TGOLN2
gene geneOn this page
Also known as TGN51TGN46TGN48TGN38TTGN2
Summary
TGOLN2 (trans-golgi network protein 2, HGNC:15450) is a protein-coding gene on chromosome 2p11.2, encoding Trans-Golgi network integral membrane protein 2 (O43493). May be involved in regulating membrane traffic to and from trans-Golgi network.
This gene encodes a type I integral membrane protein that is localized to the trans-Golgi network, a major sorting station for secretory and membrane proteins. The encoded protein cycles between early endosomes and the trans-Golgi network, and may play a role in exocytic vesicle formation. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.
Source: NCBI Gene 10618 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 66 total
- Druggable target: yes
- MANE Select transcript:
NM_006464
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15450 |
| Approved symbol | TGOLN2 |
| Name | trans-golgi network protein 2 |
| Location | 2p11.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TGN51, TGN46, TGN48, TGN38, TTGN2 |
| Ensembl gene | ENSG00000152291 |
| Ensembl biotype | protein_coding |
| OMIM | 603062 |
| Entrez | 10618 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 6 protein_coding
ENST00000377386, ENST00000398263, ENST00000409015, ENST00000409232, ENST00000444342, ENST00000971851
RefSeq mRNA: 4 — MANE Select: NM_006464
NM_001206844, NM_001368095, NM_001368096, NM_006464
CCDS: CCDS46351, CCDS56126, CCDS56127, CCDS92789
Canonical transcript exons
ENST00000377386 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001004544 | 85326508 | 85327685 |
| ENSE00001328407 | 85324915 | 85324998 |
| ENSE00001895159 | 85327917 | 85327989 |
| ENSE00001944098 | 85318027 | 85322741 |
Expression profiles
Bgee: expression breadth ubiquitous, 306 present calls, max score 99.36.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 99.2419 / max 698.9366, expressed in 1827 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 29389 | 88.0571 | 1827 |
| 29388 | 8.8791 | 1666 |
| 29391 | 1.2971 | 747 |
| 29390 | 0.9633 | 543 |
| 29381 | 0.0452 | 17 |
Top tissues by expression
307 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| renal medulla | UBERON:0000362 | 99.36 | gold quality |
| parotid gland | UBERON:0001831 | 99.33 | gold quality |
| caput epididymis | UBERON:0004358 | 99.12 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 99.10 | gold quality |
| mammary duct | UBERON:0001765 | 99.07 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 99.00 | gold quality |
| lower lobe of lung | UBERON:0008949 | 98.95 | gold quality |
| corpus epididymis | UBERON:0004359 | 98.94 | gold quality |
| visceral pleura | UBERON:0002401 | 98.84 | gold quality |
| epididymis | UBERON:0001301 | 98.83 | gold quality |
| colonic mucosa | UBERON:0000317 | 98.80 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 98.80 | gold quality |
| jejunal mucosa | UBERON:0000399 | 98.79 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 98.79 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 98.77 | gold quality |
| pylorus | UBERON:0001166 | 98.76 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.71 | gold quality |
| superficial temporal artery | UBERON:0001614 | 98.67 | gold quality |
| blood vessel layer | UBERON:0004797 | 98.67 | gold quality |
| pleura | UBERON:0000977 | 98.64 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 98.64 | gold quality |
| adult organism | UBERON:0007023 | 98.61 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 98.60 | gold quality |
| parietal pleura | UBERON:0002400 | 98.58 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.55 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 98.54 | gold quality |
| medulla oblongata | UBERON:0001896 | 98.53 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 98.53 | gold quality |
