TMEM67
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Also known as MGC26979JBTS6NPHP11
Summary
TMEM67 (transmembrane protein 67, HGNC:28396) is a protein-coding gene on chromosome 8q22.1, encoding Meckelin (Q5HYA8). Required for ciliary structure and function.
The protein encoded by this gene localizes to the primary cilium and to the plasma membrane. The gene functions in centriole migration to the apical membrane and formation of the primary cilium. Multiple transcript variants encoding different isoforms have been found for this gene. Defects in this gene are a cause of Meckel syndrome type 3 (MKS3) and Joubert syndrome type 6 (JBTS6).
Source: NCBI Gene 91147 — RefSeq curated summary.
At a glance
- Gene–disease (curated): ciliopathy (Definitive, ClinGen) — +7 more curated relationships
- Clinical variants (ClinVar): 1,433 total — 117 pathogenic, 88 likely-pathogenic
- Phenotypes (HPO): 193
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_153704
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:28396 |
| Approved symbol | TMEM67 |
| Name | transmembrane protein 67 |
| Location | 8q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC26979, JBTS6, NPHP11 |
| Ensembl gene | ENSG00000164953 |
| Ensembl biotype | protein_coding |
| OMIM | 609884 |
| Entrez | 91147 |
Gene structure
Transcript identifiers
Ensembl transcripts: 47 — 19 nonsense_mediated_decay, 13 protein_coding, 12 retained_intron, 3 protein_coding_CDS_not_defined
ENST00000323130, ENST00000409623, ENST00000425545, ENST00000452276, ENST00000453321, ENST00000453906, ENST00000455946, ENST00000474944, ENST00000475305, ENST00000481620, ENST00000496213, ENST00000498673, ENST00000518319, ENST00000518896, ENST00000519845, ENST00000520680, ENST00000521065, ENST00000521222, ENST00000521517, ENST00000523230, ENST00000681998, ENST00000682036, ENST00000682577, ENST00000682624, ENST00000682700, ENST00000682744, ENST00000682804, ENST00000682837, ENST00000682935, ENST00000682984, ENST00000683078, ENST00000683223, ENST00000683238, ENST00000683249, ENST00000683336, ENST00000683362, ENST00000683850, ENST00000683919, ENST00000683953, ENST00000684023, ENST00000684064, ENST00000684089, ENST00000684149, ENST00000684343, ENST00000684416, ENST00000684540, ENST00000684733
RefSeq mRNA: 2 — MANE Select: NM_153704
NM_001142301, NM_153704
CCDS: CCDS6258
Canonical transcript exons
ENST00000453321 — 28 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001763018 | 93782395 | 93782460 |
| ENSE00001784886 | 93765572 | 93765646 |
| ENSE00002103295 | 93754894 | 93755137 |
| ENSE00002107836 | 93816372 | 93818121 |
| ENSE00003458598 | 93797331 | 93797470 |
| ENSE00003458645 | 93765406 | 93765475 |
| ENSE00003464763 | 93785222 | 93785378 |
| ENSE00003467504 | 93809057 | 93809161 |
| ENSE00003469218 | 93786223 | 93786346 |
| ENSE00003482226 | 93791263 | 93791319 |
| ENSE00003491083 | 93758483 | 93758576 |
| ENSE00003492818 | 93795409 | 93795507 |
| ENSE00003493852 | 93804762 | 93804878 |
| ENSE00003514419 | 93780874 | 93780982 |
| ENSE00003520135 | 93755778 | 93755866 |
| ENSE00003546583 | 93781658 | 93781744 |
| ENSE00003550082 | 93772589 | 93772651 |
| ENSE00003553174 | 93787844 | 93787949 |
| ENSE00003553915 | 93803604 | 93803684 |
| ENSE00003567278 | 93797134 | 93797233 |
| ENSE00003568312 | 93795901 | 93795987 |
| ENSE00003568652 | 93809785 | 93809887 |
| ENSE00003623622 | 93799618 | 93799758 |
| ENSE00003627194 | 93763842 | 93763941 |
| ENSE00003630971 | 93793198 | 93793296 |
| ENSE00003634826 | 93780593 | 93780747 |
| ENSE00003642495 | 93808840 | 93808956 |
| ENSE00003685905 | 93815305 | 93815447 |
Expression profiles
Bgee: expression breadth ubiquitous, 203 present calls, max score 97.85.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.4226 / max 80.7828, expressed in 1635 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 89757 | 7.0238 | 1622 |
| 89756 | 0.3646 | 172 |
| 89758 | 0.0342 | 8 |
Top tissues by expression
