TMEM25
gene geneOn this page
Also known as FLJ14399
Summary
TMEM25 (transmembrane protein 25, HGNC:25890) is a protein-coding gene on chromosome 11q23.3, encoding Transmembrane protein 25 (Q86YD3). In neurons, modulates the degradation of NMDA receptor GRIN2B subunit.
Predicted to be involved in negative regulation of excitatory postsynaptic potential and regulation of protein stability. Predicted to be located in late endosome and lysosome.
Source: NCBI Gene 84866 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 89 total
- Phenotypes (HPO): 1
- MANE Select transcript:
NM_032780
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25890 |
| Approved symbol | TMEM25 |
| Name | transmembrane protein 25 |
| Location | 11q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ14399 |
| Ensembl gene | ENSG00000149582 |
| Ensembl biotype | protein_coding |
| OMIM | 613934 |
| Entrez | 84866 |
Gene structure
Transcript identifiers
Ensembl transcripts: 47 — 32 protein_coding, 7 retained_intron, 6 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay
ENST00000313236, ENST00000354064, ENST00000354284, ENST00000359862, ENST00000411589, ENST00000442938, ENST00000524522, ENST00000524725, ENST00000525118, ENST00000525129, ENST00000525298, ENST00000526853, ENST00000526941, ENST00000526973, ENST00000527267, ENST00000527785, ENST00000528373, ENST00000528934, ENST00000529001, ENST00000529176, ENST00000530423, ENST00000531494, ENST00000532749, ENST00000532762, ENST00000533102, ENST00000533137, ENST00000533587, ENST00000533627, ENST00000533689, ENST00000534181, ENST00000872237, ENST00000872238, ENST00000872239, ENST00000872240, ENST00000872241, ENST00000872242, ENST00000931619, ENST00000931620, ENST00000931621, ENST00000931622, ENST00000931623, ENST00000931624, ENST00000947267, ENST00000947268, ENST00000947269, ENST00000947270, ENST00000947271
RefSeq mRNA: 8 — MANE Select: NM_032780
NM_001144034, NM_001144035, NM_001144036, NM_001144037, NM_001144038, NM_001318755, NM_001318757, NM_032780
CCDS: CCDS44745, CCDS44746, CCDS44747, CCDS44748, CCDS81630, CCDS8398
Canonical transcript exons
ENST00000313236 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000991515 | 118533420 | 118533551 |
| ENSE00002149476 | 118531192 | 118531234 |
| ENSE00002200185 | 118534507 | 118535829 |
| ENSE00003522744 | 118531775 | 118531871 |
| ENSE00003534732 | 118534029 | 118534129 |
| ENSE00003538966 | 118533857 | 118533887 |
| ENSE00003611707 | 118532150 | 118532461 |
| ENSE00003634356 | 118532917 | 118533207 |
| ENSE00003634538 | 118534266 | 118534355 |
Expression profiles
Bgee: expression breadth ubiquitous, 199 present calls, max score 95.49.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.4115 / max 72.8318, expressed in 1492 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 117010 | 7.1373 | 1481 |
| 117009 | 0.1985 | 86 |
| 117012 | 0.0483 | 14 |
| 117013 | 0.0169 | 6 |
| 117014 | 0.0104 | 4 |
Top tissues by expression
248 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right hemisphere of cerebellum | UBERON:0014890 | 95.49 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 95.09 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.99 | gold quality |
| cerebellum | UBERON:0002037 | 94.08 | gold quality |
| right frontal lobe | UBERON:0002810 | 93.39 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 93.07 | gold quality |
| prefrontal cortex | UBERON:0000451 | 92.57 | gold quality |
| cortical plate | UBERON:0005343 | 91.64 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 91.14 | gold quality |
| nucleus accumbens | UBERON:0001882 | 91.00 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.84 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 90.40 | gold quality |
