TLN1
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Also known as ILWEQ
Summary
TLN1 (talin 1, HGNC:11845) is a protein-coding gene on chromosome 9p13.3, encoding Talin-1 (Q9Y490). High molecular weight cytoskeletal protein concentrated at regions of cell-matrix and cell-cell contacts. It is a selective cancer dependency (DepMap: 56.1% of cell lines).
This gene encodes a cytoskeletal protein that is concentrated in areas of cell-substratum and cell-cell contacts. The encoded protein plays a significant role in the assembly of actin filaments and in spreading and migration of various cell types, including fibroblasts and osteoclasts. It codistributes with integrins in the cell surface membrane in order to assist in the attachment of adherent cells to extracellular matrices and of lymphocytes to other cells. The N-terminus of this protein contains elements for localization to cell-extracellular matrix junctions. The C-terminus contains binding sites for proteins such as beta-1-integrin, actin, and vinculin.
Source: NCBI Gene 7094 — RefSeq curated summary.
At a glance
- Gene–disease (curated): idiopathic spontaneous coronary artery dissection (Moderate, GenCC) — +1 more curated relationship
- GWAS associations: 7
- Clinical variants (ClinVar): 321 total — 1 likely-pathogenic
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 56.1% of screened cell lines
- MANE Select transcript:
NM_006289
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11845 |
| Approved symbol | TLN1 |
| Name | talin 1 |
| Location | 9p13.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | ILWEQ |
| Ensembl gene | ENSG00000137076 |
| Ensembl biotype | protein_coding |
| OMIM | 186745 |
| Entrez | 7094 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 4 retained_intron, 3 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000314888, ENST00000378192, ENST00000464379, ENST00000465002, ENST00000466916, ENST00000486788, ENST00000489255, ENST00000495712, ENST00000706939, ENST00000912154
RefSeq mRNA: 1 — MANE Select: NM_006289
NM_006289
CCDS: CCDS35009
Canonical transcript exons
ENST00000314888 — 57 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000928241 | 35699032 | 35699156 |
| ENSE00000928242 | 35699356 | 35699461 |
| ENSE00000928243 | 35699974 | 35700081 |
| ENSE00000928244 | 35700191 | 35700376 |
| ENSE00000928249 | 35704669 | 35704815 |
| ENSE00000928253 | 35706196 | 35706366 |
| ENSE00000928254 | 35706450 | 35706551 |
| ENSE00000928255 | 35706768 | 35706900 |
| ENSE00000928256 | 35707072 | 35707253 |
| ENSE00000928257 | 35707348 | 35707488 |
| ENSE00000928258 | 35707731 | 35707892 |
| ENSE00000928259 | 35708341 | 35708484 |
| ENSE00000928260 | 35710561 | 35710683 |
| ENSE00000928261 | 35710797 | 35710886 |
| ENSE00000928262 | 35710989 | 35711082 |
| ENSE00000928263 | 35711255 | 35711394 |
| ENSE00000928264 | 35711595 | 35711792 |
| ENSE00000928265 | 35712005 | 35712124 |
| ENSE00000928266 | 35712835 | 35713043 |
| ENSE00000928267 | 35713196 | 35713298 |
| ENSE00000928268 | 35713953 | 35714081 |
| ENSE00000928270 | 35714574 | 35714687 |
| ENSE00000928271 | 35714760 | 35714876 |
| ENSE00000928272 | 35715059 | 35715187 |
| ENSE00000928273 | 35716390 | 35716556 |
| ENSE00000928274 | 35717146 | 35717440 |
| ENSE00000928275 | 35717619 | 35717786 |
| ENSE00000928277 | 35719074 | 35719282 |
| ENSE00000928278 | 35719519 | 35719627 |
| ENSE00000928279 | 35719740 | 35719853 |
| ENSE00000928280 | 35720039 | 35720219 |
| ENSE00000928281 | 35720433 | 35720509 |
| ENSE00000928282 | 35720812 | 35720913 |
| ENSE00000928284 | 35722119 | 35722223 |
| ENSE00000928285 | 35722861 | 35722921 |
| ENSE00000928286 | 35723952 | 35724079 |
| ENSE00001429527 | 35714239 | 35714373 |
| ENSE00001476780 | 35732075 | 35732195 |
| ENSE00001688684 | 35721648 | 35721803 |
| ENSE00001900879 | 35696948 | 35697916 |
| ENSE00003484692 | 35724830 | 35724959 |
| ENSE00003493835 | 35698808 | 35698933 |
| ENSE00003495883 | 35703560 | 35703676 |
| ENSE00003498304 | 35703991 | 35704174 |
| ENSE00003502206 | 35705551 | 35705670 |
| ENSE00003536036 | 35698617 | 35698679 |
| ENSE00003550241 | 35725565 | 35725727 |
| ENSE00003556858 | 35724192 | 35724334 |
| ENSE00003571836 | 35704332 | 35704498 |
| ENSE00003576729 | 35705750 | 35705851 |
| ENSE00003581464 | 35725224 | 35725321 |
| ENSE00003583717 | 35724572 | 35724724 |
| ENSE00003602577 | 35705962 | 35706111 |
| ENSE00003619543 | 35698044 | 35698172 |
| ENSE00003674170 | 35698323 | 35698505 |
| ENSE00003694240 | 35703775 | 35703900 |
| ENSE00003997544 | 35718812 | 35718910 |
Expression profiles
Bgee: expression breadth ubiquitous, 269 present calls, max score 99.57.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 89.1485 / max 825.2482, expressed in 1828 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 100642 | 56.4481 | 1821 |
| 100646 | 31.3431 | 1803 |
| 100640 | 0.8488 | 503 |
| 100641 | 0.5085 | 272 |
Top tissues by expression
299 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| popliteal artery | UBERON:0002250 | 99.57 | gold quality |
| tibial artery | UBERON:0007610 | 99.57 | gold quality |
| ascending aorta | UBERON:0001496 | 99.53 | gold quality |
| aorta | UBERON:0000947 | 99.52 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.52 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.50 | gold quality |
| lower esophagus | UBERON:0013473 | 99.49 | gold quality |
| right coronary artery | UBERON:0001625 | 99.47 | gold quality |
