TIPRL
gene geneOn this page
Also known as MGC3794dJ69E11.3TIP41TIPRL1
Summary
TIPRL (TOR signaling pathway regulator, HGNC:30231) is a protein-coding gene on chromosome 1q24.2, encoding TIP41-like protein (O75663). May be a allosteric regulator of serine/threonine-protein phosphatase 2A (PP2A). It is a selective cancer dependency (DepMap: 40.6% of cell lines).
TIPRL is an inhibitory regulator of protein phosphatase-2A (PP2A) (see PPP2CA; MIM 176915), PP4 (see PPP4C; MIM 602035), and PP6 (see PPP6C; MIM 612725) (McConnell et al., 2007 [PubMed 17384681]).
Source: NCBI Gene 261726 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 35 total
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 40.6% of screened cell lines
- MANE Select transcript:
NM_152902
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30231 |
| Approved symbol | TIPRL |
| Name | TOR signaling pathway regulator |
| Location | 1q24.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC3794, dJ69E11.3, TIP41, TIPRL1 |
| Ensembl gene | ENSG00000143155 |
| Ensembl biotype | protein_coding |
| OMIM | 611807 |
| Entrez | 261726 |
Gene structure
Transcript identifiers
Ensembl transcripts: 5 — 5 protein_coding
ENST00000367830, ENST00000367833, ENST00000940324, ENST00000940325, ENST00000940326
RefSeq mRNA: 2 — MANE Select: NM_152902
NM_001031800, NM_152902
CCDS: CCDS1270, CCDS30935
Canonical transcript exons
ENST00000367833 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000958402 | 168183902 | 168184081 |
| ENSE00000958403 | 168184779 | 168184878 |
| ENSE00000958404 | 168191369 | 168191500 |
| ENSE00001193861 | 168198919 | 168198981 |
| ENSE00001193868 | 168196547 | 168196642 |
| ENSE00001445713 | 168199903 | 168202109 |
| ENSE00001445714 | 168178962 | 168179181 |
Expression profiles
Bgee: expression breadth ubiquitous, 289 present calls, max score 97.20.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 36.9554 / max 487.5155, expressed in 1822 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 6473 | 23.0984 | 1813 |
| 6474 | 10.2962 | 1774 |
| 6475 | 2.9543 | 1478 |
| 201805 | 0.6066 | 339 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cauda epididymis | UBERON:0004360 | 97.20 | gold quality |
| caput epididymis | UBERON:0004358 | 95.64 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 95.50 | gold quality |
| corpus epididymis | UBERON:0004359 | 95.31 | gold quality |
| cortical plate | UBERON:0005343 | 95.02 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 94.50 | gold quality |
| nipple | UBERON:0002030 | 94.43 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 94.25 | gold quality |
| saphenous vein | UBERON:0007318 | 93.90 | gold quality |
| mammary duct | UBERON:0001765 | 93.73 | gold quality |
| entorhinal cortex | UBERON:0002728 | 93.65 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 93.60 | gold quality |
| hair follicle | UBERON:0002073 | 93.39 | gold quality |
| colonic mucosa | UBERON:0000317 | 93.35 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 93.14 | gold quality |
| pylorus | UBERON:0001166 | 92.94 | gold quality |
| vena cava | UBERON:0004087 | 92.92 | gold quality |
| adrenal tissue | UBERON:0018303 | 92.87 | gold quality |
| ganglionic eminence | UBERON:0004023 | 92.83 | gold quality |
| pons | UBERON:0000988 | 92.19 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 92.17 | silver quality |
| parietal lobe | UBERON:0001872 | 92.16 | gold quality |
| gingiva | UBERON:0001828 | 92.15 | gold quality |
| gingival epithelium | UBERON:0001949 | 92.15 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 92.13 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.13 | gold quality |
| cardia of stomach | UBERON:0001162 | 92.12 | gold quality |