| pons | UBERON:0000988 | 98.51 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 98.49 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7606 | no | 1806.07 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
145 targeting TGOLN2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-1193 | 100.00 | 65.93 | 529 |
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-432-3P | 100.00 | 67.86 | 705 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-520G-5P | 99.99 | 66.76 | 658 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-27A-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-27B-3P | 99.98 | 72.13 | 2955 |
| HSA-MIR-9985 | 99.98 | 72.11 | 2939 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-454-3P | 99.91 | 74.01 | 1925 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-130A-3P | 99.90 | 73.31 | 1861 |
| HSA-MIR-130B-3P | 99.90 | 73.27 | 1850 |
| HSA-MIR-301A-3P | 99.90 | 73.15 | 1839 |
| HSA-MIR-301B-3P | 99.90 | 73.19 | 1836 |
| HSA-MIR-3666 | 99.90 | 73.24 | 1833 |
| HSA-MIR-4295 | 99.90 | 73.11 | 1838 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
Literature-anchored findings (GeneRIF, showing 7)
- FXIII-A associated with podosomes & other structures adjacent to the plasma membrane, containing TGN46 & GM130 but not protein disulphide isomerase. FXIII-A was present in GM130-positive intracellular vesicles that could mediate its transport. (PMID:20086247)
- These data have identified different itineraries for the retrograde transport of Shiga toxin and TGN38 and distinct retromer components that regulate the transport of these cargos. (PMID:20138391)
- These analyses do not provide support for the hypothesis that common genetic variation in TGOLN2 contributes significantly to the risk for attempted suicide in subjects with major mood disorders. (PMID:20468057)
- These results indicate that hepatitis E virus (HEV)forms membrane-associated particles in the cytoplasm, and that the released HEV particles with a lipid membrane retain the antigenicity of TGOLN2 on their surface. (PMID:24221250)
- Golgi-58K can re-localize to late endosomes upon cellular uptake of PS-ASOs and facilitates endosomal release of ASOs. (PMID:34244781)
- Sorting of secretory proteins at the trans-Golgi network by human TGN46. (PMID:38466628)
- Whole-exome sequencing reveals an association of rs112065068 in TGOLN2 gene with distant metastasis of non-small cell lung cancer. (PMID:38670394)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tgoln2 | ENSDARG00000102599 |
| mus_musculus | Tgoln1 | ENSMUSG00000056429 |
| rattus_norvegicus | Tgoln2 | ENSRNOG00000014617 |
Protein
Protein identifiers
Trans-Golgi network integral membrane protein 2 — O43493 (reviewed: O43493)
Alternative names: Trans-Golgi network glycoprotein 46, Trans-Golgi network glycoprotein 48, Trans-Golgi network glycoprotein 51, Trans-Golgi network protein 2
All UniProt accessions (2): O43493, A0A5F9UY30
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in regulating membrane traffic to and from trans-Golgi network.
Subcellular location. Cell membrane. Golgi apparatus. trans-Golgi network membrane.
Tissue specificity. Isoform TGN46 is widely expressed. Isoform TGN51 is more abundant in fetal lung and kidney. Isoform TGN48 is barely expressed in embryonic kidney and promyelocytic cells.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O43493-2 | TGN46 | yes |
| O43493-3 | TGN48 | |
| O43493-4 | 4 | |
| O43493-5 | 5 | |
| O43493-6 | 6 | |
| O43493-7 | 7 |
RefSeq proteins (4): NP_001193773, NP_001355024, NP_001355025, NP_006455* (*=MANE)
Domains & families (InterPro)
Pfam: PF17818
