENSE000027097473067163830672437
ENSE000040237933069142030694142
ENSE000040237973064474730644915

Expression profiles

Bgee: expression breadth ubiquitous, 289 present calls, max score 99.65.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 122.9258 / max 954.1359, expressed in 1742 samples.

FANTOM5 promoters (9 alternative TSS)

Promoter IDTPM avgSamples expressed
35832104.53641729
3583114.83431631
358301.5492794
358340.5989346
358370.4001189
358400.3591201
358350.3485170
358390.230594
358290.069022

Top tissues by expression

294 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
pericardiumUBERON:000240799.65gold quality
tibiaUBERON:000097999.50gold quality
parietal pleuraUBERON:000240099.48gold quality
pleuraUBERON:000097799.34gold quality
colonic epitheliumUBERON:000039799.30gold quality
lower lobe of lungUBERON:000894999.28gold quality
visceral pleuraUBERON:000240199.12gold quality
vena cavaUBERON:000408799.07gold quality
superficial temporal arteryUBERON:000161499.01gold quality
cardiac muscle of right atriumUBERON:000337998.98gold quality
synovial jointUBERON:000221798.86gold quality
subcutaneous adipose tissueUBERON:000219098.73gold quality
cardia of stomachUBERON:000116298.71gold quality
adipose tissue of abdominal regionUBERON:000780898.67gold quality
urethraUBERON:000005798.66gold quality
peritoneumUBERON:000235898.66gold quality
omental fat padUBERON:001041498.66gold quality
adipose tissueUBERON:000101398.63gold quality
connective tissueUBERON:000238498.52gold quality
myocardiumUBERON:000234998.49gold quality
layer of synovial tissueUBERON:000761698.46gold quality
lungUBERON:000204898.45gold quality
smooth muscle tissueUBERON:000113598.42gold quality
descending thoracic aortaUBERON:000234598.42gold quality
heart right ventricleUBERON:000208098.41gold quality
gall bladderUBERON:000211098.41gold quality
pylorusUBERON:000116698.38gold quality
thoracic mammary glandUBERON:000520098.35gold quality
mammary glandUBERON:000191198.24gold quality
right lungUBERON:000216798.23gold quality

Single-cell (SCXA)

Detected in 17 experiment(s), a significant marker in 16.

ExperimentMarker?Max mean expression
E-GEOD-135922yes1288.94
E-MTAB-10287yes66.71
E-MTAB-10553yes47.57
E-HCAD-11yes44.24
E-GEOD-134144yes39.55
E-CURD-46yes35.61
E-HCAD-10yes30.87
E-HCAD-1yes28.90
E-CURD-119yes25.14
E-MTAB-8410yes23.81
E-HCAD-9yes18.30
E-MTAB-9543yes11.00
E-CURD-112yes10.54
E-MTAB-9067yes8.02
E-HCAD-35yes7.06

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): AP1, ATF1, ATF2, CEBPA, CEBPB, CREB1, CUX1, DLX2, EGR1, ELF3, ERG, ETS1, ETV1, ETV4, EWSR1, FLI1, FOXO3, H4C2, HDAC2, HOXA10, JUN, KLF14, MEIS1, MEIS2, NFKB, NFYA, NR3C1, PARP1, PAX3, PLAGL1, SIN3A, SMAD2, SMAD3, SNAI1, SNAI2, SP1, SP3, SP6, SPI1, SSRP1

miRNA regulators (miRDB)

185 targeting TGFBR2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-9-5P100.0072.282361
HSA-MIR-3924100.0072.092394
HSA-MIR-4262100.0073.263931
HSA-MIR-4510100.0066.602050
HSA-MIR-6127100.0066.762188
HSA-MIR-6129100.0066.462080
HSA-MIR-6130100.0066.692012
HSA-MIR-6133100.0066.482064
HSA-MIR-3163100.0077.238605
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-548AW99.9972.573559
HSA-MIR-520G-5P99.9966.76658
HSA-MIR-3667-3P99.9967.171636
HSA-MIR-480399.9871.993117
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-1213699.9872.815713
HSA-MIR-302E99.9670.742669
HSA-MIR-9-3P99.9670.882068
HSA-MIR-548AA99.9670.643753
HSA-MIR-548AP-3P99.9670.643753
HSA-MIR-548T-3P99.9670.643753
HSA-MIR-23A-3P99.9574.243163
HSA-MIR-23B-3P99.9574.243163

Functional genomics

ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map

Literature-anchored findings (GeneRIF, showing 40)

  • Altogether, these results identify a mechanism by which RhoB antagonizes TGF-beta action through transcriptional down-regulation of AP1 in T beta R-II promoter. (PMID:11741970)
  • treatment with the HDAC inhibitor induces TbetaRII promoter activity by the recruitment of the PCAF protein to the NF-Y complex, interacting with the inverted CCAAT box in the TbetaRII promoter (PMID:11744689)
  • Overexpression of a dominant negatively acting mutant of TGFBR2 in primitive hemopoietic progenitor cells renders them transiently unresponsive to both autocrine and paracrine TGF-beta signaling and leads to their enhanced survival and proliferation. (PMID:11777969)
  • TGF beta type II receptor mRNA concentration on the surface of human osteoblasts is increased by 1 alpha,25-dihydroxyvitamin D3 due to changes in receptor mRNA stability not associated with an increase in the rate of gene transcription. (PMID:11820800)
  • crystal structure of the human TbetaR2 ectodomain–TGF-beta3 complex (PMID:11850637)
  • present in diabetic foot ulcer (PMID:12060054)
  • TGFBII receptors were purified and refolded; they have an apparent molecular weight of 14 kDa as by size-exclusion chromatography (PMID:12077447)
  • data suggest the existence of a further definite subgroup of diffuse-type gastric carcinomas with altered TGFbeta-IIR expression, independent from a mutator phenotype with TGFbeta-IIR gene mutations (PMID:12174910)
  • Differential rates of frameshift alterations in four repeat sequences of hereditary nonpolyposis colorectal cancer tumors.These repeats consisted of (A)10 in the TGF beta RII, (G)8 in the BAX, (A)8 in the CASP1, and (CCA)7 in the APP genes. (PMID:12215842)
  • Coding region microsatellite mutations characteristic of defective mismatch repair Identification of TGFbetaRII coding region microsatellite mutations in vivo implicates this gene in the pathogenesis of human T-LBL/ALL. (PMID:12479849)
  • This protein was expressed locally in the media and adeventitia at injected arterial segments without any significant dissemination to remote areas. (PMID:12515396)
  • TGF-beta2 receptor expression in peritoneal fibroblasts was increased by hypoxia or hypoxia plus TGF-beta1, but decreased by TGF-beta1 alone. (PMID:12607775)
  • The loss of TbetaR-II expression in the primary tumor is associated with clinical stage (P <0.01) and predicts a significantly lower survival rate in renal cell carcinoma patients. (PMID:12736050)
  • Human breast tumors were screened for TGFBR2 mutation and/or altered expression of TGFBR2 protein. TGFBR2 was expressed in the epithelium and stroma of tumors, and was higher in patients having positive lymph nodes and/or negative ER and PR expression. (PMID:12825850)
  • role of a CCAAT box and three GC boxes in the regulation of the TbetaR-II promoters in embryonal carcinoma-differentiated cells (PMID:12840808)
  • Transforming growth factor beta1 receptor II is downregulated by E1A in adenovirus-infected cells. (PMID:12915548)
  • We observed subsequent loss of type II TGFbeta receptor (TBR2) expression in metastatic renal cell carcinomas [RCC}. We propose that loss of TBR3 is necessary for RCC carcinogenesis, and loss of TBR2 leads to acquisition of a metastatic phenotype. (PMID:12970754)
  • ERT mediates the expression of TGF-beta RII, and the transcriptional inhibition of ets-related transcription factor could be a one of the mechanisms of colonic carcinogenesis (PMID:14582709)
  • TbetaRII in transgenic mice plays a critical role in maintaining the nondifferentiated character of virgin mammary gland epithelium. (PMID:14601051)
  • expression values for TGF 1 and its receptors I, II, and III were twice as high in the group of patients with a diagnosis of high-grade lymphomas as in the group of patients diagnosed with low-grade lymphomas (PMID:14704634)
  • TGFBR2 has a role in progression of estrogen receptor-negative breast cancer (PMID:14760070)
  • each of the five Ets proteins influences the TbetaR-II promoter in a unique manner because of important differences in their biochemical properties or their patterns of cellular expression (PMID:14976186)
  • NMR analysis of the extracellular domain of the human TGFbeta type II receptor in complex with monomeric TGFbeta3 (PMID:15017149)
  • combined production of the immunosuppressants IL-10 and TGF-beta, as well as coexpression of TGF-beta RI and RII (required for cellular response to TGF-beta), may act to down-modulate host anti-Mycobacterium tuberculosis immunity (PMID:15102771)
  • an increased TGFbetaRI:TGFbetaRII ratio may underlie aberrant TGFbeta signaling in systemic sclerosis and contribute to elevated basal collagen production (PMID:15146427)
  • Our studies show that RDH12 is associated with retinal dystrophy and encodes an enzyme with a unique, nonredundant role in the photoreceptor cells. (PMID:15235604)
  • The first characterized nonepithelial tumors in hereditary nonpolyposis colorectal cancer seem to carry a limited panel of dna replication errors, including a frameshift at the TGFBR2 gene. (PMID:15350299)
  • thrombin via PAR1 induced the internalization of endoglin and type-II TGF-beta receptor (TbetaRII) but not type-I receptors in human ECs (PMID:15522964)
  • transforming growth factor beta type II receptor promoter activity and acetylation of Sp1 by recruitment of PCAF/p300 to a Sp1.NF-Y complex are induced by Trichostatin A (PMID:15647279)
  • possible role of heterozygous mutation in a newly described human phenotype that includes widespread perturbations in cardiovascular, craniofacial, neurocognitive and skeletal development (PMID:15731757)
  • UV-induced down-regulation of TbetaRII and the concerted over-expression of Smad7 may trigger the inhibition of the TGF-beta-induced phosphorylation of Smad2. (PMID:15811425)
  • Identification of TGFBR2 mutations in Marfan syndrome type II provided the direct evidence of the relation in humans. (PMID:15861007)
  • blockade of TGF-beta after intramuscular transfer of the soluble type II TGF-beta receptor gene suppressed hepatic fibrosis (PMID:15942678)
  • Repression of type II TGF-beta receptor may act as significant determinant of lung adenocarcinoma invasiveness, an early step in tumor progression toward metastasis. (PMID:15976377)
  • TGFBR2 mutations is associated with deregulation of cdk4 and colon cancer (PMID:16108056)
  • Identification of a novel TGFBR2 gene mutation in a Korean patient with Loeys-Dietz aortic aneurysm syndrome; no mutation in TGFBR2 gene in 30 patients with classic Marfan’s syndrome. (PMID:16283890)
  • prostate cancer cells mediate growth inhibition and differentiation of bone marrow endothelial cells through alteration of TGFbetaRII-mediated signal transduction. (PMID:16388503)
  • changes in TbetaRII levels by EGF are EGF receptor-kinase-dependent and are controlled by signals downstream of MEK1/2 (PMID:16428382)
  • Results of this analysis appear to exclude a role for the TGFBR1- or TGFBR2-mediated pathway effect in Kabuki syndrome. (PMID:16528739)
  • Down-regulation of TbetaRII in dermal cells or up-regulation of TbetaRII in epidermal cells reverses their migratory responses to serum and plasma, respectively. (PMID:16549496)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_reriotgfbr2bENSDARG00000034541
danio_reriotgfbr2aENSDARG00000059363
danio_rerioENSDARG00000113139
mus_musculusTgfbr2ENSMUSG00000032440
rattus_norvegicusTgfbr2ENSRNOG00000013265