| seminal vesicle | UBERON:0000998 | 92.07 | gold quality |
| superior surface of tongue | UBERON:0007371 | 92.03 | gold quality |
| visceral pleura | UBERON:0002401 | 91.96 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 5.87 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
103 targeting TIPRL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3689D | 100.00 | 66.14 | 1181 |
| HSA-MIR-6851-5P | 100.00 | 65.63 | 1294 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-551B-5P | 99.96 | 71.28 | 3493 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-6835-3P | 99.93 | 70.49 | 2904 |
| HSA-MIR-515-5P | 99.92 | 69.82 | 2343 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-498-3P | 99.91 | 71.27 | 1114 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-576-5P | 99.84 | 70.46 | 2582 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 40.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 8)
- Data indicate that PP2A holoenzyme biogenesis and activity are controlled by five PP2A modulators, consisting of alpha4, PTPA, LCMT1, PME-1 and TIPRL1, which serve to prevent promiscuous phosphatase activity until the holoenzyme is completely assembled. (PMID:22443683)
- TIPRL is highly up-regulated in human HCC samples and cell lines, compared with noncancerous liver tissues. (PMID:22841785)
- Unlike yeast TIP41, TIPRL has a positive effect on mTORC1 signaling through the association with PP2Ac. (PMID:23892082)
- overexpression of TIPRL promotes phosphorylation of H2AX, and increases gamma-H2AX positive foci in response to DNA damage, whereas knockdown of TIPRL inhibits gamma-H2AX phosphorylation (PMID:26717153)
- MPC2 rs10489202 was genome-wide significantly associated with schizophrenia. The expression quantitative trait loci analysis in lymphoblastoid cell lines from East Asian donors revealed that MPC2 rs10489202 was specifically and significantly associated with the expression of TIPRL gene. (PMID:30087317)
- The positive correlation of TIPRL with LC3 and CD133 contributes to cancer aggressiveness: potential biomarkers for early liver cancer. (PMID:31727942)
- TIPRL potentiates survival of lung cancer by inducing autophagy through the eIF2alpha-ATF4 pathway. (PMID:31862913)
- TIPRL, a Potential Double-edge Molecule to be Targeted and Re-targeted Toward Cancer. (PMID:38888871)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tiprl | ENSDARG00000032353 |
| mus_musculus | Tiprl | ENSMUSG00000040843 |
| rattus_norvegicus | Tiprl | ENSRNOG00000003048 |
| drosophila_melanogaster | CG9578 | FBGN0031094 |
| caenorhabditis_elegans | WBGENE00022803 |
Protein
Protein identifiers
TIP41-like protein — O75663 (reviewed: O75663)
Alternative names: Putative MAPK-activating protein PM10, Type 2A-interacting protein
All UniProt accessions (1): O75663
UniProt curated annotations — full annotation on UniProt →
Function. May be a allosteric regulator of serine/threonine-protein phosphatase 2A (PP2A). Isoform 1 inhibits catalytic activity of the PP2A(D) core complex in vitro. The PP2A(C):TIPRL complex does not show phosphatase activity. Acts as a negative regulator of serine/threonine-protein phosphatase 4 probably by inhibiting the formation of the active PPP4C:PPP4R2 complex; the function is proposed to implicate it in DNA damage response by promoting H2AX phosphorylated on Ser-140 (gamma-H2AX). May play a role in the regulation of ATM/ATR signaling pathway controlling DNA replication and repair.
Subunit / interactions. Isoform 1 interacts with PPP2CA. Isoform 2 does not interact with PPP2CA. Interacts with PPP2CB, PPP4C and PPP6C. Interacts with IGBP1; the interaction is dependent on PPP2CA. Associates with a protein phosphatase 2A PP2A(C):IGBP1 complex. Interacts with PPP4C and PPP4R2.
Subcellular location. Cytoplasm.