| artery | UBERON:0001637 | 99.46 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.46 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.46 | gold quality |
| left coronary artery | UBERON:0001626 | 99.41 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.39 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.33 | gold quality |
| body of uterus | UBERON:0009853 | 99.30 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.25 | gold quality |
| left uterine tube | UBERON:0001303 | 99.22 | gold quality |
| coronary artery | UBERON:0001621 | 99.20 | gold quality |
| right lung | UBERON:0002167 | 99.07 | gold quality |
| apex of heart | UBERON:0002098 | 99.06 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 99.03 | gold quality |
| peripheral nervous system | UBERON:0000010 | 99.01 | gold quality |
| nerve | UBERON:0001021 | 99.01 | gold quality |
| tibial nerve | UBERON:0001323 | 99.01 | gold quality |
| granulocyte | CL:0000094 | 98.99 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.96 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 98.96 | gold quality |
| monocyte | CL:0000576 | 98.90 | gold quality |
| endocervix | UBERON:0000458 | 98.85 | gold quality |
| omental fat pad | UBERON:0010414 | 98.83 | gold quality |
Single-cell (SCXA)
Detected in 11 experiment(s), a significant marker in 10.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-4 | yes | 37.71 |
| E-CURD-112 | yes | 36.49 |
| E-MTAB-9221 | yes | 24.99 |
| E-CURD-122 | yes | 24.19 |
| E-HCAD-6 | yes | 19.91 |
| E-HCAD-10 | yes | 17.23 |
| E-MTAB-9067 | yes | 13.13 |
| E-MTAB-9388 | yes | 10.62 |
| E-HCAD-1 | yes | 6.25 |
| E-GEOD-124858 | no | 378.87 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): FOXF2
miRNA regulators (miRDB)
69 targeting TLN1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-374C-5P | 99.80 | 72.06 | 2910 |
| HSA-MIR-655-3P | 99.80 | 72.19 | 2909 |
| HSA-MIR-6763-5P | 99.76 | 64.68 | 1767 |
| HSA-MIR-3150A-3P | 99.76 | 64.44 | 1640 |
| HSA-MIR-8084 | 99.73 | 69.57 | 1760 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6715B-5P | 99.64 | 69.63 | 1420 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-7150 | 99.62 | 66.80 | 1322 |
| HSA-MIR-4269 | 99.55 | 69.89 | 1373 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 56.1% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- we show that the type I phosphatidylinositol phosphate kinase isoform-gamma 661 (PIPKI gamma 661), an enzyme that makes PtdIns(4,5)P(2), is targeted to focal adhesions by an association with talin (PMID:12422220)
- TLN1 is critical for force-dependent reinforcement of initial integrin-cytoskeleton bonds. (PMID:14581461)
- the integrin-binding site within the talin rod domain is important for beta(3)-cytoskeletal interactions but does not participate in alpha(IIb)beta(3) activation (PMID:15031296)
- The F-actin binding capacity of Talin 1 is regulated by intrasteric occlusion of primary actin-binding determinants within the talin I/LWEQ module. (PMID:15581353)
- two head-tail interfaces cooperate to suppress activation of vinculin by talin (PMID:15728584)
- Talin is essential for the stability and formation of the LFA-1 zone. Disruption of the talin-integrin link leads to loss of zone integrity and a substantial decrease in speed of migration on ICAM-1. (PMID:15983060)
- vinculin binding to talin depends on stability of the helical bundles that make up the talin rod (PMID:16407302)
- These findings suggest that talin F1 may be important in regulation of integrin binding and talin head-rod interaction. (PMID:16546176)
- data provide the first direct evidence that integrin binding site 2 in the talin rod is essential to link integrins to the cytoskeleton (PMID:17430904)
- Results decribe a mechanism in which signals from the T cell receptor produce WAVE2-ARP2/3-mediated de novo actin polymerization, leading to integrin clustering and high-affinity binding through the recruitment of vinculin and talin. (PMID:17591693)
- talin induced an intermediate affinity alphaLbeta2 that adhered constitutively to its ligand intercellular adhesion molecule ICAM-1 but not ICAM-3. (PMID:17591777)
- talin 1 is a versatile VLA-4 affinity regulator implicated in both spontaneous and chemokine-triggered rapid adhesions to VCAM-1. (PMID:17597073)
- Our results suggest that this conserved dimerization motif in the I/LWEQ module plays an essential role in the function of Talin1 as a component of focal adhesions and the other I/LWEQ module proteins in other multicomponent assemblies involved. (PMID:17722883)
- The expression of vinculin constructs with unmasked binding sites in the head and tail regions induces dramatic focal adhesion growth, which is mediated by their direct interaction with talin. (PMID:18056416)
- Upon phosphorylation of Tyr 747 in the beta3 integrin tail, however, Dok1 then binds much more strongly than talin. (PMID:18156175)
- the vinculin-talin-integrin system have a role in the transduction of mechanical force to the extracellular matrix (PMID:19148538)
- GATA-1, G208S MTC are deficient in talin, and what little is present relocates to the undersurface of the plasma membrane following activations where it associates with adhesion plaques. (PMID:19437340)
- F0F1 domain is essential for talin-induced activation of integrin alphaLbeta2 (LFA-1). (PMID:19903453)
- This review discusses the general function of talin 1 and talin 2, as well as vinculin/metavinulin, with emphasis on what is understood about their role in the cardiac myocyte and in whole heart. (PMID:19952892)