Paralogs (11): TGFBR1 (ENSG00000106799), BMPR1A (ENSG00000107779), ACVR2B (ENSG00000114739), ACVR1 (ENSG00000115170), ACVR2A (ENSG00000121989), ACVR1C (ENSG00000123612), AMHR2 (ENSG00000135409), ACVR1B (ENSG00000135503), BMPR1B (ENSG00000138696), ACVRL1 (ENSG00000139567), BMPR2 (ENSG00000204217)

Protein

Protein identifiers

TGF-beta receptor type-2P37173 (reviewed: P37173)

Alternative names: TGF-beta type II receptor, Transforming growth factor-beta receptor type II

All UniProt accessions (6): A0AAQ5BI02, A0AAQ5BI03, P37173, A0AAQ5BI06, A3QNQ0, D2JYI1

UniProt curated annotations — full annotation on UniProt →

Function. Transmembrane serine/threonine kinase forming with the TGF-beta type I serine/threonine kinase receptor, TGFBR1, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and thus regulates a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinogenesis. The formation of the receptor complex composed of 2 TGFBR1 and 2 TGFBR2 molecules symmetrically bound to the cytokine dimer results in the phosphorylation and activation of TGFBR1 by the constitutively active TGFBR2. Activated TGFBR1 phosphorylates SMAD2 which dissociates from the receptor and interacts with SMAD4. The SMAD2-SMAD4 complex is subsequently translocated to the nucleus where it modulates the transcription of the TGF-beta-regulated genes. This constitutes the canonical SMAD-dependent TGF-beta signaling cascade. Also involved in non-canonical, SMAD-independent TGF-beta signaling pathways. Has transforming growth factor beta-activated receptor activity. Has transforming growth factor beta-activated receptor activity. Binds TGFB1, TGFB2 and TGFB3 in the picomolar affinity range without the participation of additional receptors. Blocks activation of SMAD2 and SMAD3 by TGFB1.

Subunit / interactions. Homodimer. Heterohexamer; TGFB1, TGFB2 and TGFB3 homodimeric ligands assemble a functional receptor composed of two TGFBR1 and TGFBR2 heterodimers to form a ligand-receptor heterohexamer. The respective affinity of TGFRB1 and TGFRB2 for the ligands may modulate the kinetics of assembly of the receptor and may explain the different biological activities of TGFB1, TGFB2 and TGFB3. Component of a complex composed of TSC22D1 (via N-terminus), TGFBR1 and TGFBR2; the interaction between TSC22D1 and TGFBR1 is inhibited by SMAD7 and promoted by TGFB1. Interacts with DAXX. Interacts with DYNLT4. Interacts with ZFYVE9; ZFYVE9 recruits SMAD2 and SMAD3 to the TGF-beta receptor. Interacts with and is activated by SCUBE3; this interaction does not affect TGFB1-binding to TGFBR2. Interacts with VPS39; this interaction is independent of the receptor kinase activity and of the presence of TGF-beta. Interacts with CLU. Homodimer; disulfide-linked.

Subcellular location. Cell membrane. Membrane raft Secreted.

Post-translational modifications. Phosphorylated on a Ser/Thr residue in the cytoplasmic domain.

Disease relevance. Hereditary non-polyposis colorectal cancer 6 (HNPCC6) [MIM:614331] An autosomal dominant disease associated with marked increase in cancer susceptibility. It is characterized by a familial predisposition to early-onset colorectal carcinoma (CRC) and extra-colonic tumors of the gastrointestinal, urological and female reproductive tracts. HNPCC is reported to be the most common form of inherited colorectal cancer in the Western world. Clinically, HNPCC is often divided into two subgroups. Type I is characterized by hereditary predisposition to colorectal cancer, a young age of onset, and carcinoma observed in the proximal colon. Type II is characterized by increased risk for cancers in certain tissues such as the uterus, ovary, breast, stomach, small intestine, skin, and larynx in addition to the colon. Diagnosis of classical HNPCC is based on the Amsterdam criteria: 3 or more relatives affected by colorectal cancer, one a first degree relative of the other two; 2 or more generation affected; 1 or more colorectal cancers presenting before 50 years of age; exclusion of hereditary polyposis syndromes. The term ‘suspected HNPCC’ or ‘incomplete HNPCC’ can be used to describe families who do not or only partially fulfill the Amsterdam criteria, but in whom a genetic basis for colon cancer is strongly suspected. The disease is caused by variants affecting the gene represented in this entry. Esophageal cancer (ESCR) [MIM:133239] A malignancy of the esophagus. The most common types are esophageal squamous cell carcinoma and adenocarcinoma. Cancer of the esophagus remains a devastating disease because it is usually not detected until it has progressed to an advanced incurable stage. The disease is caused by variants affecting the gene represented in this entry. Loeys-Dietz syndrome 2 (LDS2) [MIM:610168] An aortic aneurysm syndrome with widespread systemic involvement, characterized by arterial tortuosity and aneurysms, hypertelorism, and bifid uvula or cleft palate. Physical findings include prominent joint laxity, easy bruising, wide and atrophic scars, velvety and translucent skin with easily visible veins, spontaneous rupture of the spleen or bowel, and catastrophic complications of pregnancy, including rupture of the gravid uterus and the arteries, either during pregnancy or in the immediate postpartum period. Some patients have craniosynostosis, exotropy, micrognathia and retrognathia, structural brain abnormalities, and intellectual deficit. The disease is caused by variants affecting the gene represented in this entry. TGFBR2 mutations Cys-460 and His-460 have been reported to be associated with thoracic aortic aneurysms and dissection (TAAD). This phenotype, also known as thoracic aortic aneurysms type 3 (AAT3), is distinguised from LDS2 by having aneurysms restricted to thoracic aorta. As individuals carrying these mutations also exhibit descending aortic disease and aneurysms of other arteries, they have been considered as LDS2 by the OMIM resource.

Similarity. Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.

Isoforms (3)

UniProt IDNamesCanonical?
P37173-11, betaR-IIyes
P37173-22, betaR-IIB
P37173-33, TbetaRII-SE

RefSeq proteins (15): NP_001020018, NP_001394055, NP_001394056, NP_001394057, NP_001394058, NP_001394059, NP_001394061, NP_001394062, NP_001394063, NP_001394064, NP_001394065, NP_001394066, NP_001394067, NP_001394068, NP_003233* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000333TGFB_receptorFamily
IPR000719Prot_kinase_domDomain
IPR001245Ser-Thr/Tyr_kinase_cat_domDomain
IPR008271Ser/Thr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR015013Transforming_GF_b_rcpt_2_ectoDomain
IPR017194Transform_growth_fac-b_typ-2Family
IPR017441Protein_kinase_ATP_BSBinding_site
IPR045860Snake_toxin-like_sfHomologous_superfamily

Pfam: PF07714, PF08917

Enzyme classification (BRENDA):

  • EC 2.7.10.2 — non-specific protein-tyrosine kinase (BRENDA: 41 organisms, 396 substrates, 479 inhibitors, 43 Km, 32 kcat entries)

Substrate kinetics (BRENDA)

6 substrates with measured Km, best-characterized 6. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
ATP0.014–17.6412
[KDSRC KINASE]-L-TYROSINE0.0057–0.2412
POLY(GLU4-TYR)0.018–0.65910
EEEEYIQ[DP]-8-HYDROXY-5-(N,N-DIMETHYLSULFONAMIDO0.0571
S1 PEPTIDE0.0371
EEEEY0

Catalyzed reactions (Rhea), 2 shown:

  • L-seryl-[receptor-protein] + ATP = O-phospho-L-seryl-[receptor-protein] + ADP + H(+) (RHEA:18673)
  • L-threonyl-[receptor-protein] + ATP = O-phospho-L-threonyl-[receptor-protein] + ADP + H(+) (RHEA:44880)

UniProt features (109 total): sequence variant 38, strand 23, helix 17, disulfide bond 6, turn 4, modified residue 3, glycosylation site 3, splice variant 3, topological domain 2, binding site 2, signal peptide 1, chain 1, transmembrane region 1, domain 1, region of interest 1, mutagenesis site 1, sequence conflict 1, active site 1

Structure

Experimental structures (PDB)

22 structures.