244 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 97.85 | gold quality |
| right uterine tube | UBERON:0001302 | 94.98 | gold quality |
| calcaneal tendon | UBERON:0003701 | 92.20 | gold quality |
| bronchial epithelial cell | CL:0002328 | 90.96 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 90.40 | gold quality |
| ventricular zone | UBERON:0003053 | 89.84 | gold quality |
| bronchus | UBERON:0002185 | 89.55 | gold quality |
| heart left ventricle | UBERON:0002084 | 87.58 | gold quality |
| tendon | UBERON:0000043 | 87.38 | gold quality |
| adenohypophysis | UBERON:0002196 | 87.38 | gold quality |
| adrenal tissue | UBERON:0018303 | 87.35 | gold quality |
| oviduct epithelium | UBERON:0004804 | 87.29 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 87.14 | gold quality |
| cardiac ventricle | UBERON:0002082 | 86.91 | gold quality |
| left testis | UBERON:0004533 | 86.87 | gold quality |
| right testis | UBERON:0004534 | 86.68 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 86.34 | gold quality |
| pituitary gland | UBERON:0000007 | 86.04 | gold quality |
| sperm | CL:0000019 | 85.95 | gold quality |
| right atrium auricular region | UBERON:0006631 | 85.88 | gold quality |
| apex of heart | UBERON:0002098 | 85.80 | gold quality |
| testis | UBERON:0000473 | 85.71 | gold quality |
| heart | UBERON:0000948 | 85.53 | gold quality |
| fallopian tube | UBERON:0003889 | 85.51 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 85.28 | gold quality |
| thyroid gland | UBERON:0002046 | 85.11 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 84.82 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.70 | gold quality |
| cardiac atrium | UBERON:0002081 | 84.70 | gold quality |
| left ovary | UBERON:0002119 | 84.01 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-114 | yes | 11.08 |
| E-ANND-3 | yes | 10.21 |
| E-GEOD-124858 | no | 153.61 |
| E-MTAB-7381 | no | 144.20 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
94 targeting TMEM67, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-485-3P | 99.98 | 70.68 | 1585 |
| HSA-MIR-539-3P | 99.98 | 70.74 | 1616 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-568 | 99.98 | 69.86 | 2084 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-144-3P | 99.94 | 73.98 | 2698 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-4778-3P | 99.93 | 70.40 | 1818 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 25)
- mapping to chromosome 8 and possible role in Meckel-Gruber syndrome (PMID:12384791)
- Positional cloning of the Wpk gene suggested a MKS3 candidate gene, TMEM67, for which we identified pathogenic mutations for five MKS3-linked consanguineous families. (PMID:16415887)
- identified MKS3 mutations in four patients with JS, thus defining MKS3 as the sixth JS locus (JBTS6) (PMID:17160906)
- The Meckel-Gruber Syndrome proteins MKS1 and meckelin interact and are required for primary cilium formation. (PMID:17185389)
- Study concluded that MKS1 and MKS3 account for the majority of Meckel-Gruber syndrome; polydactyly is usually found in MKS1 but rare in MKS3; cases with no, or milder, CNS phenotypes were only found in MKS3. (PMID:17377820)
- genotyping of MKS1 & MKS3 genes in a large, multiethnic cohort of 120 independent cases of Meckel syndrome; first results indicate that the MKS1 & MKS3 genes are each responsible for about 7% of MKS cases with various mutations in different populations (PMID:17397051)
- Mutations in MKS3 is associated with Bardet-Biedl syndrome (PMID:18327255)
- Analysis of MKS3 in 14 COACH families identified mutations in 8 (57%). (PMID:19058225)
- Missense mutations within the MKS3 gene are associated with nephronophthisis with liver fibrosis. (PMID:19508969)
- Kidney tissue and cells from MKS1 and MKS3 patients showed defects in centrosome and cilia number, including multi-ciliated respiratory-like epithelia, and longer cilia. (PMID:19515853)