| pituitary gland | UBERON:0000007 | 90.25 | gold quality |
| frontal cortex | UBERON:0001870 | 90.25 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.20 | gold quality |
| neocortex | UBERON:0001950 | 90.18 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 90.05 | gold quality |
| right adrenal gland | UBERON:0001233 | 89.94 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 89.85 | gold quality |
| left adrenal gland | UBERON:0001234 | 89.82 | gold quality |
| thoracic aorta | UBERON:0001515 | 89.74 | gold quality |
| ascending aorta | UBERON:0001496 | 89.73 | gold quality |
| putamen | UBERON:0001874 | 89.67 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 89.43 | gold quality |
| ganglionic eminence | UBERON:0004023 | 89.23 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 89.21 | gold quality |
| hypothalamus | UBERON:0001898 | 89.13 | gold quality |
| small intestine | UBERON:0002108 | 88.18 | gold quality |
| islet of Langerhans | UBERON:0000006 | 88.12 | gold quality |
| adrenal cortex | UBERON:0001235 | 88.09 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.28 |
| E-GEOD-100618 | no | 219.68 |
| E-GEOD-99795 | no | 110.37 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
63 targeting TMEM25, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4476 | 100.00 | 68.18 | 2030 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-548P | 99.98 | 72.25 | 3784 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-218-5P | 99.93 | 72.22 | 2103 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-636 | 99.80 | 69.58 | 1500 |
| HSA-MIR-323A-3P | 99.79 | 70.30 | 1739 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-34B-5P | 99.78 | 67.56 | 1175 |
| HSA-MIR-449C-5P | 99.78 | 67.63 | 1168 |
| HSA-MIR-370-5P | 99.78 | 66.81 | 706 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
Literature-anchored findings (GeneRIF, showing 5)
- TMEM25 may be a useful tumor marker for favorable prognosis in breast cancer. (PMID:19776672)
- TMEM25 hypermethylation might play a significant role in altering expression of this gene in colorectal cancer. (PMID:23324576)
- Human-biased TMEM25 expression promotes expansion of neural progenitor cells to alter cortical structure in the developing brain. (PMID:37846797)
- TMEM25 is a Par3-binding protein that attenuates claudin assembly during tight junction development. (PMID:38177906)
- Multidimensional comprehensive and integrated analysis of the potential function of TMEM25 in renal clear cell carcinoma with low expression status. (PMID:38189809)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ENSDARG00000101186 | |
| mus_musculus | Tmem25 | ENSMUSG00000002032 |
| rattus_norvegicus | Tmem25 | ENSRNOG00000014218 |
Paralogs (16): CD22 (ENSG00000012124), SIGLEC1 (ENSG00000088827), SIGLEC8 (ENSG00000105366), CD33 (ENSG00000105383), SIGLEC6 (ENSG00000105492), MAG (ENSG00000105695), SIGLEC9 (ENSG00000129450), SIGLEC10 (ENSG00000142512), SIGLEC11 (ENSG00000161640), SIGLEC16 (ENSG00000161643), SIGLEC7 (ENSG00000168995), SIGLECL1 (ENSG00000179213), SIGLEC15 (ENSG00000197046), SIGLEC14 (ENSG00000254415), SIGLEC12 (ENSG00000254521), SIGLEC5 (ENSG00000268500)
Protein
Protein identifiers
Transmembrane protein 25 — Q86YD3 (reviewed: Q86YD3)
All UniProt accessions (11): Q86YD3, E9PI73, E9PID6, E9PIE6, E9PIR4, E9PIT4, E9PK43, E9PK88, E9PKP3, H0YC87, H0YD63
UniProt curated annotations — full annotation on UniProt →
Function. In neurons, modulates the degradation of NMDA receptor GRIN2B subunit. Plays a role in the regulation of neuronal excitability.
Subunit / interactions. Interacts with GRIN2B.
Subcellular location. Cell membrane Cell membrane Secreted Secreted Late endosome. Lysosome.