Similarity. Belongs to the TIP41 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75663-1 | 1 | yes |
| O75663-2 | 2, TIP_i2 |
RefSeq proteins (2): NP_001026970, NP_690866* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007303 | TIP41-like | Family |
| IPR051330 | Phosphatase_reg/MetRdx | Family |
Pfam: PF04176
UniProt features (33 total): strand 12, helix 8, mutagenesis site 5, modified residue 2, turn 2, splice variant 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5D9G | X-RAY DIFFRACTION | 2.15 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75663-F1 | 85.04 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 106, 265
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 198 | abolishes interaction with ppp2ca, ppp2cb and ppp4c. |
| 71 | abolishes interaction with ppp2ca, ppp2cb and ppp4c. |
| 79 | diminishes interaction with ppp2ca. |
| 136 | abolishes interaction with ppp2ca, ppp2cb and ppp4c. |
| 196 | abolishes interaction with ppp2ca, ppp2cb and ppp4c. |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 151 (showing top):
ATF_B, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, GOBP_CELL_CYCLE_PHASE_TRANSITION, CREBP1_Q2, SP1_Q2_01, CREB_Q4, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE, GOBP_REGULATION_OF_CELL_CYCLE, GOBP_DNA_DAMAGE_RESPONSE, ATF3_Q6, CREB_Q2_01, ATF4_Q2, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_TOR_SIGNALING
GO Biological Process (2): DNA damage checkpoint signaling (GO:0000077), TOR signaling (GO:0031929)
GO Molecular Function (3): protein phosphatase inhibitor activity (GO:0004864), protein phosphatase activator activity (GO:0072542), protein binding (GO:0005515)
GO Cellular Component (2): cytosol (GO:0005829), cytoplasm (GO:0005737)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| phosphoprotein phosphatase activity | 2 |
| protein phosphatase regulator activity | 2 |
| cellular anatomical structure | 2 |
| DNA integrity checkpoint signaling | 1 |
| signal transduction in response to DNA damage | 1 |
| intracellular signal transduction | 1 |
| phosphatase inhibitor activity | 1 |
| phosphatase activator activity | 1 |
| binding | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
2216 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TIPRL | PPP4C | P33172 | 957 |
| TIPRL | PPP2CA | P05323 | 952 |
| TIPRL | PPP6C | O00743 | 879 |
| TIPRL | MAP2K7 | O14733 | 821 |
| TIPRL | LCMT1 | Q9UIC8 | 710 |
| TIPRL | IGBP1 | P78318 | 670 |
| TIPRL | PPP2R1A | P30153 | 595 |
| TIPRL | TBCEL | Q5QJ74 | 570 |
| TIPRL | TUB | P50607 | 547 |
| TIPRL | PLCH1 | Q4KWH8 | 517 |
| TIPRL | PTPA | Q15257 | 516 |
| TIPRL | ATM | Q13315 | 495 |
| TIPRL | PPME1 | Q9Y570 | 470 |
| TIPRL | EEF1A2 | P54266 | 467 |
| TIPRL | EEF1A1 | P04719 | 434 |
IntAct
70 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PPP2R1A | STRN | psi-mi:“MI:0914”(association) | 0.880 |
| PPP2R1A | STRN | psi-mi:“MI:2364”(proximity) | 0.880 |
| PPP6C | ANKRD28 | psi-mi:“MI:0914”(association) | 0.870 |
| TIPRL | PPP4C | psi-mi:“MI:0914”(association) | 0.850 |
| PPP4C | TIPRL | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| PPP4C | TIPRL | psi-mi:“MI:0915”(physical association) | 0.850 |
| PPP4R2 | TIPRL | psi-mi:“MI:0914”(association) | 0.800 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| PPP6C | TIPRL | psi-mi:“MI:0407”(direct interaction) | 0.700 |
| TIPRL | PPP6C | psi-mi:“MI:0915”(physical association) | 0.700 |
| DYNLT1 | DYNC1LI2 | psi-mi:“MI:0914”(association) | 0.640 |