UniProt features (69 total): repeat 14, compositionally biased region 9, glycosylation site 9, sequence variant 8, sequence conflict 7, splice variant 6, modified residue 5, short sequence motif 3, region of interest 2, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, mutagenesis site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6YAF | ELECTRON MICROSCOPY | 9.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O43493-F1 | 49.67 | 0.02 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (5): 71, 221, 298, 302, 351
Glycosylation sites (9): 39, 82, 96, 152, 180, 208, 222, 373, 377
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 430 | loss of relocalization to the trans-golgi. |
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| R-HSA-432722 | Golgi Associated Vesicle Biogenesis |
| R-HSA-6811440 | Retrograde transport at the Trans-Golgi-Network |
| R-HSA-8856825 | Cargo recognition for clathrin-mediated endocytosis |
| R-HSA-8856828 | Clathrin-mediated endocytosis |
| R-HSA-8957275 | Post-translational protein phosphorylation |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-199992 | trans-Golgi Network Vesicle Budding |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-597592 | Post-translational protein modification |
| R-HSA-6811442 | Intra-Golgi and retrograde Golgi-to-ER traffic |
MSigDB gene sets: 166 (showing top):
MORF_FLT1, FAELT_B_CLL_WITH_VH_REARRANGEMENTS_DN, SWEET_KRAS_ONCOGENIC_SIGNATURE, BASSO_B_LYMPHOCYTE_NETWORK, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_UP, REACTOME_MEMBRANE_TRAFFICKING, LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN, GERY_CEBP_TARGETS, GOCC_TRANS_GOLGI_NETWORK, LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_UP, GOCC_COATED_VESICLE, GOCC_GOLGI_ASSOCIATED_VESICLE, TIEN_INTESTINE_PROBIOTICS_24HR_UP, chr2p11
GO Biological Process (0):
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (10): nucleoplasm (GO:0005654), endosome (GO:0005768), endoplasmic reticulum lumen (GO:0005788), Golgi apparatus (GO:0005794), trans-Golgi network (GO:0005802), plasma membrane (GO:0005886), transport vesicle (GO:0030133), trans-Golgi network transport vesicle (GO:0030140), clathrin-coated endocytic vesicle membrane (GO:0030669), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-7 pathways:
| Category | Pathways |
|---|---|
| Membrane Trafficking | 3 |
| Metabolism of proteins | 2 |
| trans-Golgi Network Vesicle Budding | 1 |
| Intra-Golgi and retrograde Golgi-to-ER traffic | 1 |
| Clathrin-mediated endocytosis | 1 |
| Post-translational protein modification | 1 |
| Vesicle-mediated transport | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| endomembrane system | 3 |
| cellular anatomical structure | 2 |
| cytoplasmic vesicle | 2 |
| binding | 1 |
| nuclear lumen | 1 |
| endoplasmic reticulum | 1 |
| intracellular organelle lumen | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| Golgi apparatus subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| Golgi-associated vesicle | 1 |
| transport vesicle | 1 |
| clathrin-coated vesicle | 1 |
| clathrin-coated vesicle membrane | 1 |
| endocytic vesicle membrane | 1 |
| clathrin-coated endocytic vesicle | 1 |
Protein interactions and networks
STRING
2580 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TGOLN2 | GCC1 | Q96CN9 | 862 |
| TGOLN2 | STX6 | O43752 | 835 |
| TGOLN2 | MARCHF2 | Q9P0N8 | 815 |
| TGOLN2 | GOLGA2 | Q08379 | 798 |
| TGOLN2 | EEA1 | Q15075 | 785 |
| TGOLN2 | MARCHF3 | Q86UD3 | 777 |
| TGOLN2 | GOLGB1 | Q14789 | 772 |
| TGOLN2 | COPB1 | P53618 | 764 |
| TGOLN2 | PACS1 | Q6VY07 | 760 |
| TGOLN2 | IGF2R | P11717 | 756 |
| TGOLN2 | FURIN | P09958 | 755 |
| TGOLN2 | TFRC | P02786 | 732 |
| TGOLN2 | GOLPH3 | Q9H4A6 | 731 |
| TGOLN2 | GOLGA1 | Q92805 | 721 |
| TGOLN2 | LAMP1 | P11279 | 705 |
IntAct
44 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TGOLN2 | KRTAP10-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TGOLN2 | ACBD3 | psi-mi:“MI:0403”(colocalization) | 0.550 |
| PIK3R1 | TGOLN2 | psi-mi:“MI:0915”(physical association) | 0.540 |