Tissue specificity. Expressed throughout the brain with higher levels in the pyramidal cell layer of the hippocampal CA1 and CA3 regions. Also highly expressed within the hippocampal dentate gyrus region and cerebellum and in scattered neurons in the cerebral cortex.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86YD3-1 | 1 | yes |
| Q86YD3-2 | 2 | |
| Q86YD3-3 | 3 | |
| Q86YD3-4 | 4 | |
| Q86YD3-5 | 5 |
RefSeq proteins (8): NP_001137506, NP_001137507, NP_001137508, NP_001137509, NP_001137510, NP_001305684, NP_001305686, NP_116169* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007110 | Ig-like_dom | Domain |
| IPR013162 | CD80_C2-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR042864 | TMEM25 | Family |
Pfam: PF08205
UniProt features (21 total): glycosylation site 5, splice variant 4, sequence variant 2, topological domain 2, signal peptide 1, chain 1, disulfide bond 1, sequence conflict 1, transmembrane region 1, domain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86YD3-F1 | 62.47 | 0.20 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 52–107
Glycosylation sites (5): 175, 192, 205, 106, 162
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 88 (showing top):
CAGCTG_AP4_Q5, GOBP_CELL_CELL_SIGNALING, GOBP_REGULATION_OF_POSTSYNAPTIC_MEMBRANE_POTENTIAL, GOBP_MODULATION_OF_EXCITATORY_POSTSYNAPTIC_POTENTIAL, GOBP_REGULATION_OF_NERVOUS_SYSTEM_PROCESS, GOBP_REGULATION_OF_PROTEIN_STABILITY, GOBP_SYNAPTIC_SIGNALING, GOBP_REGULATION_OF_SYSTEM_PROCESS, LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN, AP2_Q6_01, GOBP_REGULATION_OF_MEMBRANE_POTENTIAL, E2F1_Q3_01, AAGCACA_MIR218, SMAD4_Q6, DODD_NASOPHARYNGEAL_CARCINOMA_DN
GO Biological Process (2): regulation of protein stability (GO:0031647), negative regulation of excitatory postsynaptic potential (GO:0090394)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (6): extracellular region (GO:0005576), lysosome (GO:0005764), late endosome (GO:0005770), plasma membrane (GO:0005886), endosome (GO:0005768), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| regulation of biological quality | 1 |
| negative regulation of biological process | 1 |
| excitatory postsynaptic potential | 1 |
| modulation of excitatory postsynaptic potential | 1 |
| binding | 1 |
| lytic vacuole | 1 |
| endosome | 1 |
| membrane | 1 |
| cell periphery | 1 |
| endomembrane system | 1 |
| cytoplasmic vesicle | 1 |
Protein interactions and networks
STRING
592 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TMEM25 | TMEM207 | Q6UWW9 | 650 |
| TMEM25 | RTP3 | Q9BQQ7 | 571 |
| TMEM25 | TMEM116 | Q8NCL8 | 543 |
| TMEM25 | TMEM213 | A2RRL7 | 542 |
| TMEM25 | NDC1 | Q9BTX1 | 541 |
| TMEM25 | ANKRD13B | Q86YJ7 | 533 |
| TMEM25 | TMEM91 | Q6ZNR0 | 529 |
| TMEM25 | CDC50B | Q3MIR4 | 493 |
| TMEM25 | PIP5KL1 | Q5T9C9 | 491 |
| TMEM25 | TMEM45A | Q9NWC5 | 483 |
| TMEM25 | TMEM88 | Q6PEY1 | 468 |
| TMEM25 | RTN4RL2 | Q86UN3 | 456 |
| TMEM25 | PHLDB1 | Q86UU1 | 447 |
| TMEM25 | SEZ6L2 | Q6UXD5 | 444 |
| TMEM25 | EML1 | O00423 | 440 |
IntAct
18 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| LDHC | LDHA | psi-mi:“MI:0914”(association) | 0.770 |
| TMEM25 | GLRX3 | psi-mi:“MI:0915”(physical association) | 0.670 |
| GLRX3 | TMEM25 | psi-mi:“MI:0915”(physical association) | 0.670 |
| RABGGTB | TMEM25 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TMEM25 | PCNA | psi-mi:“MI:0915”(physical association) | 0.370 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM25 | NME4 | psi-mi:“MI:0914”(association) | 0.350 |
| ZNF302 | DMC1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM25 | CRLF1 | psi-mi:“MI:0914”(association) | 0.350 |
| MAGEB4 | PIGR | psi-mi:“MI:0914”(association) | 0.350 |
| NUP35 | CDK14 | psi-mi:“MI:0914”(association) | 0.350 |
| RDH11 | HK1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM25 | ATE1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (239): TMEM25 (Two-hybrid), TMEM25 (Two-hybrid), TUBB8 (Affinity Capture-MS), HSPA5 (Affinity Capture-MS), GYLTL1B (Affinity Capture-MS), CACNA2D2 (Affinity Capture-MS), CES3 (Affinity Capture-MS), WDR60 (Affinity Capture-MS), ALDH1L2 (Affinity Capture-MS), EHD1 (Affinity Capture-MS), TMEM132A (Affinity Capture-MS), PCSK6 (Affinity Capture-MS), NOMO3 (Affinity Capture-MS), LPCAT4 (Affinity Capture-MS), ENTPD6 (Affinity Capture-MS)
