TMEM135
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Also known as FLJ22104PMP52
Summary
TMEM135 (transmembrane protein 135, HGNC:26167) is a protein-coding gene on chromosome 11q14.2, encoding Transmembrane protein 135 (Q86UB9). Involved in mitochondrial metabolism by regulating the balance between mitochondrial fusion and fission.
Predicted to enable lipid transporter activity. Predicted to be involved in several processes, including fatty acid derivative transport; fatty acid metabolic process; and long-chain fatty acid transport. Predicted to act upstream of or within several processes, including regulation of oxidative phosphorylation; response to food; and retinal pigment epithelium development. Predicted to be located in peroxisome. Predicted to be active in peroxisomal membrane.
Source: NCBI Gene 65084 — RefSeq curated summary.
At a glance
- Gene–disease (curated): neurodevelopmental disorder (Limited, GenCC)
- GWAS associations: 34
- Clinical variants (ClinVar): 86 total
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_022918
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:26167 |
| Approved symbol | TMEM135 |
| Name | transmembrane protein 135 |
| Location | 11q14.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22104, PMP52 |
| Ensembl gene | ENSG00000166575 |
| Ensembl biotype | protein_coding |
| OMIM | 616360 |
| Entrez | 65084 |
Gene structure
Transcript identifiers
Ensembl transcripts: 22 — 18 protein_coding, 4 retained_intron
ENST00000305494, ENST00000340353, ENST00000525018, ENST00000526733, ENST00000528861, ENST00000529023, ENST00000531643, ENST00000531800, ENST00000532959, ENST00000854940, ENST00000854941, ENST00000854942, ENST00000854943, ENST00000854944, ENST00000854945, ENST00000854946, ENST00000934696, ENST00000934697, ENST00000954969, ENST00000954970, ENST00000954971, ENST00000954972
RefSeq mRNA: 2 — MANE Select: NM_022918
NM_001168724, NM_022918
CCDS: CCDS53692, CCDS8280
Canonical transcript exons
ENST00000305494 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001104320 | 87313425 | 87313488 |
| ENSE00001104328 | 87302296 | 87302442 |
| ENSE00001104334 | 87236638 | 87236684 |
| ENSE00001104340 | 87295782 | 87295823 |
| ENSE00001104341 | 87318137 | 87318235 |
| ENSE00001104345 | 87305936 | 87306005 |
| ENSE00001104348 | 87309505 | 87309672 |
| ENSE00001104350 | 87314471 | 87314547 |
| ENSE00002146331 | 87037934 | 87038186 |
| ENSE00003497770 | 87067694 | 87067821 |
| ENSE00003500699 | 87321201 | 87328824 |
| ENSE00003524054 | 87091362 | 87091395 |
| ENSE00003531210 | 87157341 | 87157406 |
| ENSE00003636753 | 87071523 | 87071615 |
| ENSE00003679067 | 87319310 | 87319377 |
Expression profiles
Bgee: expression breadth ubiquitous, 279 present calls, max score 96.10.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 38.0617 / max 287.6289, expressed in 1815 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 116141 | 16.8068 | 1743 |
| 116139 | 10.9024 | 1771 |
| 116138 | 7.9411 | 1644 |
| 116140 | 2.1980 | 1089 |
| 116142 | 0.2134 | 61 |
Top tissues by expression
290 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 96.10 | gold quality |
| adrenal tissue | UBERON:0018303 | 95.99 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.44 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 93.49 | gold quality |
| endothelial cell | CL:0000115 | 92.08 | gold quality |
| duodenum | UBERON:0002114 | 90.45 | gold quality |
| colonic epithelium | UBERON:0000397 | 90.06 | gold quality |
| islet of Langerhans | UBERON:0000006 | 89.47 | gold quality |
| adipose tissue | UBERON:0001013 | 89.35 | gold quality |
| parietal pleura | UBERON:0002400 | 89.03 | gold quality |