- Mutations in MKS3 are responsible for the majority of COACH syndrome, with minor contributions from CC2D2A and RPGRIP1L. (PMID:19574260)
- Data show that knockdown of MKS3 inhibited degradation of mutant SP-C. (PMID:19815549)
- mutation analysis of TMEM67 in Joubert syndrome and related disorders cases and Meckel syndrome fetuses; identification of 20 novel mutations; review of published mutations and discussion of genotype-phenotype correlates (PMID:20232449)
- The Meckel syndrome protein meckelin (TMEM67) is a key regulator of cilia function but is not required for tissue planar polarity. (PMID:23393159)
- Importantly, one Japanese and one Omani families carried compound biallelic mutations in two distinct genes (TMEM67/RPGRIP1L and TMEM138/BBS1, respectively). (PMID:27434533)
- Low expression of TMEM67 is associated with lymph node metastasis in urothelial carcinoma of the bladder. (PMID:28161324)
- The authors results suggest that Asn242Ser in TMEM67 is a founder mutation in the Iranian population, which might explain a significant proportion of JS cases from eastern Iran. (PMID:28719906)
- Study identified two novel heterozygous mutations (p.Gly132Ala and p.Tyr920ThrfsX40) in the TMEM67 gene in a patient with COACH syndrome. Co-injection into zebrafish embryos of tmem67 morpholinos and RNAs encoding the two mutations show no rescue of the hydrocephalus phenotype. These findings indicate that the two mutations may cause COACH syndrome via altered Wnt signaling, at least in part. (PMID:28860541)
- Kidney disease occurs in up to one third of patients with Joubert syndrome, most commonly in those with mutations in CEP290, TMEM67, and AHI1. (PMID:29146704)
- Compound heterozygous mutations in TMEM67 cause RHYNS syndrome ranging from early lethality to adults with liver fibrosis. (PMID:29891882)
- This study confirms the diagnosis of Joubert syndrome in a Vietnamese family and expands the mutational spectrum of TMEM67 sequence variations. (PMID:32000717)
- TACC3 promotes prostate cancer cell proliferation and restrains primary cilium formation. (PMID:32156598)
- Association of novel TMEM67 variants with mild phenotypes of high gamma-glutamyl transpeptidase cholestasis and congenital hepatic fibrosis. (PMID:35621037)
- TMEM67 is required for the gating function of the transition zone that controls entry of membrane-associated proteins ARL13B and INPP5E into primary cilia. (PMID:36334440)
- Two novel TMEM67 variations in a Chinese family with recurrent pregnancy loss: a case report. (PMID:38844949)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tmem67 | ENSDARG00000076752 |
| mus_musculus | Tmem67 | ENSMUSG00000049488 |
| rattus_norvegicus | Tmem67 | ENSRNOG00000016187 |
| drosophila_melanogaster | CG15923 | FBGN0038814 |
| caenorhabditis_elegans | WBGENE00018042 |
Protein
Protein identifiers
Meckelin — Q5HYA8 (reviewed: Q5HYA8)
Alternative names: Meckel syndrome type 3 protein, Transmembrane protein 67
All UniProt accessions (20): A0A0C4DFP8, A0A7P0MXI9, A0A804HHW8, A0A804HIB2, A0A804HJR8, Q5HYA8, A0A804HJS5, A0A804HJX6, A0A804HKM4, A0A804HKM9, A0A804HL43, A0A804HLK0, C9JHI2, C9JRQ8, E5RG10, E5RH38, F8WCQ6, H0YAR5, H0YB69, H0YC18
UniProt curated annotations — full annotation on UniProt →
Function. Required for ciliary structure and function. Part of the tectonic-like complex which is required for tissue-specific ciliogenesis and may regulate ciliary membrane composition. Involved in centrosome migration to the apical cell surface during early ciliogenesis. Involved in the regulation of cilia length and appropriate number through the control of centrosome duplication. Is a key regulator of stereociliary bundle orientation. Required for epithelial cell branching morphology. Essential for endoplasmic reticulum-associated degradation (ERAD) of surfactant protein C (SFTPC). Involved in the negative regulation of canonical Wnt signaling, and activation of the non-canonical cascade stimulated by WNT5A. In non-canonical Wnt signaling, it may act as ROR2 coreceptor.