- Talin1 profiling in human prostate specimens revealed a significantly higher expression of cytoplasmic talin1 in metastatic tissue compared with primary prostate tumors. (PMID:20160039)
- Zap70 modulates integrin activation by interacting with talin, which contributes to directionality of T-cell migration, severing as a potential target for anti-inflammation therapy. (PMID:20488542)
- Rap1-mediated activation of alpha(M)beta(2) in macrophages shares both common and distinct features from Rap1 activation of alpha(IIb)beta(3) expressed in CHO cells. (PMID:20665668)
- Studies suggest that the perturbed orientation of talin relative to the membrane in the F2 mutant would be expected to in turn perturb talin/integrin interactions. (PMID:20947017)
- Data from talin crystal structure reveal a novel FERM domain with a linear domain arrangement, plus an additional domain F0 packed against F1. (PMID:20947018)
- p130Cas, Src and talin function in both oral carcinoma invasion and resistance to cisplatin. (PMID:21291860)
- We show that sequential cleavage of C-terminal amino acids from the beta(2) cytoplasmic tail of LFA-1, by CatX, enhances binding of the adaptor protein talin to LFA-1 and triggers formation of the latter’s high-affinity form (PMID:21454358)
- Adhesions within the carcinoma matrix create a matrix environment in which exposure to cisplatin induces proliferation through the function of integrin beta, talin and FAK pathways that regulate NF-kB nuclear activity. (PMID:21720550)
- Talin-1 and vinculin negatively affect tyrosine phosphorylation of paxillin, a novel positive regulator of HIV-1 infection, and impose an early block to infection by distinct retroviruses. (PMID:21763488)
- Talin-1 upregulation is associated with disease progression in hepatocellular carcinoma. Thus, it may serve as a prognostic marker. (PMID:21846996)
- We investigated the role of talin-1, kindlin-3, and alpha-actinin-1 in the upregulation of alpha(4)beta(1) integrin affinity and consequent inflammatory leukocyte adhesive events (PMID:21911599)
- Talin1 is required for inside-out activation of integrin beta1 during Bartonella henselae infection. (PMID:22045736)
- Talin1 is required for contact-dependent CD4-positive T cell proliferation in talin1 transgenic mice. Talin1 is not required for contact-independent CD4+ T cell proliferation. (PMID:22075696)
- FAK promotes talin recruitment to nascent adhesions occurring independently of talin binding to beta1 integrins. (PMID:22270917)
- Low Talin1 is associated with hepatocelluar carcinoma. (PMID:22471464)
- Kindlin-2 and talin head do not interact with one another but can bind simultaneously to the integrin beta(3) tail without enhancing or inhibiting the interaction of the other binding partner. (PMID:22648415)
- Data suggest that the signaling elements IL-6, IL-8, OPN, TLN1, and CTGF are involved with NF-kappaB p65 in random positioning machine (RPM)-dependent thyroid carcinoma cell spheroid formation. (PMID:22964303)
- Agonist stimulation, talin-1, and kindlin-3 are crucial for alpha(IIb)beta(3) activation in a human megakaryoblastic cell line, CMK. (PMID:23022222)
- Talin1 has unique expression versus talin 2 in the heart and modifies the hypertrophic response to pressure overload. (PMID:23266827)
- Data indicate that KIF14 and TLN1 loss-of-function significantly enhanced chemosensitivity in four triple-negative breast cancer (TNBC) cell lines. (PMID:23479679)
- miR-9 plays a role as a tumor suppressor in OSC by suppressing TLN1 expression. (PMID:23722670)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tln1 | ENSDARG00000100729 |
| mus_musculus | Tln1 | ENSMUSG00000028465 |
| rattus_norvegicus | Tln1 | ENSRNOG00000016630 |
| drosophila_melanogaster | rhea | FBGN0260442 |
| caenorhabditis_elegans | tln-1 | WBGENE00006771 |
Paralogs (2): TLNRD1 (ENSG00000140406), TLN2 (ENSG00000171914)
Protein
Protein identifiers
Talin-1 — Q9Y490 (reviewed: Q9Y490)
All UniProt accessions (1): Q9Y490
UniProt curated annotations — full annotation on UniProt →
Function. High molecular weight cytoskeletal protein concentrated at regions of cell-matrix and cell-cell contacts. Involved in connections of major cytoskeletal structures to the plasma membrane. With KANK1 co-organize the assembly of cortical microtubule stabilizing complexes (CMSCs) positioned to control microtubule-actin crosstalk at focal adhesions (FAs) rims.
Subunit / interactions. Part of a complex composed of THSD1, PTK2/FAK1, TLN1 and VCL. Interacts with THSD1; this promotes interaction with PTK2/FAK1 and VCL. Binds with high affinity to VCL and with low affinity to integrins. Interacts with APBB1IP; this inhibits VCL binding. Interacts with PTK2/FAK1. Interacts with PIP5K1C and NRAP. Interacts with LAYN. Interacts with SYNM. Interacts with ITGB1; the interaction is prevented by competitive binding of ITGB1BP1. Interacts with SVEP1. Interacts (via R7 domain) with KANK1 or KANK2 (via KN motif); this interaction likely initiates the assembly of cortical microtubule stabilization complexes (CMSCs) at the vicinity of focal adhesions. Interacts with VCL; shows reduced VCL binding compared to isoform 2. Interacts with APBB1IP; shows similar level of binding compared to isoform 2. Interacts with VCL; shows enhanced VCL binding compared to isoform 1. Interacts with APBB1IP; shows similar level of binding compared to isoform 1. (Microbial infection) Interacts with human cytomegalovirus protein UL135.