| connective tissue | UBERON:0002384 | 88.82 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 88.60 | gold quality |
| tibia | UBERON:0000979 | 88.50 | gold quality |
| mammary gland | UBERON:0001911 | 88.46 | gold quality |
| pericardium | UBERON:0002407 | 88.22 | gold quality |
| adrenal gland | UBERON:0002369 | 88.19 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 87.95 | gold quality |
| left adrenal gland | UBERON:0001234 | 87.67 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 87.63 | gold quality |
| synovial joint | UBERON:0002217 | 87.57 | gold quality |
| right adrenal gland | UBERON:0001233 | 87.53 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 87.51 | gold quality |
| colonic mucosa | UBERON:0000317 | 87.18 | gold quality |
| jejunum | UBERON:0002115 | 87.15 | gold quality |
| adrenal cortex | UBERON:0001235 | 86.97 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 86.90 | gold quality |
| secondary oocyte | CL:0000655 | 86.49 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 86.46 | gold quality |
| mammary duct | UBERON:0001765 | 86.44 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 86.28 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 6.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
304 targeting TMEM135, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-29A-3P | 100.00 | 73.11 | 1835 |
| HSA-MIR-29B-3P | 100.00 | 73.18 | 1833 |
| HSA-MIR-29C-3P | 100.00 | 73.15 | 1833 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-196A-1-3P | 99.99 | 72.15 | 2772 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 2)
- TMEM135 regulates primary ciliogenesis through modulation of intracellular cholesterol distribution. (PMID:32157776)
- MiR-100-5p inhibits osteogenic differentiation of human bone mesenchymal stromal cells by targeting TMEM135. (PMID:35947339)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tmem135 | ENSDARG00000069157 |
| mus_musculus | Tmem135 | ENSMUSG00000039428 |
| rattus_norvegicus | Tmem135 | ENSRNOG00000016815 |
| drosophila_melanogaster | CG11737 | FBGN0037592 |
| drosophila_melanogaster | CG31259 | FBGN0051259 |
| drosophila_melanogaster | CG31454 | FBGN0051454 |
| caenorhabditis_elegans | WBGENE00019345 |
Protein
Protein identifiers
Transmembrane protein 135 — Q86UB9 (reviewed: Q86UB9)
Alternative names: Peroxisomal membrane protein 52
All UniProt accessions (4): E9PIS2, E9PJX0, E9PQL0, Q86UB9
UniProt curated annotations — full annotation on UniProt →
Function. Involved in mitochondrial metabolism by regulating the balance between mitochondrial fusion and fission. May act as a regulator of mitochondrial fission that promotes DNM1L-dependent fission through activation of DNM1L. May be involved in peroxisome organization.
Subcellular location. Mitochondrion membrane. Peroxisome membrane.
Similarity. Belongs to the TMEM135 family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86UB9-1 | 1 | yes |
| Q86UB9-2 | 2 |
RefSeq proteins (2): NP_001162195, NP_075069* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR026749 | Tmem135 | Family |
| IPR031926 | TMEM135_N | Domain |
Pfam: PF02466, PF15982
UniProt features (12 total): transmembrane region 6, sequence variant 3, chain 1, sequence conflict 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86UB9-F1 | 86.37 | 0.62 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 241 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, TAATAAT_MIR126, FARMER_BREAST_CANCER_CLUSTER_7, GOBP_RESPONSE_TO_COLD, TGCTGCT_MIR15A_MIR16_MIR15B_MIR195_MIR424_MIR497, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_RESPONSE_TO_FOOD, TGACCTY_ERR1_Q2, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, GOBP_GENERATION_OF_PRECURSOR_METABOLITES_AND_ENERGY, GOBP_REGULATION_OF_OXIDATIVE_PHOSPHORYLATION, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GOBP_REGULATION_OF_MITOCHONDRION_ORGANIZATION