| AP2B1 | TGOLN2 | psi-mi:“MI:0915”(physical association) | 0.540 |
| TGOLN2 | DENND11 | psi-mi:“MI:0914”(association) | 0.530 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| TGOLN2 | IGF2R | psi-mi:“MI:0403”(colocalization) | 0.450 |
| TGOLN2 | GGA3 | psi-mi:“MI:0403”(colocalization) | 0.450 |
| TGOLN2 | PGRMC1 | psi-mi:“MI:0914”(association) | 0.420 |
| TGOLN2 | ABL1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TGOLN2 | CRK | psi-mi:“MI:0915”(physical association) | 0.400 |
| TGOLN2 | FYN | psi-mi:“MI:0915”(physical association) | 0.400 |
| TGOLN2 | GRB2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TGOLN2 | NCK1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLCG1 | TGOLN2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NS3 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
| SHTN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| TNFRSF10A | psi-mi:“MI:0914”(association) | 0.350 | |
| CD53 | RAP1BL | psi-mi:“MI:0914”(association) | 0.350 |
| MAGEA8 | METTL15 | psi-mi:“MI:0914”(association) | 0.350 |
| DOCK5 | DPYSL4 | psi-mi:“MI:0914”(association) | 0.350 |
| TGOLN2 | VIM | psi-mi:“MI:0914”(association) | 0.350 |
| AFG2B | MMP24OS | psi-mi:“MI:0914”(association) | 0.350 |
| SLC30A10 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (1770): KRTAP10-9 (Two-hybrid), TGOLN2 (Affinity Capture-MS), MDN1 (Affinity Capture-MS), POLE (Affinity Capture-MS), ATP1A3 (Affinity Capture-MS), NUP188 (Affinity Capture-MS), HEATR1 (Affinity Capture-MS), GPD1L (Affinity Capture-MS), INTS12 (Affinity Capture-MS), LARS2 (Affinity Capture-MS), IPO13 (Affinity Capture-MS), INTS4 (Affinity Capture-MS), PI4KA (Affinity Capture-MS), C16orf58 (Affinity Capture-MS), GOPC (Affinity Capture-MS)
ESM2 similar proteins: A0A060XQP6, A0A1S4FQ37, A2VD23, A3KQQ9, A7E371, B3A0Q3, B3EWZ0, B3EWZ1, B3EWZ4, B7W112, D1FQ14, E9Q9K5, G5EC21, O01949, O16883, O43493, O46203, O55188, O84462, P08721, P10451, P10923, P13665, P14287, P19814, P23498, P31096, P31097, P31098, P31936, P35662, P35663, P98193, Q13316, Q14093, Q28139, Q5MIT9, Q5SRN2, Q5UQ32, Q62313
Diamond homologs: O43493, P19814, Q5R5B8, Q62313, Q62314, Q8NC54, Q8K201
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 44 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Downstream signal transduction | 6 | 65.3× | 1e-07 |
| DAP12 signaling | 5 | 52.6× | 4e-06 |
| FCGR3A-mediated phagocytosis | 5 | 26.7× | 4e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
66 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 45 |
| Likely benign | 3 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
312 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:85324911:TTA:T | donor_loss | 1.0000 |
| 2:85324912:TACC:T | donor_loss | 1.0000 |
| 2:85324913:A:AC | donor_gain | 1.0000 |
| 2:85324913:AC:A | donor_gain | 1.0000 |
| 2:85324913:ACCT:A | donor_loss | 1.0000 |
| 2:85324914:C:CC | donor_gain | 1.0000 |
| 2:85324914:CC:C | donor_gain | 1.0000 |
| 2:85324914:CCTT:C | donor_gain | 1.0000 |
| 2:85324994:ATGAT:A | acceptor_gain | 1.0000 |
| 2:85324995:TGAT:T | acceptor_gain | 1.0000 |
| 2:85324996:GAT:G | acceptor_gain | 1.0000 |
| 2:85324997:AT:A | acceptor_gain | 1.0000 |
| 2:85324999:C:CC | acceptor_gain | 1.0000 |
| 2:85326503:CTTA:C | donor_loss | 1.0000 |
| 2:85326504:TTA:T | donor_loss | 1.0000 |
| 2:85326505:TA:T | donor_loss | 1.0000 |
| 2:85326506:A:AC | donor_gain | 1.0000 |
| 2:85326506:AC:A | donor_gain | 1.0000 |
| 2:85326506:ACCTT:A | donor_gain | 1.0000 |
| 2:85326507:C:CA | donor_gain | 1.0000 |
| 2:85326507:CC:C | donor_gain | 1.0000 |
| 2:85326507:CCT:C | donor_gain | 1.0000 |
| 2:85326507:CCTT:C | donor_gain | 1.0000 |
| 2:85326507:CCTTC:C | donor_gain | 1.0000 |
| 2:85327912:CTTAC:C | donor_loss | 1.0000 |
| 2:85327913:TTA:T | donor_loss | 1.0000 |
| 2:85327914:TACCC:T | donor_loss | 1.0000 |
| 2:85327916:CCCG:C | donor_gain | 1.0000 |