Subcellular location. Cell projection. Ruffle membrane. Cytoplasm. Cytoskeleton. Cell surface. Cell junction. Focal adhesion.
Tissue specificity. Expressed at low to non-detectable levels in many tissues but highly expressed in skin and pancreas with other tissues including kidney cortex, endocervix, testis, pituitary, liver, and spleen also showing robust expression.
Domain organisation. Consists of an N-terminal FERM domain linked via a short unstructured region to a large flexible C-terminal rod which contains 13 amphipathic helical bundles (R1-R13). The rod begins with a five-helix bundle (R1) followed by three four-helix bundles (R2-R4). These are followed by a series of eight five-helix bundles (R5-R7 and R9-R13) in which the N- and C-termini are positioned at opposite ends of the bundle, creating a linear chain. The four-helix bundle R8 does not disrupt the chain because it is inserted into a loop in the R7 five-helix bundle. The uneven distribution of four- and five-helix bundles creates two distinctly different zones: a compact N-terminal region sensitive to stretch and a linear C-terminal region that is optimal for force transmission.
Induction. By a combination of TGFB and EGF.
Miscellaneous. Shows reduced mechanical stability compared to isoform 1. Shows altered focal adhesion formation compared to isoform 1 with cells having a greater number of small adhesions compared to those expressing isoform 1. Expression in cancer cells is associated with altered drug responses. Cells show increased sensitivity to EGFR inhibitors but are resistant to drugs targeting PI3K signaling and cytoskeleton regulation.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y490-1 | 1 | yes |
| Q9Y490-2 | 2 |
RefSeq proteins (1): NP_006280* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000299 | FERM_domain | Domain |
| IPR002404 | IRS_PTB | Domain |
| IPR002558 | ILWEQ_dom | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR014352 | FERM/acyl-CoA-bd_prot_sf | Homologous_superfamily |
| IPR015009 | Vinculin-bd_dom | Domain |
| IPR015224 | Talin_cent | Domain |
| IPR019747 | FERM_CS | Conserved_site |
| IPR019748 | FERM_central | Domain |
| IPR019749 | Band_41_domain | Domain |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR032425 | FERM_f0 | Domain |
| IPR035963 | FERM_2 | Homologous_superfamily |
| IPR035964 | I/LWEQ_dom_sf | Homologous_superfamily |
| IPR036476 | Talin_cent_sf | Homologous_superfamily |
| IPR036723 | Alpha-catenin/vinculin-like_sf | Homologous_superfamily |
| IPR037438 | Talin1/2-RS | Domain |
| IPR049108 | Talin_R4 | Domain |
| IPR054060 | TLN1-like_RS | Domain |
| IPR054082 | Talin_IBS2B | Domain |
| IPR057346 | Talin1/2_VBS2 | Domain |
Pfam: PF01608, PF02174, PF08913, PF09141, PF16511, PF21692, PF21865, PF21896, PF25177
UniProt features (62 total): modified residue 20, region of interest 17, sequence conflict 7, strand 7, sequence variant 3, helix 3, domain 2, chain 1, splice variant 1, turn 1
Structure
Experimental structures (PDB)
4 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4DJ9 | X-RAY DIFFRACTION | 2.25 |
| 1SYQ | X-RAY DIFFRACTION | 2.42 |
| 6R9T | ELECTRON MICROSCOPY | 6.2 |
| 2MWN | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y490-F1 | 75.81 | 0.07 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (20): 167, 405, 425, 446, 620, 729, 1021, 1116, 1142, 1201, 1225, 1263, 1323, 1544, 1849, 1855, 1878, 2031, 2040, 2115
Function
Pathways and Gene Ontology
Reactome pathways
15 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-354192 | Integrin signaling |
| R-HSA-354194 | GRB2:SOS provides linkage to MAPK signaling for Integrins |
| R-HSA-372708 | p130Cas linkage to MAPK signaling for integrins |
| R-HSA-381038 | XBP1(S) activates chaperone genes |
| R-HSA-399955 | SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion |
| R-HSA-445355 | Smooth Muscle Contraction |
| R-HSA-5674135 | MAP2K and MAPK activation |
| R-HSA-6802946 | Signaling by moderate kinase activity BRAF mutants |
| R-HSA-6802948 | Signaling by high-kinase activity BRAF mutants |
| R-HSA-6802952 | Signaling by BRAF and RAF1 fusions |
| R-HSA-6802955 | Paradoxical activation of RAF signaling by kinase inactive BRAF |
| R-HSA-9649948 | Signaling downstream of RAS mutants |
| R-HSA-9656223 | Signaling by RAF1 mutants |
| R-HSA-9856530 | High laminar flow shear stress activates signaling by PIEZO1 and PECAM1:CDH5:KDR in endothelial cells |
MSigDB gene sets: 314 (showing top):
BIOCARTA_RHO_PATHWAY, REACTOME_UNFOLDED_PROTEIN_RESPONSE_UPR, GOBP_CYTOPLASMIC_MICROTUBULE_ORGANIZATION, MODULE_255, REACTOME_PLATELET_AGGREGATION_PLUG_FORMATION, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GOBP_PLATELET_ACTIVATION, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_FOCAL_ADHESION_ASSEMBLY, MODULE_317, GOCC_CELL_SURFACE, GOBP_REGULATION_OF_CELL_JUNCTION_ASSEMBLY, RACCACAR_AML_Q6, TGACCTY_ERR1_Q2, GOCC_RUFFLE