GO Biological Process (13): regulation of oxidative phosphorylation (GO:0002082), retinal pigment epithelium development (GO:0003406), unsaturated fatty acid biosynthetic process (GO:0006636), mitochondrion organization (GO:0007005), peroxisome organization (GO:0007031), response to cold (GO:0009409), long-chain fatty acid transport (GO:0015909), response to food (GO:0032094), alpha-linolenic acid metabolic process (GO:0036109), long-chain fatty acid biosynthetic process (GO:0042759), regulation of mitochondrial fission (GO:0090140), fatty acid derivative biosynthetic process (GO:1901570), fatty acid derivative transport (GO:1901571)
GO Molecular Function (2): lipid carrier activity (GO:0005319), protein binding (GO:0005515)
GO Cellular Component (7): peroxisome (GO:0005777), peroxisomal membrane (GO:0005778), lipid droplet (GO:0005811), mitochondrial membrane (GO:0031966), mitochondrion (GO:0005739), endomembrane system (GO:0012505), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| fatty acid biosynthetic process | 2 |
| unsaturated fatty acid metabolic process | 2 |
| organelle organization | 2 |
| long-chain fatty acid metabolic process | 2 |
| cellular anatomical structure | 2 |
| oxidative phosphorylation | 1 |
| regulation of aerobic respiration | 1 |
| retina development in camera-type eye | 1 |
| epithelium development | 1 |
| response to stress | 1 |
| response to temperature stimulus | 1 |
| fatty acid transport | 1 |
| response to nutrient levels | 1 |
| response to chemical | 1 |
| olefinic compound metabolic process | 1 |
| mitochondrial fission | 1 |
| regulation of mitochondrion organization | 1 |
| regulation of anatomical structure morphogenesis | 1 |
| lipid biosynthetic process | 1 |
| fatty acid derivative metabolic process | 1 |
| lipid transport | 1 |
| molecular carrier activity | 1 |
| binding | 1 |
| microbody | 1 |
| peroxisome | 1 |
| microbody membrane | 1 |
| intracellular membraneless organelle | 1 |
| mitochondrion | 1 |
| mitochondrial envelope | 1 |
| organelle membrane | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
708 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TMEM135 | PXMP4 | Q9Y6I8 | 690 |
| TMEM135 | TIMM17A | Q99595 | 664 |
| TMEM135 | DEUP1 | Q05D60 | 647 |
| TMEM135 | MAN2A1 | Q16706 | 608 |
| TMEM135 | GPATCH1 | Q9BRR8 | 542 |
| TMEM135 | ZBTB40 | Q9NUA8 | 536 |
| TMEM135 | WNT16 | Q9UBV4 | 517 |
| TMEM135 | TRMT11 | Q7Z4G4 | 471 |
| TMEM135 | MPV17L2 | Q567V2 | 468 |
| TMEM135 | CCDC170 | Q8IYT3 | 458 |
| TMEM135 | MACIR | Q96GV9 | 448 |
| TMEM135 | SLC12A4 | Q9UP95 | 420 |
| TMEM135 | LRRC59 | Q96AG4 | 419 |
| TMEM135 | PXMP2 | Q9NR77 | 412 |
| TMEM135 | ATAD1 | Q8NBU5 | 403 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMPD3 | ENDOD1 | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM135 | H2BC21 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TMEM135 | BIRC6 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NBAS | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM223 | psi-mi:“MI:0914”(association) | 0.350 | |
| ATF1 | MYO1C | psi-mi:“MI:0914”(association) | 0.350 |
| CASP3 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| CTNNA1 | KIF2A | psi-mi:“MI:0914”(association) | 0.350 |
| MYC | AP3B1 | psi-mi:“MI:0914”(association) | 0.350 |
| SOX2 | IGF2BP3 | psi-mi:“MI:0914”(association) | 0.350 |
| MYB | NOP56 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (12): TMEM135 (Affinity Capture-MS), TMEM135 (Affinity Capture-MS), TMEM135 (Proximity Label-MS), TMEM135 (Proximity Label-MS), TMEM135 (Proximity Label-MS), TMEM135 (Proximity Label-MS), TMEM135 (Proximity Label-MS), TMEM135 (Proximity Label-MS), TMEM135 (Affinity Capture-MS), BIRC6 (Affinity Capture-MS), TMEM135 (Cross-Linking-MS (XL-MS)), TMEM135 (Affinity Capture-RNA)