PDBMethodResolution (Å)
1M9ZX-RAY DIFFRACTION1.05
8G4KX-RAY DIFFRACTION1.24
4XJJX-RAY DIFFRACTION1.4
9E9GX-RAY DIFFRACTION1.4
4P7UX-RAY DIFFRACTION1.5
5QINX-RAY DIFFRACTION1.57
5E8VX-RAY DIFFRACTION1.69
5TX4X-RAY DIFFRACTION1.88
5E8YX-RAY DIFFRACTION2.05
5E92X-RAY DIFFRACTION2.08
8YGZX-RAY DIFFRACTION2.1
1KTZX-RAY DIFFRACTION2.15
7DV6X-RAY DIFFRACTION2.39
5E91X-RAY DIFFRACTION2.42
5TY4ELECTRON CRYSTALLOGRAPHY2.9
3KFDX-RAY DIFFRACTION3
2PJYX-RAY DIFFRACTION3
9B9FX-RAY DIFFRACTION3
9FDYELECTRON MICROSCOPY3.4
9FKPELECTRON MICROSCOPY3.72
9FK5ELECTRON MICROSCOPY4.1
1PLOSOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P37173-F181.220.58

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 379 (proton acceptor)

Ligand- & substrate-binding residues (2): 250–258; 277

Post-translational modifications (3): 409, 548, 553

Disulfide bonds (6): 51–84, 54–71, 61–67, 77–101, 121–136, 138–143

Glycosylation sites (3): 70, 94, 154

Mutagenesis-validated functional residues (1):

PositionPhenotype
277abolishes kinase activity, tgf-beta signaling and interaction with daxx.

Function

Pathways and Gene Ontology

Reactome pathways

23 pathways

IDPathway
R-HSA-2173788Downregulation of TGF-beta receptor signaling
R-HSA-2173789TGF-beta receptor signaling activates SMADs
R-HSA-2173791TGF-beta receptor signaling in EMT (epithelial to mesenchymal transition)
R-HSA-3304356SMAD2/3 Phosphorylation Motif Mutants in Cancer
R-HSA-3642279TGFBR2 MSI Frameshift Mutants in Cancer
R-HSA-3645790TGFBR2 Kinase Domain Mutants in Cancer
R-HSA-3656532TGFBR1 KD Mutants in Cancer
R-HSA-3656535TGFBR1 LBD Mutants in Cancer
R-HSA-5689603UCH proteinases
R-HSA-9839389TGFBR3 regulates TGF-beta signaling
R-HSA-162582Signal Transduction
R-HSA-1643685Disease
R-HSA-170834Signaling by TGF-beta Receptor Complex
R-HSA-3304349Loss of Function of SMAD2/3 in Cancer
R-HSA-3304351Signaling by TGF-beta Receptor Complex in Cancer
R-HSA-3642278Loss of Function of TGFBR2 in Cancer
R-HSA-3656534Loss of Function of TGFBR1 in Cancer
R-HSA-392499Metabolism of proteins
R-HSA-5663202Diseases of signal transduction by growth factor receptors and second messengers
R-HSA-5688426Deubiquitination
R-HSA-597592Post-translational protein modification
R-HSA-9006936Signaling by TGFB family members
R-HSA-9839373Signaling by TGFBR3

MSigDB gene sets: 1081 (showing top): GOBP_MYELOID_CELL_DIFFERENTIATION, GOBP_CARDIAC_CHAMBER_DEVELOPMENT, GOBP_SMAD_PROTEIN_SIGNAL_TRANSDUCTION, GOBP_MORPHOGENESIS_OF_AN_EPITHELIUM, GOBP_REGULATION_OF_CELL_ACTIVATION, MODULE_52, GOBP_REGULATION_OF_LEUKOCYTE_PROLIFERATION, AP1_01, GOBP_EMBRYONIC_HEMOPOIESIS, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_MAMMARY_GLAND_MORPHOGENESIS, BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, GOBP_DENDRITIC_CELL_DIFFERENTIATION, GOBP_CARDIAC_SEPTUM_DEVELOPMENT

GO Biological Process (76): blood vessel development (GO:0001568), branching involved in blood vessel morphogenesis (GO:0001569), vasculogenesis (GO:0001570), in utero embryonic development (GO:0001701), epithelial to mesenchymal transition (GO:0001837), heart looping (GO:0001947), positive regulation of mesenchymal cell proliferation (GO:0002053), lens development in camera-type eye (GO:0002088), positive regulation of tolerance induction to self antigen (GO:0002651), positive regulation of B cell tolerance induction (GO:0002663), positive regulation of T cell tolerance induction (GO:0002666), outflow tract septum morphogenesis (GO:0003148), membranous septum morphogenesis (GO:0003149), outflow tract morphogenesis (GO:0003151), aortic valve morphogenesis (GO:0003180), atrioventricular valve morphogenesis (GO:0003181), tricuspid valve morphogenesis (GO:0003186), cardiac left ventricle morphogenesis (GO:0003214), endocardial cushion fusion (GO:0003274), growth plate cartilage chondrocyte growth (GO:0003430), apoptotic process (GO:0006915), transforming growth factor beta receptor signaling pathway (GO:0007179), Notch signaling pathway (GO:0007219), smoothened signaling pathway (GO:0007224), gastrulation (GO:0007369), nervous system development (GO:0007399), brain development (GO:0007420), heart development (GO:0007507), positive regulation of cell population proliferation (GO:0008284), response to xenobiotic stimulus (GO:0009410), regulation of gene expression (GO:0010468), positive regulation of epithelial cell migration (GO:0010634), positive regulation of epithelial to mesenchymal transition (GO:0010718), activin receptor signaling pathway (GO:0032924), embryonic hemopoiesis (GO:0035162), aorta morphogenesis (GO:0035909), regulation of cell population proliferation (GO:0042127), myeloid dendritic cell differentiation (GO:0043011), positive regulation of angiogenesis (GO:0045766), embryonic cranial skeleton morphogenesis (GO:0048701)

GO Molecular Function (21): protein serine/threonine kinase activity (GO:0004674), transmembrane receptor protein serine/threonine kinase activity (GO:0004675), transforming growth factor beta receptor activity (GO:0005024), transforming growth factor beta receptor activity, type II (GO:0005026), ATP binding (GO:0005524), glycosaminoglycan binding (GO:0005539), activin receptor activity, type I (GO:0016361), kinase activator activity (GO:0019209), type I transforming growth factor beta receptor binding (GO:0034713), type III transforming growth factor beta receptor binding (GO:0034714), SMAD binding (GO:0046332), metal ion binding (GO:0046872), activin binding (GO:0048185), transforming growth factor beta binding (GO:0050431), molecular adaptor activity (GO:0060090), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), signaling receptor activity (GO:0038023)

GO Cellular Component (13): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), cytosol (GO:0005829), plasma membrane (GO:0005886), caveola (GO:0005901), external side of plasma membrane (GO:0009897), membrane (GO:0016020), nuclear body (GO:0016604), signaling receptor complex (GO:0043235), membrane raft (GO:0045121), activin receptor complex (GO:0048179), transforming growth factor beta ligand-receptor complex (GO:0070021), cell surface (GO:0009986)

Reactome top-level categories

Rollup of top-12 pathways:

CategoryPathways
Signaling by TGF-beta Receptor Complex in Cancer3
Signaling by TGF-beta Receptor Complex2
Loss of Function of TGFBR2 in Cancer2
Loss of Function of TGFBR1 in Cancer2
TGF-beta receptor signaling activates SMADs1
Loss of Function of SMAD2/3 in Cancer1
Deubiquitination1
Signaling by TGFBR31
Signaling by TGFB family members1
Diseases of signal transduction by growth factor receptors and second messengers1
Disease1
Post-translational protein modification1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure4
positive regulation of tolerance induction3
anatomical structure development2
blood vessel morphogenesis2
anatomical structure morphogenesis2
heart valve morphogenesis2
kinase activity2
transforming growth factor beta receptor binding2
binding2
plasma membrane signaling receptor complex2
serine/threonine protein kinase complex2
vasculature development1
angiogenesis1
branching morphogenesis of an epithelial tube1
cell differentiation1
chordate embryonic development1
mesenchymal cell differentiation1
embryonic heart tube morphogenesis1
determination of heart left/right asymmetry1
positive regulation of cell population proliferation1
mesenchymal cell proliferation1
regulation of mesenchymal cell proliferation1
camera-type eye development1
tolerance induction to self antigen1
regulation of tolerance induction to self antigen1
B cell tolerance induction1
regulation of B cell tolerance induction1
T cell tolerance induction1
regulation of T cell tolerance induction1
outflow tract morphogenesis1
cardiac septum morphogenesis1
ventricular septum morphogenesis1
heart morphogenesis1
aortic valve development1
atrioventricular valve development1
tricuspid valve development1
atrioventricular valve morphogenesis1
cardiac ventricle morphogenesis1
endocardial cushion morphogenesis1
cell adhesion involved in heart morphogenesis1