Subunit / interactions. Homodimer. Part of the tectonic-like complex (also named B9 complex). Interacts with DNAJB9, DNAJC10 and mutated SFTPC. Interacts with SYNE2 during the early establishment of cell polarity. Interacts (via C-terminus) with FLNA. Interacts with TMEM218. Interacts with WNT5A. Interacts with ROR2.
Subcellular location. Cell membrane. Endoplasmic reticulum membrane. Cell projection. Cilium. Cytoplasm. Cytoskeleton. Cilium basal body.
Tissue specificity. Widely expressed in adult and fetal tissues. Expressed at higher level in spinal cord.
Disease relevance. TMEM67 mutations result in ciliary dysfunction leading to a broad spectrum of disorders, collectively termed ciliopathies. Overlapping clinical features include retinal degeneration, renal cystic disease, skeletal abnormalities, fibrosis of various organ, and a complex range of anatomical and functional defects of the central and peripheral nervous system. The ciliopathy range of diseases includes Meckel-Gruber syndrome, Bardet-Biedl syndrome, Joubert syndrome, and nephronophtisis among others. Single-locus allelism is insufficient to explain the variable penetrance and expressivity of such disorders, leading to the suggestion that variations across multiple sites of the ciliary proteome influence the clinical outcome. Meckel syndrome 3 (MKS3) [MIM:607361] A disorder characterized by a combination of renal cysts and variably associated features including developmental anomalies of the central nervous system (typically encephalocele), hepatic ductal dysplasia and cysts, and polydactyly. The disease is caused by variants affecting the gene represented in this entry. Joubert syndrome 6 (JBTS6) [MIM:610688] A disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy and renal disease. The disease is caused by variants affecting the gene represented in this entry. Bardet-Biedl syndrome 14 (BBS14) [MIM:615991] A syndrome characterized by usually severe pigmentary retinopathy, early-onset obesity, polydactyly, hypogenitalism, renal malformation and intellectual disability. Secondary features include diabetes mellitus, hypertension and congenital heart disease. Bardet-Biedl syndrome inheritance is autosomal recessive, but three mutated alleles (two at one locus, and a third at a second locus) may be required for clinical manifestation of some forms of the disease. The gene represented in this entry may act as a disease modifier. TMEM67 variations may influence the expression of Bardet-Biedl syndrome in patients who have causative mutations in other genes. Heterozygosity for a complex mutation in the TMEM67 gene coding for a protein with 2 in cis changes, and homozygosity for a truncating mutation of the CEP290 gene has been found in a patient with Bardet-Biedl syndrome 14. COACH syndrome 1 (COACH1) [MIM:216360] A form of COACH syndrome, a disorder characterized by cerebellar vermis hypoplasia, developmental delay, impaired intellectual development, ataxia, and hepatic fibrosis. Patients present the molar tooth sign, a midbrain-hindbrain malformation pathognomonic for Joubert syndrome and related disorders. Other features, such as coloboma and renal cysts, may be variable. COACH1 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Nephronophthisis 11 (NPHP11) [MIM:613550] A disorder characterized by the association of nephronophthisis with hepatic fibrosis. Nephronophthisis is a progressive tubulo-interstitial kidney disorder histologically characterized by modifications of the tubules with thickening of the basement membrane, interstitial fibrosis and, in the advanced stages, medullary cysts. Typical clinical features are chronic renal failure, anemia, polyuria, polydipsia, isosthenuria, and growth retardation. Associations with extrarenal symptoms, especially ocular lesions, are frequent. The disease is caused by variants affecting the gene represented in this entry. RHYNS syndrome (RHYNS) [MIM:602152] An autosomal recessive syndrome characterized by gaze palsy, retinitis pigmentosa, sensorineural hearing loss, hypopituitarism, nephronophthisis, and skeletal dysplasia. The disease is caused by variants affecting the gene represented in this entry.