ESM2 similar proteins: A2RVP7, A2VDV9, A4IFL0, O14925, O35093, O35094, O35857, O43615, O60830, P0CR88, P0CR89, P59670, Q02921, Q2HJE9, Q2KHV4, Q2UAP8, Q38820, Q3B8P0, Q3ZBE6, Q4V8S3, Q5BIN4, Q5M7K0, Q5R5H4, Q5RDD0, Q5REX0, Q5SRD1, Q5U4F4, Q5U4U5, Q5XH94, Q5XJY4, Q5ZLL0, Q6BZY4, Q6GQ39, Q6INU6, Q6NWD4, Q7T2P6, Q86UB9, Q9C1E8, Q9CQ85, Q9CYV5
Diamond homologs: Q3ZBE6, Q5U4F4, Q6GQ39, Q86UB9, Q95QD1, Q9CYV5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
86 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 45 |
| Likely benign | 6 |
| Benign | 6 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3515 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:87090683:C:G | donor_gain | 1.0000 |
| 11:87128464:G:GT | donor_gain | 1.0000 |
| 11:87128474:G:GT | donor_gain | 1.0000 |
| 11:87128475:A:T | donor_gain | 1.0000 |
| 11:87157404:GAA:G | donor_gain | 1.0000 |
| 11:87157407:G:GG | donor_gain | 1.0000 |
| 11:87157412:A:G | donor_gain | 1.0000 |
| 11:87236632:TTACA:T | acceptor_loss | 1.0000 |
| 11:87236633:TACA:T | acceptor_loss | 1.0000 |
| 11:87236634:ACAG:A | acceptor_loss | 1.0000 |
| 11:87236635:CA:C | acceptor_loss | 1.0000 |
| 11:87236636:A:T | acceptor_loss | 1.0000 |
| 11:87236637:G:GT | acceptor_loss | 1.0000 |
| 11:87302397:G:GT | donor_gain | 1.0000 |
| 11:87302425:G:GT | donor_gain | 1.0000 |
| 11:87302426:A:T | donor_gain | 1.0000 |
| 11:87302443:G:GG | donor_gain | 1.0000 |
| 11:87306001:TTAAA:T | donor_gain | 1.0000 |
| 11:87306004:AA:A | donor_gain | 1.0000 |
| 11:87306004:AAG:A | donor_loss | 1.0000 |
| 11:87306006:G:GG | donor_gain | 1.0000 |
| 11:87306006:G:T | donor_loss | 1.0000 |
| 11:87306007:T:A | donor_loss | 1.0000 |
| 11:87306008:AA:A | donor_loss | 1.0000 |
| 11:87318132:T:TA | acceptor_gain | 1.0000 |
| 11:87318132:TGCA:T | acceptor_loss | 1.0000 |
| 11:87318133:GCAG:G | acceptor_loss | 1.0000 |
| 11:87318134:CA:C | acceptor_loss | 1.0000 |
| 11:87318135:A:AC | acceptor_loss | 1.0000 |
| 11:87318135:A:AG | acceptor_gain | 1.0000 |
AlphaMissense
3008 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:87071615:G:T | R121M | 1.000 |
| 11:87295817:C:A | A182E | 1.000 |
| 11:87309649:G:C | G305R | 1.000 |
| 11:87309650:G:A | G305D | 1.000 |
| 11:87309661:A:C | S309R | 1.000 |
| 11:87309663:T:A | S309R | 1.000 |
| 11:87309663:T:G | S309R | 1.000 |
| 11:87314482:G:C | G338R | 1.000 |
| 11:87067772:T:C | F74L | 0.999 |
| 11:87067774:T:A | F74L | 0.999 |
| 11:87067774:T:G | F74L | 0.999 |
| 11:87071615:G:C | R121T | 0.999 |
| 11:87091362:G:C | R121S | 0.999 |
| 11:87091362:G:T | R121S | 0.999 |
| 11:87091373:T:A | L125H | 0.999 |
| 11:87091373:T:C | L125P | 0.999 |
| 11:87236684:G:T | R170M | 0.999 |
| 11:87309529:G:A | G265R | 0.999 |
| 11:87309529:G:C | G265R | 0.999 |
| 11:87309529:G:T | G265W | 0.999 |
| 11:87309530:G:A | G265E | 0.999 |
| 11:87309638:G:A | G301E | 0.999 |
| 11:87309647:T:C | L304P | 0.999 |
| 11:87313434:T:C | C316R | 0.999 |
| 11:87313435:G:A | C316Y | 0.999 |
| 11:87313436:C:G | C316W | 0.999 |
| 11:87313443:C:A | R319S | 0.999 |
| 11:87313486:C:A | A333D | 0.999 |
| 11:87313488:G:A | G334R | 0.999 |
| 11:87313488:G:C | G334R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000000640 (11:87258756 A>C), RS1000008910 (11:87270652 T>A), RS1000029158 (11:87325501 T>G), RS1000043494 (11:87127912 A>C), RS1000048233 (11:87172308 G>A), RS1000049748 (11:87094527 C>A,T), RS1000078734 (11:87230740 G>T), RS1000087966 (11:87145504 T>C), RS1000091271 (11:87276558 T>G), RS1000092384 (11:87311405 A>G), RS1000107156 (11:87166298 T>G), RS1000120371 (11:87134145 A>T), RS1000123709 (11:87055911 A>G), RS1000128874 (11:87225904 T>C), RS1000131906 (11:87270312 G>A,C)