ESM2 similar proteins: A1L3C1, A2RRU4, A6QM06, A6QNS9, F1LQY6, O94827, P29372, P29590, P97260, Q01113, Q02833, Q04841, Q12770, Q13505, Q29RM4, Q32KT5, Q32L49, Q3UGX3, Q4R5F9, Q5BK01, Q5I0I4, Q5MNU5, Q5SQH8, Q66T02, Q69Z89, Q6GQT6, Q6RFZ7, Q6UXT9, Q6ZN54, Q70EL4, Q7Z6G3, Q86WI3, Q86YD3, Q8IW40, Q8N1F8, Q8N531, Q8N9H8, Q8TCX5, Q91ZP9, Q920N2
Diamond homologs: Q86YD3, Q9DCF1
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
89 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 73 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1700 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:118532916:G:GA | acceptor_gain | 1.0000 |
| 11:118532995:T:TA | acceptor_gain | 1.0000 |
| 11:118533073:T:TA | acceptor_gain | 1.0000 |
| 11:118533207:GG:G | donor_loss | 1.0000 |
| 11:118533208:G:C | donor_loss | 1.0000 |
| 11:118533209:T:G | donor_loss | 1.0000 |
| 11:118534023:CTGTA:C | acceptor_loss | 1.0000 |
| 11:118534024:T:TA | acceptor_gain | 1.0000 |
| 11:118534024:TGTA:T | acceptor_loss | 1.0000 |
| 11:118534025:GTA:G | acceptor_loss | 1.0000 |
| 11:118534026:TA:T | acceptor_loss | 1.0000 |
| 11:118534027:A:AC | acceptor_loss | 1.0000 |
| 11:118534027:A:AG | acceptor_gain | 1.0000 |
| 11:118534027:AGT:A | acceptor_gain | 1.0000 |
| 11:118534028:G:GC | acceptor_gain | 1.0000 |
| 11:118534028:GT:G | acceptor_gain | 1.0000 |
| 11:118534028:GTG:G | acceptor_gain | 1.0000 |
| 11:118534028:GTGA:G | acceptor_gain | 1.0000 |
| 11:118534028:GTGAC:G | acceptor_gain | 1.0000 |
| 11:118534125:CAGAG:C | donor_loss | 1.0000 |
| 11:118534127:G:GT | donor_gain | 1.0000 |
| 11:118534127:GAG:G | donor_gain | 1.0000 |
| 11:118534129:GG:G | donor_loss | 1.0000 |
| 11:118534130:GT:G | donor_loss | 1.0000 |
| 11:118534131:T:A | donor_loss | 1.0000 |
| 11:118534260:A:AG | acceptor_gain | 1.0000 |
| 11:118534261:A:G | acceptor_gain | 1.0000 |
| 11:118534264:A:AG | acceptor_gain | 1.0000 |
| 11:118534265:G:GA | acceptor_gain | 1.0000 |
| 11:118534265:GCA:G | acceptor_gain | 1.0000 |
AlphaMissense
2329 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:118532272:T:A | W65R | 0.991 |
| 11:118532272:T:C | W65R | 0.991 |
| 11:118532274:G:C | W65C | 0.990 |
| 11:118532274:G:T | W65C | 0.990 |
| 11:118533027:T:A | W165R | 0.990 |
| 11:118533027:T:C | W165R | 0.990 |
| 11:118532398:T:A | C107S | 0.987 |
| 11:118532399:G:C | C107S | 0.987 |
| 11:118532400:C:G | C107W | 0.986 |
| 11:118532227:T:C | F50L | 0.983 |
| 11:118532229:C:A | F50L | 0.983 |
| 11:118532229:C:G | F50L | 0.983 |
| 11:118532233:T:A | C52S | 0.983 |
| 11:118532234:G:C | C52S | 0.983 |
| 11:118532398:T:C | C107R | 0.983 |
| 11:118532233:T:C | C52R | 0.982 |
| 11:118532393:T:C | L105P | 0.982 |
| 11:118532228:T:G | F50C | 0.981 |
| 11:118532461:T:C | F128L | 0.980 |
| 11:118532918:C:A | F128L | 0.980 |
| 11:118532918:C:G | F128L | 0.980 |
| 11:118532399:G:A | C107Y | 0.979 |
| 11:118532228:T:C | F50S | 0.978 |
| 11:118533029:G:C | W165C | 0.978 |
| 11:118533029:G:T | W165C | 0.978 |
| 11:118532235:C:G | C52W | 0.976 |
| 11:118532234:G:A | C52Y | 0.975 |
| 11:118532393:T:A | L105H | 0.975 |
| 11:118533503:A:C | S253R | 0.974 |
| 11:118533505:C:A | S253R | 0.974 |
dbSNP variants (sampled 300 via entrez): RS1000109082 (11:118533115 C>A,G,T), RS1000451566 (11:118538111 C>A), RS1001194423 (11:118543306 G>A,C), RS1001520528 (11:118531757 C>G,T), RS1001578541 (11:118544165 C>G), RS1002029390 (11:118543735 C>A,T), RS1002246734 (11:118532689 C>A,G), RS1002606265 (11:118534983 G>A,C), RS1002673144 (11:118541318 C>T), RS1002955641 (11:118529377 A>C), RS1003659377 (11:118545439 A>G), RS1003818835 (11:118539704 C>T), RS1004066696 (11:118533677 G>A), RS1004145949 (11:118538779 G>T), RS1004605552 (11:118543099 C>G,T)
Disease associations
OMIM: gene MIM:613934 | disease phenotypes: MIM:209850
