TGM4
geneOn this page
Also known as TGP
Summary
TGM4 (transglutaminase 4, HGNC:11780) is a protein-coding gene on chromosome 3p21.31, encoding Protein-glutamine gamma-glutamyltransferase 4 (P49221). Associated with the mammalian reproductive process.
Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to act upstream of or within mating plug formation. Located in Golgi apparatus and collagen-containing extracellular matrix.
Source: NCBI Gene 7047 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 109 total — 1 likely-pathogenic
- MANE Select transcript:
NM_003241
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11780 |
| Approved symbol | TGM4 |
| Name | transglutaminase 4 |
| Location | 3p21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TGP |
| Ensembl gene | ENSG00000163810 |
| Ensembl biotype | protein_coding |
| OMIM | 600585 |
| Entrez | 7047 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 3 retained_intron, 2 protein_coding, 1 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000296125, ENST00000422219, ENST00000459830, ENST00000471637, ENST00000490928, ENST00000495844, ENST00000705784
RefSeq mRNA: 1 — MANE Select: NM_003241
NM_003241
CCDS: CCDS2723
Canonical transcript exons
ENST00000296125 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001078512 | 44887689 | 44887795 |
| ENSE00001614094 | 44901793 | 44901931 |
| ENSE00001619821 | 44903884 | 44903987 |
| ENSE00001648274 | 44910958 | 44911127 |
| ENSE00001655997 | 44906949 | 44907200 |
| ENSE00001699086 | 44901524 | 44901698 |
| ENSE00001717266 | 44910090 | 44910368 |
| ENSE00001755070 | 44911270 | 44911406 |
| ENSE00001893162 | 44874608 | 44874697 |
| ENSE00003476227 | 44893577 | 44893695 |
| ENSE00003506971 | 44890603 | 44890732 |
| ENSE00003547487 | 44885325 | 44885498 |
| ENSE00003577279 | 44896709 | 44896816 |
| ENSE00003994158 | 44913584 | 44914990 |
Expression profiles
Bgee: expression breadth broad, 100 present calls, max score 84.94.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0536 / max 41.9902, expressed in 6 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 36351 | 0.0536 | 6 |
Top tissues by expression
123 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.94 | gold quality |
| prostate gland | UBERON:0002367 | 81.06 | gold quality |
| bone marrow | UBERON:0002371 | 60.69 | gold quality |
| bone marrow cell | CL:0002092 | 59.67 | gold quality |
| monocyte | CL:0000576 | 58.37 | gold quality |
| leukocyte | CL:0000738 | 57.94 | gold quality |
| vermiform appendix | UBERON:0001154 | 56.97 | gold quality |
| granulocyte | CL:0000094 | 56.06 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 53.73 | gold quality |
| right testis | UBERON:0004534 | 52.96 | gold quality |
| testis | UBERON:0000473 | 51.99 | gold quality |
| left testis | UBERON:0004533 | 51.79 | gold quality |
| right coronary artery | UBERON:0001625 | 49.82 | gold quality |
| right adrenal gland | UBERON:0001233 | 49.37 | gold quality |
| adrenal gland | UBERON:0002369 | 48.08 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 47.94 | gold quality |
| left adrenal gland | UBERON:0001234 | 47.30 | gold quality |
| endocervix | UBERON:0000458 | 46.12 | gold quality |
| gastrocnemius | UBERON:0001388 | 46.06 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 45.85 | silver quality |
| tonsil | UBERON:0002372 | 45.22 | gold quality |
| blood | UBERON:0000178 | 45.19 | gold quality |
| ectocervix | UBERON:0012249 | 45.14 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 44.95 | gold quality |
| muscle of leg | UBERON:0001383 | 44.92 | gold quality |
| skin of abdomen | UBERON:0001416 | 44.85 | gold quality |
| uterine cervix | UBERON:0000002 | 43.95 | gold quality |
| muscle tissue | UBERON:0002385 | 43.69 | silver quality |
| zone of skin | UBERON:0000014 | 43.60 | gold quality |
| ventricular zone | UBERON:0003053 | 43.27 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.16 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): RARG, SP1, SP3