Protein interactions and networks

STRING

5142 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
TGFBR2TGFB1P01137999
TGFBR2TGFB3P10600997
TGFBR2TGFB2P08112997
TGFBR2ENGP17813992
TGFBR2SMAD3P84022986
TGFBR2TGFBR1P36897986
TGFBR2SMAD2Q15796979
TGFBR2TGFBR3Q03167966
TGFBR2SMAD4Q13485961
TGFBR2ALKQ9UM73947
TGFBR2ACVRL1P37023916
TGFBR2HSP90AA1P07900909
TGFBR2HSP90AB1P08238909
TGFBR2FBN1P35555905
TGFBR2SHC1P29353894

IntAct

310 interactions, top by confidence:

ABTypeScore
TGFB3TGFBR2psi-mi:“MI:0407”(direct interaction)0.770
AK2TGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2ATP2A3psi-mi:“MI:0915”(physical association)0.560
CCT6ATGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2CDH1psi-mi:“MI:0915”(physical association)0.560
AP1S1TGFBR2psi-mi:“MI:0915”(physical association)0.560
CSNK1DTGFBR2psi-mi:“MI:0915”(physical association)0.560
DNASE1L1TGFBR2psi-mi:“MI:0915”(physical association)0.560
ELAVL4TGFBR2psi-mi:“MI:0915”(physical association)0.560
ETS2TGFBR2psi-mi:“MI:0915”(physical association)0.560
GNAO1TGFBR2psi-mi:“MI:0915”(physical association)0.560
GPM6ATGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2IDH1psi-mi:“MI:0915”(physical association)0.560
TGFBR2ITGAVpsi-mi:“MI:0915”(physical association)0.560
STT3ATGFBR2psi-mi:“MI:0915”(physical association)0.560
KELTGFBR2psi-mi:“MI:0915”(physical association)0.560
ATXN3TGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2MYCpsi-mi:“MI:0915”(physical association)0.560
NELL2TGFBR2psi-mi:“MI:0915”(physical association)0.560
PPARATGFBR2psi-mi:“MI:0915”(physical association)0.560
PSMD2TGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2PTNpsi-mi:“MI:0915”(physical association)0.560
RAPSNTGFBR2psi-mi:“MI:0915”(physical association)0.560
TGFBR2psi-mi:“MI:0915”(physical association)0.560
RPL37ATGFBR2psi-mi:“MI:0915”(physical association)0.560
SGCATGFBR2psi-mi:“MI:0915”(physical association)0.560
SUV39H1TGFBR2psi-mi:“MI:0915”(physical association)0.560
TCOF1TGFBR2psi-mi:“MI:0915”(physical association)0.560
WT1TGFBR2psi-mi:“MI:0915”(physical association)0.560
YY1TGFBR2psi-mi:“MI:0915”(physical association)0.560

BioGRID (325): CBL (Reconstituted Complex), CBL (Affinity Capture-Western), TGFBR2 (Biochemical Activity), PIK3CB (Affinity Capture-MS), CDC6 (Affinity Capture-MS), PKN3 (Affinity Capture-MS), PLEKHH3 (Affinity Capture-MS), ACVR2B (Affinity Capture-MS), ACVR2A (Affinity Capture-MS), PKN2 (Affinity Capture-MS), TYK2 (Affinity Capture-MS), JAK1 (Affinity Capture-MS), PIK3R2 (Affinity Capture-MS), PIK3R1 (Affinity Capture-MS), PIK3R3 (Affinity Capture-MS)

ESM2 similar proteins: A1A5G2, A4FUF0, A4Q9F4, A6H8I0, A6NNY8, D2HBJ8, E1C1R4, O24454, O94888, P0C8Z3, P15209, P34547, P37173, Q03351, Q0V9G5, Q16620, Q3LAC4, Q49A26, Q504Q3, Q562D5, Q5DU02, Q5R7T2, Q5REY7, Q5RKH0, Q5U252, Q5XGZ2, Q5ZLS7, Q63604, Q6DCJ1, Q6GNI6, Q6IE70, Q6NTR6, Q6P5G6, Q6P9L4, Q70CQ1, Q70EL2, Q70Z35, Q7ZUM8, Q8BGF7, Q8BY87

Diamond homologs: A0A0P0XII1, A0A0R0HPY5, A7J1T2, C0LGD6, C0LGD8, C0LGD9, C0LGG3, C0LGR6, C0LGV0, O00238, O00506, O04086, O35607, O46680, O64556, O65440, P04627, P09560, P0C5E2, P10398, P10533, P14056, P15056, P18161, P20792, P27037, P27038, P27039, P27040, P27041, P27966, P28028, P34908, P36894, P36895, P36896, P36897, P36898, P37023, P37172

SIGNOR signaling

45 interactions.

AEffectBMechanism
TGFB2up-regulatesTGFBR2binding
TGFB3up-regulatesTGFBR2binding
DAXXup-regulatesTGFBR2binding
HSP90AA1up-regulatesTGFBR2binding
SRCup-regulatesTGFBR2phosphorylation
LY-2157299down-regulatesTGFBR2“chemical inhibition”
SMURF1“down-regulates activity”TGFBR2ubiquitination
SMURF2“down-regulates activity”TGFBR2ubiquitination
TGFBR2up-regulatesPARD6Aphosphorylation
TGFBR2“up-regulates activity”PIK3R1binding
TGFBR2up-regulatesPIK3R1binding
TGFBR2up-regulatesPIK3R2binding
TGFBR2“up-regulates activity”TGFBR2phosphorylation
TGFBR2“up-regulates activity”ZFYVE9binding
TGFBR2“up-regulates activity”TGFBR1phosphorylation
TGFBR2“down-regulates activity”TGFBR2phosphorylation
TGFBR2“up-regulates activity”PI3Kbinding
TGFBR2up-regulatesPI3Kbinding
SMURF“down-regulates activity”TGFBR2ubiquitination
TGFB1up-regulatesTGFBR2binding
TGFBR2up-regulatesTGFBR1phosphorylation
TGFb“up-regulates activity”TGFBR2binding
hsa-miR-23b-3p“down-regulates quantity by repression”TGFBR2“post transcriptional regulation”
hsa-miR-21-5p“down-regulates quantity by repression”TGFBR2“post transcriptional regulation”

Disease & clinical

Cancer significance

From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 9 cancer types — CCRCC, CEAD, CESC, COADREAD, ESCA, HNSC, PAAD, PANCREAS, STAD.

Clinical variants and AI predictions

ClinVar

1381 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic50
Likely pathogenic58
Uncertain significance637
Likely benign384
Benign45

Top pathogenic / likely-pathogenic (30)

Variant IDHGVSClassification
1066976NM_003242.6(TGFBR2):c.1342T>C (p.Tyr448His)Pathogenic
12501NM_003242.6(TGFBR2):c.1601_1602dup (p.Ala535fs)Pathogenic
12503NM_003242.6(TGFBR2):c.1576G>C (p.Glu526Gln)Pathogenic
12504NM_003242.6(TGFBR2):c.1524G>A (p.Gln508=)Pathogenic
12505NM_003242.6(TGFBR2):c.923T>C (p.Leu308Pro)Pathogenic
12506NM_003242.6(TGFBR2):c.1346C>T (p.Ser449Phe)Pathogenic
12508NM_003242.6(TGFBR2):c.1006T>A (p.Tyr336Asn)Pathogenic
12510NM_003242.6(TGFBR2):c.1069G>T (p.Gly357Trp)Pathogenic
12511NM_003242.6(TGFBR2):c.1583G>A (p.Arg528His)Pathogenic
12512NM_003242.6(TGFBR2):c.1582C>T (p.Arg528Cys)Pathogenic
12514NM_003242.6(TGFBR2):c.1378C>T (p.Arg460Cys)Pathogenic
12515NM_003242.6(TGFBR2):c.1379G>A (p.Arg460His)Pathogenic
12518NM_003242.6(TGFBR2):c.1280C>T (p.Pro427Leu)Pathogenic
12519NM_003242.6(TGFBR2):c.1483C>T (p.Arg495Ter)Pathogenic
1299545NM_003242.6(TGFBR2):c.1582C>A (p.Arg528Ser)Pathogenic
1386703NM_003242.6(TGFBR2):c.1558T>C (p.Cys520Arg)Pathogenic
1386732NM_003242.6(TGFBR2):c.1610G>C (p.Arg537Pro)Pathogenic
1456174NM_003242.6(TGFBR2):c.961T>G (p.Tyr321Asp)Pathogenic
1470300NM_003242.6(TGFBR2):c.1378C>G (p.Arg460Gly)Pathogenic
1514292NM_003242.6(TGFBR2):c.1152T>G (p.Asn384Lys)Pathogenic
1686258NM_003242.6(TGFBR2):c.1447del (p.Cys483fs)Pathogenic
2104447NM_003242.6(TGFBR2):c.1133G>A (p.Arg378Lys)Pathogenic
213929NM_003242.6(TGFBR2):c.1276G>A (p.Ala426Thr)Pathogenic
213930NM_003242.6(TGFBR2):c.1277C>A (p.Ala426Asp)Pathogenic
213934NM_003242.6(TGFBR2):c.1489C>T (p.Arg497Ter)Pathogenic
239528NM_003242.6(TGFBR2):c.1271A>G (p.Tyr424Cys)Pathogenic
2574078NM_003242.6(TGFBR2):c.1330C>T (p.Gln444Ter)Pathogenic
263412NM_003242.6(TGFBR2):c.831G>T (p.Lys277Asn)Pathogenic
263559NM_003242.6(TGFBR2):c.1136A>T (p.Asp379Val)Pathogenic
264260NM_003242.6(TGFBR2):c.1178G>A (p.Cys393Tyr)Pathogenic

SpliceAI

1987 predictions. Top by Δscore:

VariantEffectΔscore
3:30606973:GTCGG:Gdonor_gain1.0000
3:30627370:C:Gdonor_gain1.0000
3:30644743:TCA:Tacceptor_loss1.0000
3:30644744:CA:Cacceptor_loss1.0000
3:30644745:A:AGacceptor_gain1.0000
3:30644745:AGTT:Aacceptor_loss1.0000
3:30644746:G:Aacceptor_loss1.0000
3:30644746:G:GTacceptor_gain1.0000
3:30644746:GT:Gacceptor_gain1.0000
3:30644746:GTT:Gacceptor_gain1.0000
3:30644746:GTTA:Gacceptor_gain1.0000
3:30644746:GTTAA:Gacceptor_gain1.0000
3:30644896:G:GTdonor_gain1.0000
3:30644911:GTATG:Gdonor_gain1.0000
3:30644913:ATGGT:Adonor_loss1.0000
3:30644914:TGGT:Tdonor_loss1.0000
3:30644916:G:GAdonor_loss1.0000
3:30644916:G:GGdonor_gain1.0000
3:30644917:T:Gdonor_loss1.0000
3:30650457:GAAG:Gdonor_gain1.0000
3:30672438:G:GAdonor_loss1.0000
3:30672439:T:Adonor_loss1.0000
3:30674099:CTATA:Cacceptor_loss1.0000
3:30674100:TATA:Tacceptor_loss1.0000
3:30674102:TAGGT:Tacceptor_loss1.0000
3:30674103:A:Cacceptor_loss1.0000
3:30674103:AGGT:Aacceptor_gain1.0000
3:30674103:AGGTG:Aacceptor_gain1.0000
3:30674104:GGT:Gacceptor_gain1.0000
3:30674104:GGTG:Gacceptor_gain1.0000

AlphaMissense

3785 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
3:30644803:T:AC51S1.000
3:30644804:G:CC51S1.000
3:30644882:G:AC77Y1.000
3:30644883:T:GC77W1.000
3:30644902:T:CC84R1.000
3:30644903:G:AC84Y1.000
3:30644904:T:GC84W1.000
3:30650307:T:AC101S1.000
3:30650308:G:CC101S1.000
3:30650309:C:GC101W1.000
3:30650367:T:AC121S1.000
3:30650368:G:CC121S1.000
3:30650414:T:GC136W1.000
3:30650420:T:GC138W1.000
3:30671940:G:CG253R1.000
3:30671946:T:AF255I1.000
3:30671946:T:CF255L1.000
3:30671946:T:GF255V1.000
3:30671947:T:CF255S1.000
3:30671947:T:GF255C1.000
3:30671948:T:AF255L1.000
3:30671948:T:GF255L1.000
3:30671949:G:CA256P1.000
3:30671950:C:AA256D1.000
3:30671971:T:CL263P1.000
3:30672007:C:AA275E1.000
3:30672010:T:AV276D1.000
3:30672012:A:GK277E1.000
3:30672014:G:CK277N1.000
3:30672014:G:TK277N1.000

dbSNP variants (sampled 300 via entrez): RS1000081419 (3:30677883 C>G,T), RS1000111238 (3:30632388 T>G), RS1000113470 (3:30669541 G>T), RS1000113976 (3:30629401 A>G), RS1000169819 (3:30631080 C>G,T), RS1000249248 (3:30632152 C>G,T), RS1000288055 (3:30646863 T>A), RS1000306899 (3:30687682 T>C), RS1000367603 (3:30607480 G>C), RS1000375851 (3:30661050 G>A), RS1000415756 (3:30681572 T>C), RS1000424069 (3:30645007 T>G), RS1000444750 (3:30629035 C>A,T), RS1000475674 (3:30611910 C>G,T), RS1000531706 (3:30651077 A>T)

Disease associations

OMIM: gene MIM:190182 | disease phenotypes: MIM:607086, MIM:610168, MIM:133239, MIM:614331, MIM:154700, MIM:130000, MIM:609192, MIM:194200

GenCC curated gene-disease

DiseaseClassificationInheritance
Loeys-Dietz syndrome 2DefinitiveAutosomal dominant
Loeys-Dietz syndromeSupportiveAutosomal dominant
familial thoracic aortic aneurysm and aortic dissectionSupportiveAutosomal dominant

ClinGen Gene-Disease Validity (1)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
Loeys-Dietz syndrome 2DefinitiveAD

Mondo (17): familial thoracic aortic aneurysm and aortic dissection (MONDO:0019625), diabetic retinopathy (MONDO:0005266), Loeys-Dietz syndrome 2 (MONDO:0012427), esophageal cancer (MONDO:0007576), colorectal cancer, hereditary nonpolyposis, type 6 (MONDO:0013695), Marfan syndrome (MONDO:0007947), Ehlers-Danlos syndrome (MONDO:0020066), familial colorectal cancer (MONDO:0023113), Loeys-Dietz syndrome (MONDO:0018954), hepatoblastoma (MONDO:0018666), connective tissue disorder (MONDO:0003900), aortic aneurysm, familial thoracic 1 (MONDO:0024559), Loeys-Dietz syndrome 1 (MONDO:0012212), multiple congenital anomalies/dysmorphic syndrome (MONDO:0019042), thoracic aortic aneurysm (MONDO:0005396)

Orphanet (13): Familial thoracic aortic aneurysm and aortic dissection (Orphanet:91387), Marfan syndrome type 2 (Orphanet:284973), Marfan syndrome (Orphanet:558), Lynch syndrome (Orphanet:144), Squamous cell carcinoma of the esophagus (Orphanet:99977), Marfan syndrome type 1 (Orphanet:284963), Ehlers-Danlos syndrome (Orphanet:98249), Loeys-Dietz syndrome (Orphanet:60030), Hepatoblastoma (Orphanet:449), Familial aortic dissection (Orphanet:229), Multiple congenital anomalies/dysmorphic syndrome (Orphanet:68341), Furlong syndrome (Orphanet:97295), NON RARE IN EUROPE: Wolff-Parkinson-White syndrome (Orphanet:907)

HPO phenotypes

177 total (30 of 177 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000023Inguinal hernia
HP:0000098Tall stature
HP:0000175Cleft palate
HP:0000193Bifid uvula
HP:0000202Orofacial cleft
HP:0000238Hydrocephalus
HP:0000272Malar flattening
HP:0000278Retrognathia
HP:0000316Hypertelorism
HP:0000347Micrognathia
HP:0000505Visual impairment
HP:0000520Proptosis
HP:0000525Abnormality iris morphology
HP:0000545Myopia
HP:0000577Exotropia
HP:0000592Blue sclerae
HP:0000708Atypical behavior
HP:0000716Depression
HP:0000737Irritability
HP:0000738Hallucinations
HP:0000739Anxiety
HP:0000766Abnormal sternum morphology
HP:0000767Pectus excavatum
HP:0000768Pectus carinatum
HP:0000822Hypertension
HP:0000939Osteoporosis
HP:0000963Thin skin
HP:0000964Eczematoid dermatitis
HP:0000965Cutis marmorata

GWAS associations

19 associations (top):

StudyTraitp-value
GCST000107_7Tonometry2.000000e-07
GCST001563_2Migraine1.000000e-09
GCST001937_52Breast cancer2.000000e-08
GCST002079_32Migraine - clinic-based2.000000e-08
GCST002566_6Response to chemotherapy in breast cancer hypertensive cases (cumulative dose) (bevacizumab)7.000000e-06
GCST003075_109Cognitive decline rate in late mild cognitive impairment1.000000e-06
GCST003075_87Cognitive decline rate in late mild cognitive impairment8.000000e-08
GCST003542_42Night sleep phenotypes5.000000e-06
GCST003720_1Migraine8.000000e-09
GCST004988_221Breast cancer7.000000e-14
GCST006624_104Systolic blood pressure8.000000e-16
GCST006979_57Heel bone mineral density1.000000e-13
GCST007538_2Cellular nuclear factor (erythroid-derived 2)-like 2 levels2.000000e-07
GCST008058_39Estimated glomerular filtration rate1.000000e-10
GCST008059_252Estimated glomerular filtration rate2.000000e-10
GCST009391_1Metabolite levels7.000000e-06
GCST009391_1373Metabolite levels4.000000e-06
GCST009391_793Metabolite levels6.000000e-06
GCST011050_2Postprandial triglyceride response2.000000e-06

EFO canonical traits (9, from GWAS)

EFO IDTrait name
EFO:0005944cumulative dose response to bevacizumab
EFO:0007710cognitive decline measurement
EFO:0006335systolic blood pressure
EFO:0009270heel bone mineral density
EFO:0009794NRF2 measurement
EFO:0009777citrulline measurement
EFO:0010367lysophosphatidylethanolamine 18:0 measurement
EFO:0010395sphingomyelin 22:0 measurement
EFO:0004530triglyceride measurement

MeSH disease descriptors (11)

DescriptorNameTree numbers
D017545Aortic Aneurysm, ThoracicC14.907.055.239.125; C14.907.109.139.125
D003240Connective Tissue DiseasesC17.300
D003930Diabetic RetinopathyC11.768.257; C14.907.320.382; C19.246.099.500.382
D004535Ehlers-Danlos SyndromeC14.907.454.240; C15.378.463.515.240; C16.131.831.428; C16.320.850.260; C17.300.200.310; C17.800.804.428; C17.800.827.260
D018197HepatoblastomaC04.557.435.380
D055947Loeys-Dietz SyndromeC05.660.207.532; C14.907.055.239.587; C14.907.109.139.587; C16.131.077.537; C16.320.510
D008382Marfan SyndromeC05.116.099.674; C14.240.400.725; C14.280.400.725; C16.131.077.550; C16.131.240.400.720; C16.320.540; C17.300.500
D014927Wolff-Parkinson-White SyndromeC14.280.067.780.977; C14.280.123.750.977; C16.131.240.400.980
C562834Aortic Aneurysm, Familial Thoracic 1 (supp.)
C537783Aortic aneurysm, familial thoracic 3 (supp.)
C566039Colorectal Cancer, Hereditary Nonpolyposis, Type 6 (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL4267 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

22 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 190,862 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1171837PONATINIB48,955
CHEMBL1229517VEMURAFENIB415,704
CHEMBL1287853FEDRATINIB43,554
CHEMBL1336SORAFENIB486,060
CHEMBL2028663DABRAFENIB412,430
CHEMBL3348923TOVORAFENIB4834
CHEMBL477772PAZOPANIB415,540
CHEMBL5416410DASATINIB4655
CHEMBL31965CANERTINIB38,083
CHEMBL428690ALVOCIDIB327,781
CHEMBL603469LESTAURTINIB3
CHEMBL2364611GALUNISERTIB21,929
CHEMBL2386889SCH-9007762740
CHEMBL402548DANUSERTIB21,928
CHEMBL403989TG100-8012249
CHEMBL475251R-4062762
CHEMBL482968ENMD-207621,656
CHEMBL495727AT-928321,376
CHEMBL296468BMS-38703212,075
CHEMBL3545083RGB-2866381551
CHEMBL482967CYC-1161
CHEMBL574738AST-4871

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

1 annotations.