GO Biological Process (11): cell-cell junction assembly (GO:0007043), cell-substrate junction assembly (GO:0007044), integrin-mediated signaling pathway (GO:0007229), actin cytoskeleton organization (GO:0030036), cortical actin cytoskeleton organization (GO:0030866), integrin activation (GO:0033622), cortical microtubule organization (GO:0043622), regulation of focal adhesion assembly (GO:0051893), platelet aggregation (GO:0070527), cell-cell adhesion (GO:0098609), cell adhesion (GO:0007155)
GO Molecular Function (10): phosphatidylserine binding (GO:0001786), integrin binding (GO:0005178), structural constituent of cytoskeleton (GO:0005200), vinculin binding (GO:0017166), LIM domain binding (GO:0030274), phosphatidylinositol binding (GO:0035091), cadherin binding (GO:0045296), actin filament binding (GO:0051015), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (14): ruffle (GO:0001726), extracellular region (GO:0005576), cytoplasm (GO:0005737), cytosol (GO:0005829), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), adherens junction (GO:0005912), focal adhesion (GO:0005925), cell surface (GO:0009986), ruffle membrane (GO:0032587), extracellular exosome (GO:0070062), membrane (GO:0016020), cell projection (GO:0042995), anchoring junction (GO:0070161)
Reactome top-level categories
Rollup of top-11 pathways:
| Category | Pathways |
|---|---|
| Oncogenic MAPK signaling | 5 |
| Integrin signaling | 2 |
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Signal Transduction | 1 |
| Platelet Aggregation (Plug Formation) | 1 |
| IRE1alpha activates chaperones | 1 |
| Semaphorin interactions | 1 |
| Muscle contraction | 1 |
| RAF/MAP kinase cascade | 1 |
| Signaling by RAS mutants | 1 |
| Response of endothelial cells to shear stress | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| cell junction assembly | 2 |
| cytoskeleton organization | 2 |
| cortical cytoskeleton organization | 2 |
| anion binding | 2 |
| protein-containing complex binding | 2 |
| cell adhesion molecule binding | 2 |
| cytoskeletal protein binding | 2 |
| cell-cell junction organization | 1 |
| cell-substrate junction organization | 1 |
| cell surface receptor signaling pathway | 1 |
| actin filament-based process | 1 |
| actin cytoskeleton organization | 1 |
| protein-containing complex assembly | 1 |
| cytoplasmic microtubule organization | 1 |
| regulation of cell-matrix adhesion | 1 |
| focal adhesion assembly | 1 |
| regulation of cell-substrate junction assembly | 1 |
| platelet activation | 1 |
| homotypic cell-cell adhesion | 1 |
| cell adhesion | 1 |
| cellular process | 1 |
| phospholipid binding | 1 |
| modified amino acid binding | 1 |
| signaling receptor binding | 1 |
| structural molecule activity | 1 |
| cytoskeleton | 1 |
| protein domain specific binding | 1 |
| actin binding | 1 |
| binding | 1 |
| cell leading edge | 1 |
| plasma membrane bounded cell projection | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-cell junction | 1 |
| cell-substrate junction | 1 |
| ruffle | 1 |
Protein interactions and networks
STRING
2668 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TLN1 | VCL | P18206 | 999 |
| TLN1 | PXN | P49023 | 999 |
| TLN1 | ZYX | Q15942 | 999 |
| TLN1 | FLNA | P21333 | 997 |
| TLN1 | PTK2 | Q05397 | 997 |
| TLN1 | FLNB | O75369 | 996 |
| TLN1 | SRC | P12931 | 996 |
| TLN1 | BCAR1 | P56945 | 996 |
| TLN1 | ILK | P57043 | 996 |
| TLN1 | FLNC | Q14315 | 996 |
| TLN1 | APBB1IP | Q7Z5R6 | 995 |
| TLN1 | ITGB1 | P05556 | 994 |
| TLN1 | ITGB3 | P05106 | 991 |
| TLN1 | FN1 | P02751 | 988 |
| TLN1 | VASP | P50552 | 980 |
IntAct
175 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MED4 | MED19 | psi-mi:“MI:2364”(proximity) | 0.900 |
| TLN1 | ITGB3 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| ITGB3 | TLN1 | psi-mi:“MI:0407”(direct interaction) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| VCP | UBXN8 | psi-mi:“MI:0914”(association) | 0.690 |
| GTF2H4 | GTF2H1 | psi-mi:“MI:0914”(association) | 0.670 |
| VCAM1 | ITGB1 | psi-mi:“MI:0914”(association) | 0.660 |
| KANK4 | TRAPPC3 | psi-mi:“MI:0914”(association) | 0.640 |
| KANK4 | TRAPPC10 | psi-mi:“MI:0914”(association) | 0.640 |
| RET | TLN1 | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| TLN1 | RET | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| TLN1 | PIP5K1C | psi-mi:“MI:0407”(direct interaction) | 0.610 |
| PIP5K1C | TLN1 | psi-mi:“MI:0407”(direct interaction) | 0.610 |
| ARHGAP31 | TLN1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| TLN1 | psi-mi:“MI:0407”(direct interaction) | 0.590 | |
| TLN1 | ITGB1 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| ITGB1 | TLN1 | psi-mi:“MI:0915”(physical association) | 0.540 |
| SNRNP27 | UBA6 | psi-mi:“MI:0914”(association) | 0.530 |
| BLVRA | DDHD2 | psi-mi:“MI:0914”(association) | 0.530 |