| PPP4C | SUPT5H | psi-mi:“MI:0914”(association) | 0.640 |
| PPP2CB | TIPRL | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| TIPRL | PPP2CA | psi-mi:“MI:0915”(physical association) | 0.590 |
| PPP4R2 | SF3B1 | psi-mi:“MI:0914”(association) | 0.570 |
| PPP4R2 | SF3B1 | psi-mi:“MI:2364”(proximity) | 0.570 |
| L3MBTL1 | DNAJB6 | psi-mi:“MI:0914”(association) | 0.530 |
| PPP2R1A | ENSA | psi-mi:“MI:0914”(association) | 0.530 |
| DYNLT2B | TIPRL | psi-mi:“MI:0914”(association) | 0.510 |
| PPP2CA | TIPRL | psi-mi:“MI:0914”(association) | 0.500 |
| PPP2CA | TIPRL | psi-mi:“MI:0915”(physical association) | 0.500 |
BioGRID (157): TIPRL (Affinity Capture-MS), TIPRL (Affinity Capture-Western), TIPRL (Affinity Capture-Western), IGBP1 (Affinity Capture-Western), Ppp2ca (Affinity Capture-Western), ARHGAP44 (Co-fractionation), MCMBP (Co-fractionation), NPEPL1 (Co-fractionation), SH3BP1 (Co-fractionation), TIPRL (Co-fractionation), TIPRL (Co-fractionation), TIPRL (Co-fractionation), TIPRL (Co-fractionation), TIPRL (Co-fractionation), TIPRL (Co-fractionation)
ESM2 similar proteins: A1BDQ9, A1DPK7, A8G2V3, B3EFT2, B3EM52, B4S4Y9, B4SCX8, B6YS15, C0SPB1, C4QGM3, C7ZPG2, O15145, O32042, O41126, O48397, O75663, O92551, P04028, P05673, P06942, P06944, P09877, P0C141, P0C571, P0CA30, P0CA85, P0CA86, P13137, P13844, P18611, P20402, P24730, P35976, P41358, Q01639, Q1ECJ7, Q1WTX9, Q32RZ2, Q3T035, Q54EY1
Diamond homologs: A2VCX1, O75663, P34274, Q12199, Q54MI6, Q5FW12, Q6IRA8, Q8BH58, Q8VXY4, Q9USK5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
35 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 20 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1208 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:168179161:G:GT | donor_gain | 1.0000 |
| 1:168179171:G:GT | donor_gain | 1.0000 |
| 1:168179175:TGGAG:T | donor_gain | 1.0000 |
| 1:168179179:G:GT | donor_gain | 1.0000 |
| 1:168179179:GAA:G | donor_gain | 1.0000 |
| 1:168179182:G:GG | donor_gain | 1.0000 |
| 1:168183935:T:TA | acceptor_gain | 1.0000 |
| 1:168183940:T:TA | acceptor_gain | 1.0000 |
| 1:168184768:T:TA | acceptor_gain | 1.0000 |
| 1:168191367:A:AG | acceptor_gain | 1.0000 |
| 1:168191367:AG:A | acceptor_gain | 1.0000 |
| 1:168191367:AGGTT:A | acceptor_gain | 1.0000 |
| 1:168191368:G:GT | acceptor_gain | 1.0000 |
| 1:168191368:GG:G | acceptor_gain | 1.0000 |
| 1:168191368:GGT:G | acceptor_gain | 1.0000 |
| 1:168191368:GGTT:G | acceptor_gain | 1.0000 |
| 1:168191368:GGTTG:G | acceptor_gain | 1.0000 |
| 1:168191496:AGATT:A | donor_gain | 1.0000 |
| 1:168191497:GATT:G | donor_gain | 1.0000 |
| 1:168191497:GATTG:G | donor_gain | 1.0000 |
| 1:168191498:ATTG:A | donor_loss | 1.0000 |
| 1:168191499:TT:T | donor_gain | 1.0000 |
| 1:168191500:TGTG:T | donor_loss | 1.0000 |
| 1:168191501:G:GG | donor_gain | 1.0000 |
| 1:168191501:G:T | donor_loss | 1.0000 |
| 1:168191504:A:AG | donor_gain | 1.0000 |
| 1:168191505:G:GG | donor_gain | 1.0000 |
| 1:168196542:TCCA:T | acceptor_loss | 1.0000 |
| 1:168196544:CAGAG:C | acceptor_gain | 1.0000 |
| 1:168196545:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
1816 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:168183945:T:C | F50L | 1.000 |
| 1:168183947:T:A | F50L | 1.000 |
| 1:168183947:T:G | F50L | 1.000 |
| 1:168184068:T:A | W91R | 1.000 |
| 1:168184068:T:C | W91R | 1.000 |
| 1:168184070:G:C | W91C | 1.000 |
| 1:168184070:G:T | W91C | 1.000 |
| 1:168184822:T:A | W110R | 1.000 |