miRNA regulators (miRDB)
46 targeting TGM4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4650-5P | 99.98 | 64.69 | 999 |
| HSA-MIR-9-3P | 99.96 | 70.88 | 2068 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-3681-5P | 99.82 | 66.88 | 387 |
| HSA-MIR-4766-5P | 99.75 | 69.23 | 2662 |
| HSA-MIR-6762-3P | 99.66 | 66.94 | 1188 |
| HSA-MIR-18A-3P | 99.56 | 65.68 | 1092 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-4728-3P | 99.47 | 68.94 | 981 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-5580-5P | 99.38 | 66.96 | 1139 |
| HSA-MIR-3085-3P | 99.26 | 66.16 | 1490 |
| HSA-MIR-149-5P | 99.25 | 67.16 | 1315 |
| HSA-MIR-4784 | 99.15 | 67.41 | 1733 |
| HSA-MIR-4270 | 99.02 | 66.26 | 1987 |
| HSA-MIR-1304-5P | 98.90 | 68.58 | 1054 |
| HSA-MIR-3150B-3P | 98.81 | 67.21 | 1728 |
| HSA-MIR-5006-5P | 98.79 | 66.92 | 1246 |
| HSA-MIR-4297 | 98.77 | 66.95 | 2013 |
| HSA-MIR-4725-5P | 98.67 | 65.42 | 628 |
| HSA-MIR-504-5P | 98.67 | 65.40 | 631 |
| HSA-MIR-6754-5P | 98.60 | 65.54 | 1627 |
| HSA-MIR-518C-5P | 98.53 | 69.20 | 1640 |
| HSA-MIR-4266 | 98.53 | 67.29 | 1035 |
| HSA-MIR-628-5P | 98.36 | 67.74 | 844 |
| HSA-MIR-4733-3P | 98.35 | 65.20 | 994 |
| HSA-MIR-4436B-3P | 98.25 | 65.26 | 1494 |
| HSA-MIR-4457 | 98.09 | 67.12 | 1274 |
Literature-anchored findings (GeneRIF, showing 12)
- transglutaminase 4 has a relatively wide profile of expression in human cancer cell lines (PMID:17552366)
- TGase-4 plays a pivotal role in the interaction between endothelial cells and prostate cancer cells, an action which is independent of the ROCK pathway. (PMID:18983858)
- The expression status of human transglutaminase 4 in benign prostate hyperplasia (BPH) and prostate cancer was analyzed. (PMID:20177144)
- TGase-4 expression is intrinsically linked to the activation of RON in prostate cancer cells and that this autoactivation of RON contributes to the increased cell motility in TGase-4 expressing cells. (PMID:20596668)
- The presence of TGase-4 has a biological impact on a prostate cancer cell’s response to MDA-7. (PMID:21524313)
- CDKN2A, GATA3, CREBBP, ITGA2, NBL1 and TGM4 were down-regulated in the prostate carcinoma glands compared to the corresponding normal glands (PMID:21743959)
- Evidence that the retinoic acid receptor gamma plays a major role in the regulation of the hTGP gene and that presence of the androgen receptor, but not its transcriptional transactivation activity, is critical for hTGP transcription. (PMID:22362749)
- indicated that transglutaminase 4 may serve as a potential predictor of biochemical recurrence of prostate cancer (PMID:23974364)
- TGM4 is a prostatic secretory molecule with critical role in male reproduction. (PMID:26084804)
- TGM4 is elevated in the seminal plasma of prostate cancer patients. (PMID:31249104)
- Biochemical Characterisation of Human Transglutaminase 4. (PMID:34830327)
- Transglutaminase-4 (Prostate Transglutaminase), a Potential Biological Factor and Clinical Indicator for the Diagnosis and Prognosis of Prostate Cancer. (PMID:36585193)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Tgm4 | ENSMUSG00000025787 |
| rattus_norvegicus | Tgm4 | ENSRNOG00000004320 |
| drosophila_melanogaster | Tg | FBGN0031975 |
Paralogs (8): TGM1 (ENSG00000092295), TGM5 (ENSG00000104055), F13A1 (ENSG00000124491), TGM3 (ENSG00000125780), TGM7 (ENSG00000159495), EPB42 (ENSG00000166947), TGM6 (ENSG00000166948), TGM2 (ENSG00000198959)
Protein
Protein identifiers
Protein-glutamine gamma-glutamyltransferase 4 — P49221 (reviewed: P49221)
Alternative names: Fibrinoligase, Prostate transglutaminase, Prostate-specific transglutaminase, Transglutaminase P, Transglutaminase-4
All UniProt accessions (3): A0A994J576, P49221, F8WCU8
UniProt curated annotations — full annotation on UniProt →
Function. Associated with the mammalian reproductive process. Catalyzes the cross-linking of proteins and the conjugation of polyamines to specific proteins in the seminal tract.