| 2:85324913:ACCTT:A | donor_gain | 0.9900 |
| 2:85324914:CCTTC:C | donor_gain | 0.9900 |
AlphaMissense
2862 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:85326514:C:A | K406N | 0.998 |
| 2:85326514:C:G | K406N | 0.998 |
| 2:85326527:G:T | A402D | 0.998 |
| 2:85326542:G:T | A397D | 0.998 |
| 2:85326566:A:G | L389P | 0.998 |
| 2:85326518:T:A | N405I | 0.997 |
| 2:85326554:G:T | A393D | 0.997 |
| 2:85324985:A:T | V413D | 0.996 |
| 2:85324991:G:T | A411D | 0.996 |
| 2:85324925:A:G | L433S | 0.995 |
| 2:85324935:A:G | Y430H | 0.995 |
| 2:85324994:A:T | I410N | 0.995 |
| 2:85324997:A:C | I409S | 0.995 |
| 2:85324997:A:G | I409T | 0.995 |
| 2:85326508:C:A | K408N | 0.995 |
| 2:85326508:C:G | K408N | 0.995 |
| 2:85324934:T:C | Y430C | 0.994 |
| 2:85324982:A:G | L414P | 0.994 |
| 2:85326515:T:A | K406M | 0.994 |
| 2:85326517:G:C | N405K | 0.994 |
| 2:85326517:G:T | N405K | 0.994 |
| 2:85326522:G:C | H404D | 0.994 |
| 2:85326528:C:G | A402P | 0.994 |
| 2:85326530:A:T | I401N | 0.994 |
| 2:85326534:A:C | Y400D | 0.994 |
| 2:85326539:A:T | V398D | 0.994 |
| 2:85326545:A:T | V396E | 0.994 |
| 2:85326558:C:G | A392P | 0.994 |
| 2:85324977:C:G | G416R | 0.993 |
| 2:85324977:C:T | G416R | 0.993 |
dbSNP variants (sampled 300 via entrez): RS1000521781 (2:85323603 C>A,T), RS1000611066 (2:85328306 A>C), RS1000738356 (2:85323874 G>A), RS1001134820 (2:85322221 C>A,G,T), RS1001268977 (2:85322994 T>C), RS1001414718 (2:85329124 T>C), RS1001440310 (2:85322495 G>A), RS1001486369 (2:85329425 C>T), RS1001651469 (2:85319881 A>G,T), RS1001700301 (2:85323266 A>T), RS1002202607 (2:85325123 C>A,T), RS1002420612 (2:85327983 G>A), RS1002675389 (2:85321317 T>C), RS1002799287 (2:85326619 A>G), RS1003402124 (2:85319771 G>A)
Disease associations
OMIM: gene MIM:603062 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010241_421 | Apolipoprotein A1 levels | 1.000000e-12 |
| GCST010242_351 | HDL cholesterol levels | 1.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004614 | apolipoprotein A 1 measurement |
| EFO:0004612 | high density lipoprotein cholesterol measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067035 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
59 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression | 3 |
| Cadmium Chloride | decreases expression, increases expression | 3 |
| methacrylaldehyde | increases abundance, affects cotreatment, affects expression, increases expression | 2 |
| Acrolein | increases expression, increases abundance, affects cotreatment, affects expression | 2 |
| Ozone | affects cotreatment, affects expression, increases expression, increases abundance | 2 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 2 |
| Tretinoin | affects expression, increases expression | 2 |
| FR900359 | increases phosphorylation | 1 |
| testosterone enanthate | affects expression | 1 |
| alpha-pinene | affects cotreatment, affects expression, increases abundance | 1 |
| uranyl acetate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| coumarin | decreases phosphorylation | 1 |
| enzacamene | increases expression | 1 |
| tamibarotene | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| octylmethoxycinnamate | decreases expression | 1 |
| torcetrapib | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| LM11 compound | affects localization | 1 |
| bisphenol AF | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Arsenic Trioxide | decreases expression | 1 |
| Air Pollutants | affects cotreatment, affects expression, increases abundance | 1 |
| Amiodarone | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652622 | Binding | Binding affinity to human TGOLN2 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1I1 | Abcam A-549 TGOLN2 KO | Cancer cell line | Male |
| CVCL_TS26 | HAP1 TGOLN2 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.