VariantTypeLevelDrugsPhenotypes
rs3087465Toxicity3irinotecanColorectal Neoplasms

PharmGKB variants

1 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs3087465TGFBR232.501irinotecan

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: catalytic receptor — Type II receptor serine/threonine kinases

Most potent curated ligand interactions (7 total), top 7:

LigandActionAffinityParameter
compound 13a [PMID: 23639540]Inhibition8.86pIC50
compound 13d [PMID: 23639540]Inhibition7.59pIC50
galunisertibInhibition6.68pIC50
TGFβ3Agonist6.53pKd
LY2109761Inhibition6.52pKi
compound 15b [PMID: 16539403]Inhibition6.45pIC50
H. polygyrus TGF-β mimicAgonist5.53pKd

Binding affinities (BindingDB)

853 measured of 859 human assays (859 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
N-[4-({2-[6-(difluoromethyl)pyridin-2-yl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)pyridin-2-yl]acetamideIC500.19 nMUS-10336761: TGFβ receptor antagonist
N-{5-[(4,4-difluoropiperidin-1-yl)methyl]-2-(6-methylpyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl}-3-fluoropyridin-4-amineIC500.25 nMUS-10336761: TGFβ receptor antagonist
N-(4-{[5-(morpholin-4-ylmethyl)-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]amino}pyridin-2-yl)acetamideIC500.25 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 2IC500.25 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 33IC500.25 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 8IC500.26 nMUS-10399987: TGF beta receptor antagonists
3-fluoro-N-(5-{[(1-methylcyclobutyl)amino]methyl}-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl)pyridin-4-amineIC500.27 nMUS-10336761: TGFβ receptor antagonist
6-(1-(1-cyanocyclopropyl)-4-(4-fluorophenyl)-1H- imidazol-5-yl)imidazo[1,2-b]pyridazine-3-carbonitrileIC500.3 nMUS-9884868: TGF-beta inhibitors
2-[(3R)-3-hydroxypyrrolidin-1-yl]-N-[4-({2-[6-(trifluoromethyl)pyridin-2-yl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)pyridin-2-yl]acetamideIC500.3 nMUS-10336761: TGFβ receptor antagonist
N-[4-({2-[6-(trifluoromethyl)pyridin-2-yl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)pyridin-2-yl]cyclopropanecarboxamideIC500.37 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 31IC500.37 nMUS-10399987: TGF beta receptor antagonists
3-chloro-N-[2-(6-fluoropyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]pyridin-4-amineIC500.39 nMUS-10336761: TGFβ receptor antagonist
6-(4-(4-fluorophenyl)-1-isopropyl-1H-imidazol-5- yl)imidazo[1,2-b]pyridazine-3-carbonitrileIC500.4 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-ethyl-1H-imidazol-5- yl)imidazo[1,2-a]pyridine-3-carboxamideIC500.4 nMUS-9884868: TGF-beta inhibitors
6-[2-(6-chloro-2-pyridinyl)-3-pyridinyl]imidazo[1,2-a]pyridine-3-carboxamideIC500.4 nMUS-9981944: GDF-8 inhibitors
N-[4-({5-[(4,4-difluoropiperidin-1-yl)methyl]-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)pyridin-2-yl]acetamideIC500.4 nMUS-10336761: TGFβ receptor antagonist
N-(5-{[(2H-1,3-benzodioxol-5-ylmethyl)amino]methyl}-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl)-3-fluoropyridin-4-amineIC500.4 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 4IC500.42 nMUS-10399987: TGF beta receptor antagonists
N-{2-[6-(difluoromethyl)-5-fluoropyridin-2-yl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}-3-fluoropyridin-4-amineIC500.46 nMUS-10336761: TGFβ receptor antagonist
3-[4-({4-[(3-fluoropyridin-4-yl)amino]-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-5-yl}methyl)piperazin-1-yl]phenolIC500.47 nMUS-10336761: TGFβ receptor antagonist
(3S)-1-({4-[(3-fluoropyridin-4-yl)amino]-2-(6-methylpyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-5-yl}methyl)pyrrolidin-3-olIC500.49 nMUS-10336761: TGFβ receptor antagonist
6-(4-(3-chloro-4-fluorophenyl)-1-(3-fluorocyclobutyl)- 1H-imidazol-5-yl)imidazo[1,2-b]pyridazine-3- carbonitrileIC500.5 nMUS-9884868: TGF-beta inhibitors
6-(4-(4-fluorophenyl)-1-isopropyl-1H-imidazol-5- yl)imidazo[1,2-a]pyridine-3-carboxamideIC500.5 nMUS-9884868: TGF-beta inhibitors
6-(1-cyclobutyl-4-(4-fluorophenyl)-1H-imidazol-5- yl)imidazo[1,2-a]pyridine-3-carboxamideIC500.5 nMUS-9884868: TGF-beta inhibitors
4-[({4-[(3-fluoropyridin-4-yl)amino]-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-5-yl}methyl)amino]butan-2-olIC500.52 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 5IC500.53 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 10IC500.56 nMUS-10399987: TGF beta receptor antagonists
1-({4-[(3-fluoropyridin-4-yl)amino]-2-(pyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-5-yl}methyl)piperidin-4-olIC500.58 nMUS-10336761: TGFβ receptor antagonist
3-fluoro-N-[2-(pyridin-2-yl)-5-({[2-(pyridin-2-yl)propan-2-yl]amino}methyl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]pyridin-4-amineIC500.58 nMUS-10336761: TGFβ receptor antagonist
3-chloro-N-[2-(5-fluoropyridin-2-yl)pyrrolo[2,1-f][1,2,4]triazin-4-yl]pyridin-4-amineIC500.59 nMUS-10336761: TGFβ receptor antagonist
(3S)-1-({2-[6-(difluoromethyl)pyridin-2-yl]-4-[(3-fluoropyridin-4-yl)amino]pyrrolo[2,1-f][1,2,4]triazin-5-yl}methyl)pyrrolidin-3-olIC500.59 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 38IC500.59 nMUS-10399987: TGF beta receptor antagonists
6-(4-(4-fluorophenyl)-1-(3- (hydroxymethyl)cyclobutyl)-1H-imidazol-5- yl)imidazo[1,2-b]pyridazine-3-carbonitrileIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-(2-cylcobutylethyl)- 1H-imidazol-5-yl)imidazo[1,2-b]pyridazine-3- carbonitrileIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-isopropyl-1H- imidazol-5-yl)imidazo[1,2-b]pyridazine-3-carbonitrileIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-ethyl-1H-imidazol-5- yl)imidazo[1,2-b]pyridazine-3-carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(1-(2,2-difluoropropyl)-4-(4-fluorophenyl)-1H- imidazol-5-yl)imidazo[1,2-b]pyridazine-3-carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-(2,2-difluoropropyl)- 1H-imidazol-5-yl)imidazo[1,2-b]pyridazine-3- carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(1-(1-cyclopropylethyl)-4-(4-fluorophenyl)-1H- imidazol-5-yl)imidazo[1,2-a]pyridine-3-carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(1-(sec-butyl)-4-(4-fluorophenyl)-1H-imidazol-5- yl)imidazo[1,2-a]pyridine-3-carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-(2,2-difluoroethyl)- 1H-imidazol-5-yl)imidazo[1,2-a]pyridine-3- carboxamideIC500.6 nMUS-9884868: TGF-beta inhibitors
2-[(2-hydroxy-2-methylpropyl)amino]-N-[4-({2-[6-(trifluoromethyl)pyridin-2-yl]pyrrolo[2,1-f][1,2,4]triazin-4-yl}amino)pyridin-2-yl]acetamideIC500.6 nMUS-10336761: TGFβ receptor antagonist
US10399987, Example 11IC500.6 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 40IC500.6 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 12IC500.64 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 39IC500.64 nMUS-10399987: TGF beta receptor antagonists
US10399987, Example 20IC500.67 nMUS-10399987: TGF beta receptor antagonists
6-(1-ethyl-4-(4-fluorophenyl)-1H-imidazol-5- yl)imidazo[1,2-b]pyridazine-3-carboxamideIC500.7 nMUS-9884868: TGF-beta inhibitors
6-(4-(4-fluorophenyl)-1-isopropyl-1H-imidazol-5- yl)imidazo[1,2-b]pyridazine-3-carboxamideIC500.7 nMUS-9884868: TGF-beta inhibitors
6-(4-(3-chloro-4-fluorophenyl)-1-(2-hydroyxethyl)-1H- imidazol-5-yl)imidazo[1,2-b]pyridazine-3-carboxamideIC500.7 nMUS-9884868: TGF-beta inhibitors