Subunit / interactions. Homodimer.
Tissue specificity. Prostate.
Cofactor. Binds 1 Ca(2+) ion per subunit.
Similarity. Belongs to the transglutaminase superfamily. Transglutaminase family.
RefSeq proteins (1): NP_003232* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001102 | Transglutaminase_N | Domain |
| IPR002931 | Transglutaminase-like | Domain |
| IPR008958 | Transglutaminase_C | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR013808 | Transglutaminase_AS | Active_site |
| IPR014756 | Ig_E-set | Homologous_superfamily |
| IPR023608 | Transglutaminase_animal | Family |
| IPR036238 | Transglutaminase_C_sf | Homologous_superfamily |
| IPR036985 | Transglutaminase-like_sf | Homologous_superfamily |
| IPR038765 | Papain-like_cys_pep_sf | Homologous_superfamily |
| IPR050779 | Transglutaminase | Family |
Pfam: PF00868, PF00927, PF01841
Enzyme classification (BRENDA):
- EC 2.3.2.13 — protein-glutamine gamma-glutamyltransferase (BRENDA: 68 organisms, 476 substrates, 772 inhibitors, 122 Km, 49 kcat entries)
Substrate kinetics (BRENDA)
60 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| PUTRESCINE | 0.035–9.63 | 13 |
| L-LYSINE | 2.9–15.8 | 6 |
| N-CBZ-GLN-GLY | 12.83–59.5 | 5 |
| HYDROXYLAMINE | 1.37–61.9 | 4 |
| NALPHA-BENZYLOXYCARBONYL-L-GLN-GLY | 11.2–30 | 4 |
| CASEIN | 0.006–0.012 | 3 |
| CBZ-GLN-GLY | 0.0169–5.9 | 3 |
| CBZ-GLN-GLY-OH | 3.53–8.55 | 3 |
| METHYLAMINE | 0.024–0.061 | 3 |
| MONODANSYLCADAVERINE | 0.01–0.034 | 3 |
| N-CARBOXYBENZOYL-L-GLUTAMINYL-GLYCINE | 0.0547–69.4 | 3 |
| PENTYLAMINE | 0.0029–0.0203 | 3 |
| Z-GLN-GLY | 1.8–11.6 | 3 |
| ACETYL-ALPHAS1-CASEIN | 0.0029–0.0032 | 2 |
| GTP | 0.0044–0.01 | 2 |
Catalyzed reactions (Rhea), 1 shown:
- L-glutaminyl-[protein] + L-lysyl-[protein] = [protein]-L-lysyl-N(6)-5-L-glutamyl-[protein] + NH4(+) (RHEA:54816)
UniProt features (18 total): sequence variant 9, binding site 4, active site 3, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P49221-F1 | 92.09 | 0.74 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (3): 268; 327; 350
Ligand- & substrate-binding residues (4): 390; 392; 442; 447
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 62 (showing top):
GOBP_PEPTIDE_CROSS_LINKING, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, AML_Q6, OCT1_03, MODULE_88, AACTTT_UNKNOWN, MODULE_95, YNGTTNNNATT_UNKNOWN, MODULE_55, GOMF_ACYLTRANSFERASE_ACTIVITY, GOMF_AMINOACYLTRANSFERASE_ACTIVITY, GSE13762_CTRL_VS_125_VITAMIND_DAY12_DC_DN, MODULE_49, RATTENBACHER_BOUND_BY_CELF1, GOMF_PROTEIN_GLUTAMINE_GAMMA_GLUTAMYLTRANSFERASE_ACTIVITY
GO Biological Process (1): peptide cross-linking (GO:0018149)
GO Molecular Function (4): protein-glutamine gamma-glutamyltransferase activity (GO:0003810), metal ion binding (GO:0046872), transferase activity (GO:0016740), acyltransferase activity (GO:0016746)
GO Cellular Component (4): cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), extracellular matrix (GO:0031012), extracellular exosome (GO:0070062)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein modification process | 1 |