| BAG2 | HGS | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (372): TLN1 (Affinity Capture-RNA), TLN1 (Affinity Capture-RNA), TLN1 (Affinity Capture-RNA), TLN1 (Affinity Capture-MS), TLN1 (Affinity Capture-MS), TLN1 (Affinity Capture-MS), TLN1 (Affinity Capture-MS), TLN1 (Affinity Capture-MS), NMD3 (Co-fractionation), RNASEH2C (Co-fractionation), TLN1 (Co-fractionation), TLN1 (Co-fractionation), TLN1 (Co-fractionation), TLN1 (Affinity Capture-MS), TLN1 (Proximity Label-MS)
ESM2 similar proteins: A0A3B6UES5, A0A3G2LGI8, D3ZHV2, G8JYB2, O46037, O60437, P0CE94, P0CE95, P11533, P12003, P18206, P19826, P26039, P26231, P26234, P30427, P33338, P35220, P35221, P54939, P85972, P90947, Q02328, Q03001, Q04615, Q15149, Q17162, Q3MHM6, Q54K81, Q54MH2, Q59I72, Q64727, Q6ZWR6, Q71LX4, Q8MSU4, Q91ZU6, Q95XZ0, Q9ERE8, Q9H1K6, Q9MBF8
Diamond homologs: A0A3G2LGI8, F1REV3, P0CE94, P26039, P54939, P59113, Q18685, Q54EW0, Q5R8M5, Q71LX4, Q9BQL6, Q9P6L5, Q9Y490, Q9Y4G6, Q9WU22, F1Q8X5, P0CE95, Q32LP0, Q86UX7, Q8CIB5, Q8K1B8, Q96AC1, Q9VZI3, O35763, P0CD60, P26038, P26040, P26041, P26042, P31976, P31977, Q2HJ49, Q54K81, Q6S5J6
SIGNOR signaling
35 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CDK5 | up-regulates | TLN1 | phosphorylation |
| TLN1 | “up-regulates activity” | “AIIB/b3 integrin” | binding |
| PTK2 | “up-regulates activity” | TLN1 | binding |
| TLN1 | “up-regulates activity” | ITGB1 | binding |
| TLN1 | “up-regulates activity” | “A1/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A2/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A3/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A4/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A5/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A6/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A8/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A9/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A10/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | “A11/b1 integrin” | binding |
| TLN1 | “up-regulates activity” | ITGB2 | binding |
| TLN1 | “up-regulates activity” | “AL/b2 integrin” | binding |
| TLN1 | “up-regulates activity” | “AM/b2 integrin” | binding |
| TLN1 | “up-regulates activity” | “AX/b2 integrin” | binding |
| TLN1 | “up-regulates activity” | “Av/b2 integrin” | binding |
| TLN1 | “up-regulates activity” | “AD/b2 integrin” | binding |
| TLN1 | “up-regulates activity” | ITGB3 | binding |
| TLN1 | “up-regulates activity” | “Av/b3 integrin” | binding |
| TLN1 | “up-regulates activity” | ITGB4 | binding |
| TLN1 | “up-regulates activity” | “A6/b4 integrin” | binding |
| TLN1 | “up-regulates activity” | ITGB5 | binding |
| TLN1 | “up-regulates activity” | “Av/b5 integrin” | binding |
| TLN1 | “up-regulates activity” | ITGB6 | binding |
| TLN1 | “up-regulates activity” | “Av/b6 integrin” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 179 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Dengue Virus Genome Translation and Replication | 6 | 13.6× | 2e-03 |
| Dengue Virus-Host Interactions | 12 | 3.9× | 1e-02 |
| Infectious disease | 19 | 3.4× | 2e-03 |
| Viral Infection Pathways | 15 | 3.3× | 1e-02 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
321 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 225 |
| Likely benign | 16 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1691453 | NM_006289.4(TLN1):c.7188+2T>C | Likely pathogenic |
SpliceAI
6988 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:35697912:ATGAT:A | acceptor_gain | 1.0000 |
| 9:35697913:TGAT:T | acceptor_gain | 1.0000 |
| 9:35697914:GAT:G | acceptor_gain | 1.0000 |
| 9:35697916:TCTGA:T | acceptor_loss | 1.0000 |
| 9:35697917:C:CA | acceptor_loss | 1.0000 |
| 9:35697917:C:CC | acceptor_gain | 1.0000 |
| 9:35697918:T:C | acceptor_loss | 1.0000 |
| 9:35697923:G:C | acceptor_gain | 1.0000 |
| 9:35697923:G:GC | acceptor_gain | 1.0000 |
| 9:35698038:GCTCA:G | donor_loss | 1.0000 |
| 9:35698039:CTCA:C | donor_loss | 1.0000 |
| 9:35698041:CACC:C | donor_loss | 1.0000 |
| 9:35698042:A:AC | donor_gain | 1.0000 |
| 9:35698043:C:CC | donor_gain | 1.0000 |
| 9:35698043:C:CG | donor_loss | 1.0000 |
| 9:35698168:GCAGC:G | acceptor_gain | 1.0000 |
| 9:35698169:CAGC:C | acceptor_gain | 1.0000 |
| 9:35698169:CAGCC:C | acceptor_gain | 1.0000 |
| 9:35698170:AGC:A | acceptor_gain | 1.0000 |
| 9:35698171:GC:G | acceptor_gain | 1.0000 |
| 9:35698172:CC:C | acceptor_gain | 1.0000 |
| 9:35698173:C:A | acceptor_loss | 1.0000 |
| 9:35698173:C:CC | acceptor_gain | 1.0000 |
| 9:35698173:C:T | acceptor_gain | 1.0000 |
| 9:35698174:T:A | acceptor_loss | 1.0000 |
| 9:35698178:C:CT | acceptor_gain | 1.0000 |
| 9:35698179:A:T | acceptor_gain | 1.0000 |
| 9:35698317:TCTCA:T | donor_loss | 1.0000 |
| 9:35698318:CTCA:C | donor_loss | 1.0000 |
| 9:35698319:TCAC:T | donor_loss | 1.0000 |
AlphaMissense
16465 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:35697852:A:G | L2522P | 1.000 |
| 9:35697861:C:G | R2519P | 1.000 |
| 9:35697865:C:G | A2518P | 1.000 |
| 9:35697873:A:G | L2515P | 1.000 |