ChEMBL bioactivities

440 potent at pChembl≥5 of 470 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.51IC500.31nMCHEMBL4791414
9.25IC500.56nMCHEMBL4758580
9.21IC500.61nMCHEMBL4787891
9.08IC500.83nMCHEMBL4751832
9.00IC501nMCHEMBL4752199
9.00IC501nMCHEMBL4748097
8.96IC501.1nMCHEMBL4779273
8.92IC501.2nMCHEMBL4782729
8.86IC501.37nMCHEMBL2385579
8.82IC501.5nMCHEMBL4741185
8.80IC501.6nMCHEMBL4744618
8.70IC502nMCHEMBL4764221
8.54IC502.9nMCHEMBL4779579
8.54IC502.9nMCHEMBL4763627
8.48IC503.3nMCHEMBL4764416
8.44IC503.6nMCHEMBL4749061
8.43IC503.7nMCHEMBL4744988
8.41IC503.9nMCHEMBL4795223
8.30IC505nMCHEMBL4798505
8.18Kd6.662nMCHEMBL5653589
8.15IC507nMCHEMBL4289841
8.15IC507nMCHEMBL4747422
8.10IC507.9nMCHEMBL4777071
8.05ED508.855nMCHEMBL5653589
7.84IC5014.5nMCHEMBL5438171
7.82IC5015nMCHEMBL2385596
7.82IC5015nMCHEMBL4750258
7.82IC5015nMCHEMBL5793463
7.80IC5016nMCHEMBL2385600
7.80IC5016nMCHEMBL5769608
7.58IC5026nMCHEMBL2385582
7.58IC5026nMCHEMBL6009545
7.44IC5036nMCHEMBL4763122
7.42IC5038nMCHEMBL2385586
7.40IC5040nMCHEMBL4279160
7.30IC5050nMCHEMBL6037875
7.29IC5051nMCHEMBL5972103
7.27Kd54nMERKi
7.18IC5066nMSB-431542
7.18IC5066nMCHEMBL5826016
7.16IC5070nMCHEMBL5987546
7.12IC5075nMCHEMBL4783244
7.11IC5077nMCHEMBL4205311
7.10Kd80nMRGB-286638
7.10IC5080nMCHEMBL4205311
7.10IC5080nMCHEMBL5991561
7.08IC5084nMCHEMBL6006740
7.00IC50100nMCHEMBL5866274
7.00IC50100nMCHEMBL5969135
6.99IC50102.9nMDORSOMORPHIN

PubChem BioAssay actives

171 with measured affinity, of 746 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
1-[3-(2-cyclopropyloxy-4-pyridinyl)-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl]oxy-2-methylpropan-2-ol1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0003uM
6-methoxy-5-(1-methylpyrazol-4-yl)-3-(2-propan-2-yloxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0006uM
3-(2-cyclobutyloxy-4-pyridinyl)-6-methoxy-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0006uM
4-[3-(2-cyclopropyloxy-4-pyridinyl)-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl]oxy-2-methylbutan-2-ol1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0008uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0010uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-5-propan-2-ylpyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0010uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-N-methylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0010uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-5-(oxolan-3-yl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0011uM
5-cyclopentyl-6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0012uM
4-[4-[3-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl]phenyl]morpholine750124: Inhibition of TGFBR2 (unknown origin)ic500.0014uM
6-ethyl-3-(2-methoxy-4-pyridinyl)-N-methylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0015uM
3-(2-cyclopropyloxy-4-pyridinyl)-6-methoxy-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0016uM
5-[3-(2-cyclopropyloxy-4-pyridinyl)-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidin-6-yl]oxy-2-methylpentan-2-ol1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0020uM
5-[6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidin-5-yl]-3-methyl-1,2-oxazole1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0029uM
3-(2-methoxy-4-pyridinyl)-N,6-dimethylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0029uM
5-[(3S)-5,5-dimethyloxolan-3-yl]-6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0030uM
6-ethenyl-3-(2-methoxy-4-pyridinyl)-N-methylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0030uM
2-[6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidin-5-yl]propan-2-ol1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0033uM
5-[(3R)-5,5-dimethyloxolan-3-yl]-6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0036uM
6-cyclopropyl-3-(2-methoxy-4-pyridinyl)-N-methylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0037uM
3-(2-methoxy-4-pyridinyl)-N-methylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0039uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-5-methylpyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0050uM
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149579: Binding affinity to human TGFBR2 incubated for 45 mins by Kinobead based pull down assaykd0.0067uM
N-[4-[3-(6-fluoro-3-pyridinyl)-1H-pyrrolo[3,2-b]pyridin-2-yl]-2-pyridinyl]acetamide1423793: Inhibition of wild type TGFbetaR2 (unknown origin) kinase domain after 1 hr by HTRF assayic500.0070uM
6-methoxy-3-[2-[(2-methylpropan-2-yl)oxy]-4-pyridinyl]-5-(1-methylpyrazol-4-yl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0070uM
6-methoxy-3-(2-methoxy-4-pyridinyl)-N,N-dimethylpyrazolo[1,5-a]pyrimidin-5-amine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0079uM
4-[5-(1-ethylpyrazol-4-yl)benzimidazol-1-yl]-2,6-dimethoxybenzamide1992756: Inhibition of TGFbetaR2 (unknown origin) autophosphorylation incubated for 45 to 60 mins in presence of ATP by [33P]-gammaATP based Topcount scintillation counting analysisic500.0145uM
6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0150uM
4-[6-[4-(4-methylpiperazin-1-yl)phenyl]pyrazolo[1,5-a]pyrimidin-3-yl]quinoline750124: Inhibition of TGFBR2 (unknown origin)ic500.0150uM
6-(4-methoxyphenyl)-3-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidine750124: Inhibition of TGFBR2 (unknown origin)ic500.0160uM
4-[4-(3-quinolin-4-ylpyrazolo[1,5-a]pyrimidin-6-yl)phenyl]morpholine750124: Inhibition of TGFBR2 (unknown origin)ic500.0260uM
5-ethyl-6-methoxy-3-(2-methoxy-4-pyridinyl)pyrazolo[1,5-a]pyrimidine1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0360uM
6-(4-piperazin-1-ylphenyl)-3-(1H-pyrazol-4-yl)pyrazolo[1,5-a]pyrimidine750124: Inhibition of TGFBR2 (unknown origin)ic500.0380uM
N-[4-[3-(6-methoxy-3-pyridinyl)-1H-pyrrolo[3,2-b]pyridin-2-yl]-2-pyridinyl]acetamide1423793: Inhibition of wild type TGFbetaR2 (unknown origin) kinase domain after 1 hr by HTRF assayic500.0400uM
4-[4-(1,3-benzodioxol-5-yl)-5-pyridin-2-yl-1H-imidazol-2-yl]benzamide709642: Inhibition of TGBR2 signaling in human HEK293T cells assessed as inhibition of SMAD activation after 2 to 22 hrs by dual Luciferase Assayic500.0660uM
7,10-dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.12,6.017,20]docosa-1(20),2(22),3,5,14(21),15,18-heptaene1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.0750uM
2-pyridin-2-yl-N-pyridin-4-ylpyrrolo[2,1-f][1,2,4]triazin-4-amine1374245: Inhibition of wild type His-tagged TGFbetaR2 (unknown origin) after 1 hr by HTRF assayic500.0770uM
1-[3-[4-[[4-(2-methoxyethyl)piperazin-1-yl]methyl]phenyl]-4-oxo-1H-indeno[2,1-d]pyrazol-5-yl]-3-morpholin-4-ylurea1425197: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0800uM
6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine750124: Inhibition of TGFBR2 (unknown origin)ic500.1029uM
5-[(3,5-dimethoxyphenyl)methylcarbamoylamino]-3-(pyridin-3-ylmethoxy)-1,2-thiazole-4-carboxamide1709860: Inhibition of TGFbeta receptor 2 (unknown origin) using biotin-labelled TTLKDLIYDMTTSGSGSGLPLLVQRTIARTsubstrate in presence of [gamma33P] ATP measured after 50 minic500.1100uM
N-(3-fluoro-4-pyridinyl)-2-pyridin-2-ylpyrrolo[2,1-f][1,2,4]triazin-4-amine1374245: Inhibition of wild type His-tagged TGFbetaR2 (unknown origin) after 1 hr by HTRF assayic500.1100uM
4-[6-(4-piperazin-1-ylphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline750124: Inhibition of TGFBR2 (unknown origin)ic500.1404uM
2-amino-2-cyclohexyl-N-[2-(1-methylpyrazol-4-yl)-9-oxo-3,10,11-triazatricyclo[6.4.1.04,13]trideca-1,4,6,8(13),11-pentaen-6-yl]acetamide1425197: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.1460uM
2-methylpropyl 4-(4-tert-butylphenyl)-2-methyl-5-oxo-7-propyl-4,6,7,8-tetrahydro-1H-quinoline-3-carboxylate709642: Inhibition of TGBR2 signaling in human HEK293T cells assessed as inhibition of SMAD activation after 2 to 22 hrs by dual Luciferase Assayic500.1700uM
ethyl 4-(4-tert-butylphenyl)-2-methyl-5-oxo-7-propyl-4,6,7,8-tetrahydro-1H-quinoline-3-carboxylate709642: Inhibition of TGBR2 signaling in human HEK293T cells assessed as inhibition of SMAD activation after 2 to 22 hrs by dual Luciferase Assayic500.1700uM
6,8-difluoro-2-methyl-4-[7-(4-piperazin-1-ylphenyl)imidazo[1,2-a]pyridin-3-yl]quinoline1722089: Inhibition of human TGFBR2 using MBP as substrate by [gamma-33P]-ATP assayic500.1707uM
4-[2-[4-(2-pyridin-2-yl-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)quinolin-7-yl]oxyethyl]morpholine1374245: Inhibition of wild type His-tagged TGFbetaR2 (unknown origin) after 1 hr by HTRF assayic500.1900uM
4-[6-(4-methoxyphenyl)pyrazolo[1,5-a]pyrimidin-3-yl]quinoline750124: Inhibition of TGFBR2 (unknown origin)ic500.2360uM
2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol624909: Binding constant for TGFBR2 kinase domainkd0.2500uM
5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine624909: Binding constant for TGFBR2 kinase domainkd0.2500uM