| aminoacyltransferase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| cation binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| external encapsulating structure | 1 |
| extracellular vesicle | 1 |
Protein interactions and networks
STRING
790 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TGM4 | ACP3 | P15309 | 882 |
| TGM4 | KLK2 | P20151 | 842 |
| TGM4 | MSMB | P08118 | 836 |
| TGM4 | KLKB1 | P03952 | 826 |
| TGM4 | KLK3 | P07288 | 804 |
| TGM4 | STEAP2 | Q8NFT2 | 720 |
| TGM4 | SEMG1 | P04279 | 691 |
| TGM4 | PATE4 | P0C8F1 | 678 |
| TGM4 | GBA1 | P04062 | 669 |
| TGM4 | STEAP4 | Q687X5 | 649 |
| TGM4 | SYT7 | O43581 | 634 |
| TGM4 | PRM2 | P04554 | 597 |
| TGM4 | SEMG2 | Q02383 | 570 |
| TGM4 | KCNRG | Q8N5I3 | 514 |
| TGM4 | PDILT | Q8N807 | 512 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TGM4 | DDHD2 | psi-mi:“MI:0914”(association) | 0.530 |
| IGHA1 | PLG | psi-mi:“MI:0914”(association) | 0.350 |
| IGHG1 | PDPK1 | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF418 | ZNF195 | psi-mi:“MI:0914”(association) | 0.350 |
| DHH | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| RDH11 | FN1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (10): GAB2 (Affinity Capture-MS), DDHD2 (Affinity Capture-MS), TGM4 (Affinity Capture-MS), TBC1D14 (Affinity Capture-MS), GAB2 (Affinity Capture-MS), DDHD2 (Affinity Capture-MS), TGM4 (Affinity Capture-MS), LRCH2 (Affinity Capture-MS), TGM4 (Affinity Capture-MS), TGM4 (Affinity Capture-MS)
ESM2 similar proteins: A0A140LIF8, A0A2P1BRP3, A0A2P1BRQ0, A0ZSK3, A0ZSK4, A1L314, A8MT19, A8MVJ9, C6FG12, E7F9T0, O81025, P27473, P49221, P58069, Q0GUM3, Q1LYL8, Q1MT80, Q2EMV9, Q3T9E4, Q3UW68, Q4ADG6, Q4ADG7, Q53G44, Q5K651, Q5U311, Q60462, Q60766, Q62293, Q63713, Q66S13, Q66S21, Q66S25, Q69Z37, Q6AYC2, Q84WJ0, Q8BV66, Q8BWR8, Q8CBA2, Q8IVG5, Q8N8V2
Diamond homologs: A6QP57, D4A5U3, O08619, O43548, O46510, O95932, P00488, P08587, P16452, P21980, P21981, P22735, P22758, P23606, P49221, P51176, P52181, P52183, Q01841, Q05187, Q08188, Q08189, Q8BH61, Q8BZH1, Q96PF1, Q99041, Q9D7I9, Q9GLK0, Q9JLF6, Q9WVJ6, P49222, P12260
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
109 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 93 |
| Likely benign | 5 |
| Benign | 4 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1184858 | NM_003241.4(TGM4):c.806G>A (p.Trp269Ter) | Likely pathogenic |
SpliceAI
2602 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:44874696:AGG:A | donor_loss | 1.0000 |
| 3:44874698:G:GA | donor_loss | 1.0000 |
| 3:44885303:A:AG | acceptor_gain | 1.0000 |
| 3:44885303:ACAT:A | acceptor_gain | 1.0000 |
| 3:44885305:A:AG | acceptor_gain | 1.0000 |
| 3:44885305:AT:A | acceptor_gain | 1.0000 |
| 3:44885305:ATGT:A | acceptor_gain | 1.0000 |
| 3:44885306:T:G | acceptor_gain | 1.0000 |
| 3:44885306:T:TA | acceptor_gain | 1.0000 |