GenCC curated gene-disease
Mondo (1): autism (MONDO:0005260)
Orphanet (0):
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000717 | Autism |
GWAS associations
0 associations (top):
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001321 | Autistic Disorder | F03.625.164.113.500 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
30 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, increases abundance, increases expression, affects cotreatment | 2 |
| Vehicle Emissions | decreases reaction, increases expression, decreases expression, increases abundance | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| Particulate Matter | decreases reaction, increases expression, decreases expression, increases abundance | 2 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| bisphenol A | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| 2-methyl-2H-pyrazole-3-carboxylic acid (2-methyl-4-o-tolylazophenyl)amide | decreases reaction, increases expression | 1 |
| MRK 003 | decreases expression | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Copper | decreases expression, affects binding | 1 |
| Doxorubicin | decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Manganese | decreases expression, increases abundance, affects cotreatment | 1 |
| Silicon Dioxide | decreases expression | 1 |
| T-2 Toxin | decreases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Valproic Acid | increases expression | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Antirheumatic Agents | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00211796 | PHASE4 | COMPLETED | Divalproex Sodium ER in Adult Autism |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT00409747 | PHASE4 | COMPLETED | Minocycline to Treat Childhood Regressive Autism |
| NCT00576732 | PHASE4 | COMPLETED | A Study of the Effectiveness and Safety of Two Doses of Risperidone in the Treatment of Children and Adolescents With Autistic Disorder |
| NCT00844753 | PHASE4 | COMPLETED | Atomoxetine, Placebo and Parent Management Training in Autism |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01098383 | PHASE4 | UNKNOWN | Treatment With Acetyl-Choline Esterase Inhibitors in Children With Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02069977 | PHASE4 | UNKNOWN | Study to Evaluate the Efficacy and Safety of Aripiprazole |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02199925 | PHASE4 | UNKNOWN | An Open-Label Study to Evaluate the Efficacy of High-Dose Gammaplex in Children on the Autism Spectrum |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02255565 | PHASE4 | COMPLETED | Dose Response Effects of Quillivant XR in Children With ADHD and Autism: A Pilot Study |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT00036231 | PHASE3 | TERMINATED | Synthetic Human Secretin in Children With Autism and Gastrointestinal Dysfunction |
| NCT00036244 | PHASE3 | COMPLETED | Synthetic Human Secretin in Children With Autism |
| NCT00065884 | PHASE3 | UNKNOWN | Valproate Response in Aggressive Autistic Adolescents |
| NCT00065962 | PHASE3 | COMPLETED | Secretin for the Treatment of Autism |
| NCT00252603 | PHASE3 | COMPLETED | Galantamine Versus Placebo in Childhood Autism |
| NCT00346736 | PHASE3 | COMPLETED | Use of Acupuncture In Children With Autistic Spectrum Disorder |
| NCT00352248 | PHASE3 | COMPLETED | Randomized Controlled Trial of Acupuncture Versus Sham Acupuncture in Autistic Spectrum Disorder |
| NCT00352352 | PHASE3 | COMPLETED | Use of Acupuncture In Children With Autistic Spectrum Disorder |
| NCT00355329 | PHASE3 | COMPLETED | Randomized Control Trial of Using Tongue Acupuncture in Autistic Spectrum Disorder Using PET Scan for Clinical Correlation |
| NCT00498173 | PHASE3 | COMPLETED | Effectiveness of Atomoxetine in Treating ADHD Symptoms in Children and Adolescents With Autism |
| NCT00541346 | PHASE3 | COMPLETED | A Pilot Study of Daytrana TM in Children With Autism Co-Morbid for Attention Deficit Hyperactivity Disorder (ADHD) Symptoms |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.