| 9:35697891:A:G | L2509P | 1.000 |
| 9:35697907:C:G | A2504P | 1.000 |
| 9:35698135:A:G | L2470P | 1.000 |
| 9:35698148:C:G | A2466P | 1.000 |
| 9:35698327:A:G | L2456P | 1.000 |
| 9:35698378:A:G | L2439P | 1.000 |
| 9:35698381:A:G | L2438P | 1.000 |
| 9:35698381:A:T | L2438H | 1.000 |
| 9:35698411:G:T | A2428D | 1.000 |
| 9:35698412:C:G | A2428P | 1.000 |
| 9:35698423:A:G | L2424P | 1.000 |
| 9:35698466:C:G | A2410P | 1.000 |
| 9:35698474:A:G | L2407P | 1.000 |
| 9:35698487:C:G | A2403P | 1.000 |
| 9:35698627:A:G | L2393P | 1.000 |
| 9:35698638:C:A | W2389C | 1.000 |
| 9:35698638:C:G | W2389C | 1.000 |
| 9:35698640:A:G | W2389R | 1.000 |
| 9:35698640:A:T | W2389R | 1.000 |
| 9:35698857:A:G | L2359P | 1.000 |
| 9:35698870:C:G | A2355P | 1.000 |
| 9:35698888:C:G | A2349P | 1.000 |
| 9:35699073:C:G | A2320P | 1.000 |
| 9:35699105:A:G | L2309P | 1.000 |
| 9:35699382:A:G | L2283P | 1.000 |
| 9:35700227:G:C | S2208R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000049032 (9:35722738 A>G,T), RS1000058902 (9:35712412 G>A), RS1000074681 (9:35719301 A>C), RS1000246790 (9:35709315 CCAAAAAAA>C), RS1000482863 (9:35722448 G>A), RS1000535156 (9:35724308 G>A), RS1000622693 (9:35730746 T>G), RS1000779511 (9:35730392 T>G), RS1000795965 (9:35728674 T>C), RS1000858017 (9:35704229 G>A), RS1000925805 (9:35711152 T>A,C), RS1001025905 (9:35718118 C>T), RS1001055982 (9:35723893 G>A), RS1001077787 (9:35717933 G>A,T), RS1001335963 (9:35697497 G>A,T)
Disease associations
OMIM: gene MIM:186745 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| idiopathic spontaneous coronary artery dissection | Moderate | Autosomal dominant |
| thrombocytopenia | Limited | Autosomal dominant |
Mondo (3): capillary leak syndrome (MONDO:0001956), thrombocytopenia (MONDO:0002049), idiopathic spontaneous coronary artery dissection (MONDO:0007385)
Orphanet (1): Systemic capillary leak syndrome (Orphanet:188)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002122_3 | IgE levels in asthmatics | 8.000000e-06 |
| GCST004616_199 | Platelet distribution width | 3.000000e-10 |
| GCST010703_52 | Brain morphology (MOSTest) | 1.000000e-08 |
| GCST90002388_219 | Lymphocyte count | 8.000000e-17 |
| GCST90002393_375 | Monocyte count | 7.000000e-10 |
| GCST90002400_373 | Plateletcrit | 7.000000e-14 |
| GCST90002401_479 | Platelet distribution width | 8.000000e-25 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007984 | platelet component distribution width |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004587 | lymphocyte count |
| EFO:0005091 | monocyte count |
| EFO:0007985 | platelet crit |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D019559 | Capillary Leak Syndrome | C14.907.218 |
| D013921 | Thrombocytopenia | C15.378.140.855; C15.378.243.937 |
| C565153 | Coronary Artery Dissection, Spontaneous (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6067124 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2295795 | TLN1 | 0.00 | 0 | ||
| rs10814270 | TLN1 | 0.00 | 0 |
ChEMBL bioactivities
2 potent at pChembl≥5 of 2 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.38 | Kd | 41.84 | nM | CHEMBL5653589 |
| 7.38 | ED50 | 41.84 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 2 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149595: Binding affinity to human TLN1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0418 | uM |
CTD chemical–gene interactions
57 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases expression, increases expression, affects cotreatment | 3 |
| Benzo(a)pyrene | decreases methylation, increases expression, affects methylation | 3 |
| Cadmium Chloride | increases expression | 3 |
| bisphenol F | increases expression, affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | increases expression | 2 |
| 2-(4-(biphenyl-4-sulfonyl)-piperazin-1-yl)-6,7-dipropoxyquinazolin-4-yl-amine | decreases expression, decreases reaction, increases expression | 2 |
| Cisplatin | affects response to substance, increases reaction, increases response to substance | 2 |
| Aflatoxin B1 | decreases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, decreases expression, affects localization, increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| pentabromodiphenyl ether | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | increases reaction, increases response to substance | 1 |
| ciguatoxin 1B (CTX 1B) | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ICG 001 | decreases expression | 1 |
| bisphenol B | increases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | increases expression | 1 |
| benzyloxycarbonyl-valyl-alanyl-aspartic acid | increases reaction, increases response to substance | 1 |
| bisphenol S | increases expression | 1 |
| LDN 193189 | affects cotreatment, decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652637 | Binding | Binding affinity to human TLN1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B7ZY | Abcam Raji TLN1 KO | Cancer cell line | Male |