| 1:168184822:T:C | W110R | 1.000 |
| 1:168184824:G:C | W110C | 1.000 |
| 1:168184824:G:T | W110C | 1.000 |
| 1:168184846:G:A | G118R | 1.000 |
| 1:168184846:G:C | G118R | 1.000 |
| 1:168191463:T:C | L160P | 1.000 |
| 1:168191469:A:C | D162A | 1.000 |
| 1:168191469:A:T | D162V | 1.000 |
| 1:168191475:G:A | G164E | 1.000 |
| 1:168179129:T:A | W18R | 0.999 |
| 1:168179129:T:C | W18R | 0.999 |
| 1:168183934:C:A | P46H | 0.999 |
| 1:168183940:T:C | M48T | 0.999 |
| 1:168183940:T:G | M48R | 0.999 |
| 1:168183945:T:A | F50I | 0.999 |
| 1:168183956:C:A | N53K | 0.999 |
| 1:168183956:C:G | N53K | 0.999 |
| 1:168183997:T:C | F67S | 0.999 |
| 1:168184012:C:A | A72E | 0.999 |
| 1:168184847:G:A | G118E | 0.999 |
| 1:168191406:T:C | L141S | 0.999 |
| 1:168191456:G:C | D158H | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000113715 (1:168182243 G>A,C), RS1000187322 (1:168194958 A>G), RS1000301209 (1:168189102 C>G), RS1000306552 (1:168178292 ATT>A,AT,ATTT), RS1000467935 (1:168182010 G>A,T), RS1000635112 (1:168187829 G>A), RS1000831370 (1:168194599 A>G), RS1000924313 (1:168193445 T>C), RS1000963310 (1:168182884 C>A,T), RS1001075815 (1:168196442 T>C), RS1001269762 (1:168182601 G>A), RS1001431072 (1:168196348 T>A,C), RS1001442334 (1:168197108 G>A), RS1001524197 (1:168177901 A>T), RS1001661404 (1:168178194 C>A,T)
Disease associations
OMIM: gene MIM:611807 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST011741_65 | LDL cholesterol levels in HIV infection | 8.000000e-06 |
| GCST90002404_436 | Red cell distribution width | 6.000000e-21 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0009188 | Red cell distribution width |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067004 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
1 potent at pChembl≥5 of 2 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.16 | Kd | 7005 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149592: Binding affinity to human TIPRL incubated for 45 mins by Kinobead based pull down assay | kd | 7.0055 | uM |
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, increases expression | 5 |
| sodium arsenite | affects binding, increases reaction, affects cotreatment, increases abundance, increases expression | 2 |
| dicrotophos | decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| sodium arsenate | increases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, increases reaction | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | increases abundance, increases expression, affects cotreatment | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| K 7174 | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | increases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| LDN 193189 | increases expression, affects cotreatment | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| MT19c compound | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Air Pollutants, Occupational | affects expression | 1 |
| Arsenic | affects cotreatment, increases abundance, increases expression | 1 |
| Cisplatin | decreases response to substance, increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652634 | Binding | Binding affinity to human TIPRL incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
2 cell lines: 1 transformed cell line, 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B3JA | Abcam HEK293T TIPRL KO | Transformed cell line | Female |
| CVCL_TS42 | HAP1 TIPRL (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.