RefSeq proteins (2): NP_001135773, NP_714915* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR009030 | Growth_fac_rcpt_cys_sf | Homologous_superfamily |
| IPR019170 | Meckelin | Family |
Pfam: PF09773
UniProt features (181 total): sequence variant 58, strand 44, helix 24, disulfide bond 12, intramembrane region 9, topological domain 8, transmembrane region 7, turn 5, mutagenesis site 4, glycosylation site 4, sequence conflict 2, signal peptide 1, chain 1, region of interest 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7FH1 | ELECTRON MICROSCOPY | 3.34 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q5HYA8-F1 | 85.20 | 0.47 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (12): 49–62, 65–78, 80–97, 100–114, 117–127, 129–150, 153–170, 173–184, 186–197, 237–246, 253–268, 357–378
Glycosylation sites (4): 141, 179, 242, 318
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 170 | decreased function in non-canonical wnt signaling activation. when expressed in tmem67-null cells does not induce ror2 p |
| 176 | does not affect function in non-canonical wnt signaling activation. when expressed in tmem67-null cells it induces ror2 |
| 790 | decreased function in non-canonical wnt signaling activation. when expressed in tmem67-null cells does not induce ror2 p |
| 979 | does not affect function in non-canonical wnt signaling activation. when expressed in tmem67-null cells it induces ror2 |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-5620912 | Anchoring of the basal body to the plasma membrane |
| R-HSA-1852241 | Organelle biogenesis and maintenance |
| R-HSA-5617833 | Cilium Assembly |
MSigDB gene sets: 504 (showing top):
GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GOBP_PROTEIN_LOCALIZATION_TO_CILIUM, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, GOBP_NON_CANONICAL_WNT_SIGNALING_PATHWAY, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE_PROCESS, GOBP_NEGATIVE_REGULATION_OF_CELL_CYCLE, GOBP_CILIUM_ORGANIZATION, GOBP_REGULATION_OF_CELL_CYCLE, GOCC_CENTROSOME, GOBP_REGULATION_OF_CENTROSOME_CYCLE, GOBP_ORGANELLE_ASSEMBLY
GO Biological Process (5): negative regulation of centrosome duplication (GO:0010826), non-canonical Wnt signaling pathway (GO:0035567), ERAD pathway (GO:0036503), cilium assembly (GO:0060271), cell projection organization (GO:0030030)
GO Molecular Function (3): filamin binding (GO:0031005), obsolete unfolded protein binding (GO:0051082), protein binding (GO:0005515)
GO Cellular Component (13): endoplasmic reticulum membrane (GO:0005789), centrosome (GO:0005813), cytoplasmic vesicle membrane (GO:0030659), ciliary transition zone (GO:0035869), MKS complex (GO:0036038), ciliary membrane (GO:0060170), cytoplasm (GO:0005737), endoplasmic reticulum (GO:0005783), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), cilium (GO:0005929), membrane (GO:0016020), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Assembly of the 9+0 primary cilium | 1 |