| CVCL_C0AS | Abcam THP-1 TLN1 KO | Cancer cell line | Male |
| CVCL_C7CF | Abcam PC-3 TLN1 KO | Cancer cell line | Male |
| CVCL_E0ZE | Ubigene NB4 TLN1 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
244 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00039858 | PHASE4 | COMPLETED | Evaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin |
| NCT00239733 | PHASE4 | TERMINATED | Anti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection |
| NCT00907478 | PHASE4 | COMPLETED | Study on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP) |
| NCT01727401 | PHASE4 | TERMINATED | Thromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia |
| NCT02032134 | PHASE4 | TERMINATED | Protocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia |
| NCT02267993 | PHASE4 | COMPLETED | Efficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients |
| NCT03633019 | PHASE4 | UNKNOWN | High-dose Use of rhTPO in CIT Patients |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04906083 | PHASE4 | UNKNOWN | Avatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia |
| NCT05217719 | PHASE4 | UNKNOWN | Effects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients |
| NCT05255003 | PHASE4 | RECRUITING | STrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis |
| NCT05382013 | PHASE4 | UNKNOWN | Efficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment |
| NCT05944458 | PHASE4 | COMPLETED | Efficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients |
| NCT06562738 | PHASE4 | RECRUITING | Clinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia |
| NCT00037791 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00039910 | PHASE3 | COMPLETED | Safety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia |
| NCT00073580 | PHASE3 | COMPLETED | Angiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE) |
| NCT00102323 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy |
| NCT00102336 | PHASE3 | COMPLETED | AMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy |
| NCT00116688 | PHASE3 | COMPLETED | Open Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) |
| NCT00128713 | PHASE3 | COMPLETED | Optimal Platelet Dose Strategy for Management of Thrombocytopenia |
| NCT00151866 | PHASE3 | COMPLETED | Efficacy of Transfusions With Platelets Stored in Platelet Additive Solution II Versus Plasma |
| NCT00261924 | PHASE3 | COMPLETED | Efficacy and Safety Study of Platelets Treated for Pathogen Inactivation and Stored for Up to Seven Days |
| NCT00415532 | PHASE3 | COMPLETED | Romiplostim (AMG 531) Versus Medical Standard of Care for Immune (Idiopathic) Thrombocytopenic Purpura |
| NCT00420914 | PHASE3 | TERMINATED | Strategies for Transfusion of Platelets (SToP) |
| NCT00501345 | PHASE3 | TERMINATED | Aspirin in Patients With Myocardial Infarction and Thrombocytopenia |
| NCT00508820 | PHASE3 | COMPLETED | An Open Label Study of Romiplostim in Adult Thrombocytopenic Subjects With ITP |
| NCT00678587 | PHASE3 | TERMINATED | Eltrombopag To Reduce The Need For Platelet Transfusion In Subjects With Chronic Liver Disease And Thrombocytopenia Undergoing Elective Invasive Procedures |
| NCT01438840 | PHASE3 | COMPLETED | Efficacy and Safety of Oral E5501 Plus Standard of Care for the Treatment of Thrombocytopenia in Adults With Chronic Immune Thrombocytopenia (Amendment 02) |
| NCT01444417 | PHASE3 | COMPLETED | Safety and Efficacy Study of Romiplostim to Treat Immune Thrombocytopenia (ITP) in Pediatric Patients |
| NCT01805648 | PHASE3 | UNKNOWN | Efficacy and Safety Study of Maintenance Treatment With rhTPO in Thrombocytopenic Subjects With ITP |
| NCT02244658 | PHASE3 | UNKNOWN | Recombinant Human Thrombopoietin (rhTPO) in Management of Chemotherapy-induced Thrombocytopenia in Acute Myelocytic Leukemia |
| NCT02389621 | PHASE3 | COMPLETED | Safety and Efficacy Study of Lusutrombopag for Thrombocytopenia in Patients With Chronic Liver Disease Undergoing Elective Invasive Procedures |
| NCT02444728 | PHASE3 | TERMINATED | Cyclophosphamide and Hydroxychloroquine for Thrombocytopenia in SLE |
| NCT02487563 | PHASE3 | COMPLETED | Prospective Study of Patients With Thrombocytopenia Following HSCT |
| NCT02578901 | PHASE3 | COMPLETED | American Trial Using Tranexamic Acid in Thrombocytopenia |
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| NCT03515096 | PHASE3 | COMPLETED | Eltrombopag vs. rhTPO to Increase Platelet Level After HSCT |
| NCT05563064 | PHASE3 | UNKNOWN | Effect of Herbal Formulation on Thrombocytes Count |
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Related Atlas pages
- Associated diseases: thrombocytopenia, idiopathic spontaneous coronary artery dissection
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): capillary leak syndrome, idiopathic spontaneous coronary artery dissection, thrombocytopenia