CTD chemical–gene interactions

110 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Tobacco Smoke Pollutionaffects reaction, decreases expression, increases expression, increases methylation5
Benzo(a)pyrenedecreases methylation, increases expression, decreases expression4
Arsenic Trioxideaffects cotreatment, decreases expression3
Dexamethasoneincreases expression, affects cotreatment3
Cadmium Chloridedecreases expression, increases expression3
Particulate Matterdecreases expression, increases abundance, affects cotreatment3
bisphenol Adecreases expression, affects cotreatment, increases expression2
sodium arsenitedecreases expression2
chloropicrindecreases expression2
Resveratroldecreases reaction, increases expression2
Arsenicaffects expression, affects methylation2
Estradiolincreases expression, decreases expression, affects cotreatment2
Lipopolysaccharidesdecreases reaction, increases expression, affects reaction, increases secretion, increases reaction (+3 more)2
Quercetinincreases expression, decreases expression2
Rotenonedecreases expression2
Tretinoindecreases expression, increases expression2
Aflatoxin B1affects cotreatment, decreases expression2
GSK-J4increases expression1
FR900359increases phosphorylation1
moringindecreases expression, increases expression1
methylmercuric chloridedecreases expression1
deoxynivalenoldecreases expression1
methylselenic acidincreases expression1
tolfenamic acidaffects reaction, decreases expression, decreases reaction1
trichostatin Aaffects binding, increases reaction, increases expression1
beta-lapachonedecreases expression1
cobaltous chloridedecreases expression1
perfluorooctanoic aciddecreases expression1
ochratoxin Adecreases expression1
benzo(e)pyreneincreases methylation1

ChEMBL screening assays

188 unique, capped per target: 188 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1045670BindingBinding affinity to TGFBR2 assessed as percentage of kinase remaining bound to the bead at 1 uM by T7 phage display based binding assayStructure-based optimization of potent and selective inhibitors of the tyrosine kinase erythropoietin producing human hepatocellular carcinoma receptor B4 (EphB4). — J Med Chem

Cellosaurus cell lines

2,190 cell lines: 2,185 cancer cell line, 3 embryonic stem cell, 1 transformed cell line, 1 induced pluripotent stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_0248DLD-1Cancer cell lineMale
CVCL_0291HCT 116Cancer cell lineMale
CVCL_0397LS180Cancer cell lineFemale
CVCL_0399LoVoCancer cell lineMale
CVCL_0504RKOCancer cell lineSex unspecified
CVCL_1331KM12Cancer cell lineMale
CVCL_1724SW48Cancer cell lineFemale
CVCL_1Q94H414Cancer cell lineMale
CVCL_1Q95H414-LIG4(+/-)Cancer cell lineMale
CVCL_1Q96H414-MDC1(+/-)Cancer cell lineMale

Clinical trials (associated diseases)

309 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00411970PHASE4COMPLETED20- Versus 23- Gauge System for Pars Plana Vitrectomy
NCT00496405PHASE4WITHDRAWNUnilateral Bevacizumab for Bilateral Diabetic Macular Edema
NCT00677664PHASE4UNKNOWNEffects of Copaxone in the Retinal Function in Diabetic Patients After Panphotocoagulation
NCT01223612PHASE4COMPLETEDLucentis (Ranibizumab) in Diabetic Macular Oedema: a Treatment Evaluation
NCT01225653PHASE4COMPLETEDTopical Application of Latanoprost in Diabetic Retinopathy
NCT01257815PHASE4COMPLETEDRanibizumab Treatment of Diabetic Macular Oedema With Bimonthly Monitoring After a Phase of Initial Treatment
NCT01306981PHASE4COMPLETEDRanibizumab in Diabetic Vitrectomy. A Prospective, Randomised Controlled Trial of Ranibizumab Pre-treatment in Diabetic Vitrectomy - a Pilot Study
NCT01382498PHASE4UNKNOWNEffect of Doxium on High Sensitivity CRP and Endothelin-1 Serum Levels in Patients With Diabetic Retinopathy
NCT01504724PHASE4COMPLETEDEffect of the Adjunctive IVB Before PRP
NCT01591902PHASE4TERMINATEDDiabetic Retinopathy in HIV Subjects Treated With EGRIFTA®
NCT01824043PHASE4UNKNOWNUse of Intravitreal Ranibizumab in the Treatment of Vitreous Hemorrhage
NCT01927315PHASE4COMPLETEDEffects of Fenofibrate on Endothelial Progenitor Cells in Diabetes
NCT02249897PHASE4COMPLETEDPRELIMINARY EVALUATION OF PHARMACOLOGICAL LOWERING OF AGEs
NCT02366468PHASE4COMPLETEDStudy of Efficacy of Ranibizumab in Different Regimens in Patients With Diabetic Macula Edema
NCT02432547PHASE4COMPLETEDLaser Therapy Combined With Intravitreal Aflibercept vs Intravitreal Aflibercept Monotherapy (LADAMO)
NCT02559180PHASE4COMPLETEDTreatment of Diabetic Macular Edema With Aflibercept in Subjects Previously Treated With Ranibizumab or Bevacizumab
NCT02647515PHASE4COMPLETEDIntravitreal Ranibizumab Injection as Adjuvant in the Treatment of Postvitrectomy Diabetic Vitreous Hemorrhage Accompanied by Neovascular Glaucoma
NCT02874313PHASE4COMPLETEDCPAP Effect on the Progression of Diabetic Retinopathy in Patients With Sleep Apnea
NCT03439345PHASE4COMPLETEDLowering Events in Non-proliferative Retinopathy in Scotland
NCT03453281PHASE4COMPLETEDEarly Anatomical, Physiological, and Clinical Changes in Diabetic Macular Edema After Intravitreal Aflibercept Injection
NCT03962296PHASE4COMPLETEDA Multicenter, Randomized, Double-blind Non-inferiority Trial to Evaluate the Efficacy and Safety of Entelon®
NCT04018482PHASE4COMPLETEDPovidone Iodine vs AVEnova: A Pre-injection Disinfection Study (PAVE Study)
NCT04038125PHASE4UNKNOWNIncrease in Capillary Plexus Density Level Following the Use of Ozurdex for the Treatment of DME
NCT04140201PHASE4UNKNOWNEffect of Lipid Lowering Agents on Diabetic Retinopathy and Cardiovascular Risk of Diabetic Patients
NCT04215445PHASE4UNKNOWNEffect of SGLT2 Inhibition on OCT-A Parameters in Diabetic CKD
NCT04283162PHASE4UNKNOWNUsing Calcium Dobesilate to Treat Chinese Patients With Mild to Moderate Non-proliferative Diabetic Retinopathy
NCT04359771PHASE4COMPLETEDTransfoveal Micropulse Laser for Center Involving Diabetic Macular Edema
NCT04448496PHASE4UNKNOWNProspective Trial of Dexamethasone implAnt for Treatment Naïve diabeTic Macular Edema
NCT04619303PHASE4COMPLETEDIntravitreal Dexamethasone vs Bevacizumab in Aboriginal People With DMO
NCT04674254PHASE4COMPLETEDMacular Perfusion Changes After Anti-VEGF Versus Targeted Retinal Photocoagulation in Proliferative Diabetic Retinopathy
NCT04708145PHASE4COMPLETEDLong-Term Efficacy and Safety of Intravitreal Aflibercept Injections for the Treatment of Diabetic Retinopathy for Subjects Who Completed the 2-Year PANORAMA Trial
NCT04991350PHASE4TERMINATEDEffect of Ranibizumab Versus Bevacizumab on the Macular Perfusion in Diabetic Macular Edema
NCT05386160PHASE4UNKNOWNPhacoemulsification Combined With Intravitreal Injection of Ranibizumab Prevent Postoperative Capillary Non-perfusion Zone Progress in Non-proliferative Diabetic Retinopathy
NCT06191094PHASE4ENROLLING_BY_INVITATIONPre-operative Vabysmo in Patients With Non-clearing Vitreous Hemorrhage Secondary to Proliferative Diabetic Retinopathy
NCT06660940PHASE4NOT_YET_RECRUITINGClinical Trial of Keluoxin Capsules in the Treatment of Diabetic Kidney Disease with Diabetic Retinopathy
NCT06708637PHASE4COMPLETEDOcular Safety and Usability Study for FYB203 PFS
NCT07090044PHASE4COMPLETEDComparing Post-intravitreal Injection Pain Scores Using Loteprednol, Bromfenac Sodium, and Artificial Tears Over a 24-hour Period
NCT07301775PHASE4NOT_YET_RECRUITINGComparing Single Versus Multiple Anti-VEGF Injections in Diabetic Patients Undergoing Cataract Surgery
NCT07456826PHASE4ENROLLING_BY_INVITATIONStudy Evaluating the Efficacy and Safety of Chloroprocaine HCl Ophthalmic Gel 3% vs Proparacaine Ophthalmic Solution 0.5% Plus Subconjunctival Lidocaine in Patients Undergoing Intravitreal Injections
NCT00000151PHASE3COMPLETEDEarly Treatment Diabetic Retinopathy Study (ETDRS)