| Organelle biogenesis and maintenance | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cilium | 2 |
| regulation of centrosome duplication | 1 |
| negative regulation of centrosome cycle | 1 |
| centrosome duplication | 1 |
| Wnt signaling pathway | 1 |
| proteasomal protein catabolic process | 1 |
| response to endoplasmic reticulum stress | 1 |
| response to chemical | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| cellular component organization | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| organelle membrane | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| centriole | 1 |
| microtubule organizing center | 1 |
| vesicle membrane | 1 |
| cytoplasmic vesicle | 1 |
| protein-containing complex | 1 |
| ciliary transition zone | 1 |
| cell projection membrane | 1 |
| bounding membrane of organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
924 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TMEM67 | TMEM216 | Q9P0N5 | 994 |
| TMEM67 | NPHP1 | O15259 | 992 |
| TMEM67 | CEP290 | O15078 | 991 |
| TMEM67 | CC2D2A | Q9P2K1 | 990 |
| TMEM67 | B9D1 | Q9UPM9 | 987 |
| TMEM67 | MKS1 | Q9NXB0 | 987 |
| TMEM67 | B9D2 | Q9BPU9 | 975 |
| TMEM67 | TMEM231 | Q9H6L2 | 973 |
| TMEM67 | RPGRIP1L | Q68CZ1 | 970 |
| TMEM67 | TCTN2 | Q96GX1 | 968 |
| TMEM67 | TCTN1 | Q2MV58 | 968 |
| TMEM67 | AHI1 | Q8N157 | 967 |
| TMEM67 | NPHP4 | O75161 | 967 |
| TMEM67 | TMEM237 | Q96Q45 | 939 |
| TMEM67 | TCTN3 | Q6NUS6 | 925 |
IntAct
105 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CD27 | TCAF2 | psi-mi:“MI:0914”(association) | 0.640 |
| TMEM67 | APP | psi-mi:“MI:0915”(physical association) | 0.560 |
| SCGB1D1 | FAM234B | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM30B | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| SPINK4 | PLXNA2 | psi-mi:“MI:0914”(association) | 0.530 |
| DEFA1 | MANBA | psi-mi:“MI:0914”(association) | 0.530 |
| TAFA4 | NRP1 | psi-mi:“MI:0914”(association) | 0.530 |
| CD1E | SUSD5 | psi-mi:“MI:0914”(association) | 0.530 |
| TCTN2 | TPST2 | psi-mi:“MI:0914”(association) | 0.530 |
| ADAM33 | LRP5 | psi-mi:“MI:0914”(association) | 0.530 |
| SCGB1D4 | EGFR | psi-mi:“MI:0914”(association) | 0.530 |
| DEFB121 | COL6A2 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC22A9 | GPR89A | psi-mi:“MI:0914”(association) | 0.530 |
| CLGN | NPC1 | psi-mi:“MI:0914”(association) | 0.530 |
| NRN1 | SLC1A1 | psi-mi:“MI:0914”(association) | 0.530 |
| CD70 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| TMPRSS11B | psi-mi:“MI:0914”(association) | 0.350 | |
| TMEM30A | UPK3BL1 | psi-mi:“MI:0914”(association) | 0.350 |
| LYPD3 | CLASP2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC22A9 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| PTPRK | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (165): TMEM67 (Affinity Capture-MS), TMEM67 (Affinity Capture-MS), TMEM67 (Affinity Capture-MS), TMEM67 (Affinity Capture-MS), ABCD3 (Proximity Label-MS), AKAP1 (Proximity Label-MS), ATP6AP1 (Proximity Label-MS), ATP6AP2 (Proximity Label-MS), ATP6V0A1 (Proximity Label-MS), CAMLG (Proximity Label-MS), CCDC47 (Proximity Label-MS), CKAP4 (Proximity Label-MS), DDX54 (Proximity Label-MS), ERLIN2 (Proximity Label-MS), HM13 (Proximity Label-MS)