Disease associations
OMIM: gene MIM:616360 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder | Limited | Autosomal recessive |
Mondo (1): neurodevelopmental disorder (MONDO:0700092)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
34 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002333_6 | Bone properties (heel) | 5.000000e-26 |
| GCST002335_6 | Bone properties (heel) | 8.000000e-14 |
| GCST004350_12 | Bone ultrasound measurement (velocity of sound) | 4.000000e-14 |
| GCST004350_14 | Bone ultrasound measurement (velocity of sound) | 1.000000e-08 |
| GCST004350_19 | Bone ultrasound measurement (velocity of sound) | 4.000000e-07 |
| GCST004351_1 | Bone ultrasound measurement (broadband ultrasound attenuation) | 4.000000e-11 |
| GCST004351_22 | Bone ultrasound measurement (broadband ultrasound attenuation) | 3.000000e-07 |
| GCST005796_20 | Lumbar spine bone mineral density | 2.000000e-08 |
| GCST006030_7 | Chloride levels | 4.000000e-08 |
| GCST006032_6 | Sodium levels | 6.000000e-12 |
| GCST006288_187 | Heel bone mineral density | 3.000000e-30 |
| GCST006288_188 | Heel bone mineral density | 4.000000e-08 |
| GCST006288_376 | Heel bone mineral density | 3.000000e-49 |
| GCST006288_377 | Heel bone mineral density | 6.000000e-10 |
| GCST006288_47 | Heel bone mineral density | 4.000000e-77 |
| GCST006288_48 | Heel bone mineral density | 6.000000e-17 |
| GCST006297_5 | Response to perphenazine in schizophrenia | 9.000000e-06 |
| GCST006433_1553 | Heel bone mineral density | 9.000000e-230 |
| GCST006522_17 | Upper eyelid sagging severity | 3.000000e-06 |
| GCST006979_413 | Heel bone mineral density | 2.000000e-253 |
| GCST006979_414 | Heel bone mineral density | 1.000000e-20 |
| GCST006980_11 | Fracture | 7.000000e-27 |
| GCST007159_7 | Corneal astigmatism | 4.000000e-06 |
| GCST007616_2 | Calcaneus stiffness index | 4.000000e-08 |
| GCST009115_6 | Heel bone mineral density variance | 2.000000e-12 |
| GCST009120_6 | Heel bone mineral density | 4.000000e-98 |
| GCST009723_53 | Vertical cup-disc ratio (adjusted for vertical disc diameter) | 1.000000e-08 |
| GCST009724_78 | Vertical cup-disc ratio (multi-trait analysis) | 1.000000e-11 |
| GCST010796_4801 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_4802 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
EFO canonical traits (9, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005654 | velocity of sound measurement |
| EFO:0004514 | bone quantitative ultrasound measurement |
| EFO:0007701 | spine bone mineral density |
| EFO:0009282 | sodium measurement |
| EFO:0009270 | heel bone mineral density |
| EFO:1002040 | Corneal astigmatism |
| EFO:0006939 | cup-to-disc ratio measurement |
| EFO:0004327 | electrocardiography |
| EFO:0004531 | urate measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 5 |
| Valproic Acid | affects expression, decreases expression, increases expression | 3 |
| Aflatoxin B1 | affects expression, decreases expression | 3 |
| methylmercuric chloride | decreases expression | 2 |
| bisphenol A | increases expression | 2 |
| Arsenic | decreases expression, increases abundance, affects methylation, affects cotreatment | 2 |
| Cyclosporine | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| dicrotophos | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| K 7174 | decreases expression | 1 |
| ICG 001 | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Cadmium | increases expression, increases abundance | 1 |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Associated diseases: neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): bone fracture