| 3:44885308:T:TA | acceptor_gain | 1.0000 |
| 3:44887792:AGAGG:A | donor_loss | 1.0000 |
| 3:44887793:GAG:G | donor_gain | 1.0000 |
| 3:44887793:GAGGT:G | donor_loss | 1.0000 |
| 3:44887796:G:T | donor_loss | 1.0000 |
| 3:44887797:T:G | donor_loss | 1.0000 |
| 3:44896707:A:AG | acceptor_gain | 1.0000 |
| 3:44896708:G:GG | acceptor_gain | 1.0000 |
| 3:44901910:G:GG | donor_gain | 1.0000 |
| 3:44907180:A:G | donor_gain | 1.0000 |
| 3:44910956:A:AG | acceptor_gain | 1.0000 |
| 3:44910957:G:GT | acceptor_gain | 1.0000 |
| 3:44910957:GT:G | acceptor_gain | 1.0000 |
| 3:44911086:G:GT | donor_gain | 1.0000 |
| 3:44911124:AGAGG:A | donor_loss | 1.0000 |
| 3:44911125:GAG:G | donor_gain | 1.0000 |
| 3:44911125:GAGGT:G | donor_loss | 1.0000 |
| 3:44911128:G:GA | donor_loss | 1.0000 |
| 3:44911129:T:G | donor_loss | 1.0000 |
| 3:44911269:GTT:G | acceptor_gain | 1.0000 |
| 3:44874698:G:GG | donor_gain | 0.9900 |
AlphaMissense
4539 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:44903888:T:C | F326L | 0.995 |
| 3:44903890:C:A | F326L | 0.995 |
| 3:44903890:C:G | F326L | 0.995 |
| 3:44901834:T:C | F292L | 0.992 |
| 3:44901836:C:A | F292L | 0.992 |
| 3:44901836:C:G | F292L | 0.992 |
| 3:44890621:A:C | S107R | 0.991 |
| 3:44890623:T:A | S107R | 0.991 |
| 3:44890623:T:G | S107R | 0.991 |
| 3:44901611:A:C | S249R | 0.991 |
| 3:44901613:T:A | S249R | 0.991 |
| 3:44901613:T:G | S249R | 0.991 |
| 3:44890616:T:A | V105D | 0.990 |
| 3:44907137:A:C | S422R | 0.989 |
| 3:44907139:C:A | S422R | 0.989 |
| 3:44907139:C:G | S422R | 0.989 |
| 3:44907190:G:C | K439N | 0.989 |
| 3:44907190:G:T | K439N | 0.989 |
| 3:44893579:G:C | D145H | 0.986 |
| 3:44893681:T:A | W179R | 0.986 |
| 3:44893681:T:C | W179R | 0.986 |
| 3:44901659:T:C | F265L | 0.986 |
| 3:44901661:T:A | F265L | 0.986 |
| 3:44901661:T:G | F265L | 0.986 |
| 3:44890719:C:A | N139K | 0.983 |
| 3:44890719:C:G | N139K | 0.983 |
| 3:44901602:T:A | W246R | 0.983 |
| 3:44901602:T:C | W246R | 0.983 |
| 3:44901930:T:A | W324R | 0.983 |
| 3:44901930:T:C | W324R | 0.983 |
dbSNP variants (sampled 300 via entrez): RS1000010685 (3:44901274 T>C), RS1000241473 (3:44879268 T>C), RS1000287450 (3:44895596 G>A), RS1000295817 (3:44891539 A>G), RS1000541892 (3:44877439 C>G), RS1000575454 (3:44895881 G>A), RS1000584243 (3:44880240 G>A), RS1000652271 (3:44912827 A>C), RS1000728206 (3:44887043 G>A), RS1000759376 (3:44877659 A>C), RS1001002211 (3:44896894 A>ACTGTAAGCT), RS1001047600 (3:44874089 C>G), RS1001085733 (3:44905901 A>G), RS1001266374 (3:44905525 C>T), RS1001288134 (3:44888177 T>C)
Disease associations
OMIM: gene MIM:600585 | disease phenotypes: MIM:190300
GenCC curated gene-disease
Mondo (1): essential tremor (MONDO:0003233)
Orphanet (1): NON RARE IN EUROPE: Hereditary essential tremor (Orphanet:862)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002481_7 | Acne (severe) | 3.000000e-06 |
| GCST007130_1 | Cerebrospinal fluid t-tau:AB1-42 ratio | 5.000000e-09 |
| GCST007666_9 | Depressive symptom improvement | 2.000000e-06 |
| GCST008103_52 | Bipolar disorder | 3.000000e-07 |
| GCST009936_4 | Venous thromboembolism | 8.000000e-06 |
| GCST011541_6 | Tinnitus | 3.000000e-07 |
| GCST90000048_1 | Age at first birth | 1.000000e-09 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007708 | t-tau:beta-amyloid 1-42 ratio measurement |
| EFO:0007006 | depressive symptom measurement |
| EFO:0009101 | age at first birth measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020329 | Essential Tremor | C10.228.662.350 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases expression | 3 |
| aristolochic acid I | increases expression | 1 |
| apocarotenal | increases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| JP8 aviation fuel | increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Calcitriol | decreases expression, affects cotreatment | 1 |
| Drugs, Chinese Herbal | increases expression | 1 |
| Methapyrilene | increases methylation | 1 |
| Naphthoquinones | increases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Testosterone | decreases expression, affects cotreatment | 1 |
| Tretinoin | affects expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | increases expression | 1 |
| beta Carotene | increases expression | 1 |
| Okadaic Acid | increases expression | 1 |
Clinical trials (associated diseases)
235 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00439699 | PHASE4 | COMPLETED | A Pilot Clinical Trial Of Memantine for Essential Tremor |
| NCT00584376 | PHASE4 | COMPLETED | Pregabalin (Lyrica) for the Treatment of Essential Tremor |
| NCT00998660 | PHASE4 | COMPLETED | RECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR) |
| NCT02111369 | PHASE4 | COMPLETED | Propranolol and Botulinum Toxin for Essential Vocal Tremor |
| NCT02495883 | PHASE4 | COMPLETED | Functional Imaging of Tremor Circuits and Mechanisms of Treatment Response |
| NCT00018564 | PHASE3 | COMPLETED | Novel Therapies for Essential Tremor |
| NCT00236496 | PHASE3 | COMPLETED | A Comparison of the Efficacy and Safety of Topiramate Versus Placebo in Treating Tremor of Unknown Cause. |
| NCT01441284 | PHASE3 | WITHDRAWN | Efficacy of Pramipexole Extended Release in the Treatment of Essential Tremor |
| NCT04193527 | PHASE3 | COMPLETED | A Study to Evaluate the Diagnostic Efficacy of DaTSCAN™ Ioflupane (123I) Injection in Single Photon Emission Computed Tomography (SPECT) for the Diagnosis of Parkinsonian Syndrome (PS) in Chinese Patients |
| NCT04265209 | PHASE3 | COMPLETED | [18F] LBT-999 PET Compared to [123I]-FP/CIT SPECT to Distinguish Between Parkinson’s Diseases and Essential Tremor |
| NCT06087276 | PHASE3 | ENROLLING_BY_INVITATION | Essential 3 - Decentralized, Phase 3 Study Evaluating the Safety and Efficacy of Ulixacaltamide in Essential Tremor (ET) |
| NCT00080366 | PHASE2 | COMPLETED | Octanol to Treat Essential Tremor |
| NCT00102596 | PHASE2 | COMPLETED | Clinical Trial Characterizing the Bioavailability of 1-Octanol in Adults With Ethanol-responsive Essential Tremor |
| NCT00223743 | PHASE2 | COMPLETED | A Safety/Efficacy Trial of Zonisamide for Essential Tremor |
| NCT00321087 | PHASE2 | TERMINATED | A Study of T2000 in Essential Tremor |
| NCT00598078 | PHASE2 | COMPLETED | Multiple-dose,Double-blind,Placebo-controlled Study of Sodium Oxybate in Patients With Essential Tremor |
| NCT00655278 | PHASE2 | TERMINATED | T2000 in Essential Tremor - Open Label Continuation |
| NCT01332695 | PHASE2 | COMPLETED | A Pilot Efficacy and Safety Study of ST101 in Essential Tremor |
| NCT02277106 | PHASE2 | COMPLETED | Evaluate SAGE-547 in Participants With Essential Tremor |
| NCT02551848 | PHASE2 | UNKNOWN | Kinematic-based BoNT-A Injections for Bilateral ET |
| NCT02668146 | PHASE2 | UNKNOWN | An Efficacy/Safety Study of Perampanel for Reducing Essential Tremor |
| NCT02978781 | PHASE2 | COMPLETED | A Study to Evaluate SAGE-217 in Participants With Essential Tremor |
| NCT03101241 | PHASE2 | COMPLETED | A Phase 2 RCT Study of CX-8998 for Essential Tremor |
| NCT03688685 | PHASE2 | COMPLETED | A Clinical Study to Evaluate CAD-1883 in Essential Tremor |
| NCT03780426 | PHASE2 | COMPLETED | tSMS in Essential Tremor |
| NCT04305275 | PHASE2 | COMPLETED | A Study to Evaluate the Efficacy, Safety, and Tolerability of SAGE-324 in Participants With Essential Tremor |
| NCT04727658 | PHASE2 | TERMINATED | Linac FRACtionated Radiosurgical THALamotomie in Tremors (FRACTHAL) |
| NCT04880616 | PHASE2 | COMPLETED | Safety, Efficacy, and Tolerability of NBI-827104 for the Treatment of Essential Tremor |
| NCT05021978 | PHASE2 | COMPLETED | A Clinical Trial of PRAX-944 in Participants With Essential Tremor |
| NCT05021991 | PHASE2 | COMPLETED | A Clinical Trial of 2 Doses of PRAX-944 in Participants With Essential Tremor |
| NCT05122650 | PHASE2 | COMPLETED | A Study To Assess the Safety and Efficacy of JZP385 in the Treatment of Adults With Moderate to Severe Essential Tremor (ET) |
| NCT05173012 | PHASE2 | COMPLETED | Study to Evaluate SAGE-324 in Participants With Essential Tremor |
| NCT05387642 | PHASE2 | WITHDRAWN | A Clinical Trial of PRAX-114 in Participants With Essential Tremor |
| NCT06312800 | PHASE2 | WITHDRAWN | Acamprosate and Methazolamide for Essential Tremor |
| NCT06821906 | PHASE2 | RECRUITING | Stereotactic Radiosurgery in the Treatment of Essential Tremor |
| NCT07074002 | PHASE2 | RECRUITING | Proof of Concept Study on BP1.4979 Effect on Essential Tremor |
| NCT07103265 | PHASE2 | NOT_YET_RECRUITING | Developing a New LIFU Neuromodulation Method to Suppress Tremor |
| NCT00001986 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT00016679 | PHASE1 | COMPLETED | 1-Octanol to Treat Essential Tremor |
| NCT01304758 | PHASE1 | COMPLETED | ExAblate Transcranial MR Guided Focused Ultrasound in the Treatment of Essential Tremor |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acne, essential tremor, venous thromboembolism