ESM2 similar proteins: A5PJN2, B1H1F9, B4URD6, B6CVD7, O18823, O43556, O43909, O56140, O70258, P0C152, P28039, P97259, Q01H84, Q08834, Q09328, Q28F39, Q29S03, Q2F4V2, Q4R5B1, Q5HYA8, Q5RAP2, Q6AXF6, Q6DD71, Q6DPZ9, Q6DQ19, Q6DQ21, Q6J8E7, Q6YAT4, Q7SEY9, Q7T3D1, Q7X9I4, Q7YTU4, Q86YB8, Q8BR76, Q8IZ81, Q8NBP0, Q8QPL1, Q8R180, Q8R2E9, Q8R3N6
Diamond homologs: P0C152, Q5HYA8, Q8BR76
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 136 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Antigen Presentation: Folding, assembly and peptide loading of class I MHC | 6 | 27.5× | 3e-05 |
| Beta defensins | 6 | 19.0× | 1e-04 |
| Defensins | 6 | 16.6× | 2e-04 |
| Interferon gamma signaling | 7 | 10.2× | 5e-04 |
| Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | 8 | 8.1× | 5e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| peptide antigen assembly with MHC class II protein complex | 5 | 45.0× | 3e-05 |
| positive regulation of T cell mediated cytotoxicity | 8 | 34.9× | 5e-08 |
| antigen processing and presentation of exogenous peptide antigen via MHC class II | 5 | 23.2× | 4e-04 |
| positive regulation of immune response | 5 | 20.6× | 5e-04 |
| positive regulation of T cell activation | 5 | 18.9× | 7e-04 |
| defense response to Gram-negative bacterium | 6 | 8.6× | 3e-03 |
| adaptive immune response | 9 | 6.5× | 1e-03 |
| immune response | 11 | 4.4× | 3e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
1433 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 117 |
| Likely pathogenic | 88 |
| Uncertain significance | 497 |
| Likely benign | 515 |
| Benign | 52 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1065634 | NM_153704.6(TMEM67):c.230C>A (p.Ser77Ter) | Pathogenic |
| 1073371 | NM_153704.6(TMEM67):c.2087T>C (p.Leu696Pro) | Pathogenic |
| 1252092 | NM_153704.6(TMEM67):c.2306del (p.Leu769fs) | Pathogenic |
| 1252093 | NM_153704.6(TMEM67):c.2439G>A (p.Ala813=) | Pathogenic |
| 1252094 | NM_153704.6(TMEM67):c.2326T>A (p.Ser776Thr) | Pathogenic |
| 1319812 | NM_153704.6(TMEM67):c.1960+2T>C | Pathogenic |
| 1323695 | NM_153704.6(TMEM67):c.1289-2del | Pathogenic |
| 1352682 | NM_153704.6(TMEM67):c.714G>A (p.Trp238Ter) | Pathogenic |
| 1368 | NM_153704.6(TMEM67):c.2315_2322+4delinsG | Pathogenic |
| 1369 | NM_153704.6(TMEM67):c.1127A>C (p.Gln376Pro) | Pathogenic |
| 1372 | NM_153704.6(TMEM67):c.2439+5G>C | Pathogenic |
| 1374490 | NM_153704.6(TMEM67):c.459T>A (p.Cys153Ter) | Pathogenic |
| 1375 | NM_153704.6(TMEM67):c.1961-2A>C | Pathogenic |
| 1376 | NM_153704.6(TMEM67):c.622A>T (p.Arg208Ter) | Pathogenic |
| 1377709 | NM_153704.6(TMEM67):c.683_689del (p.Lys228fs) | Pathogenic |
| 1379 | NM_153704.6(TMEM67):c.2556+1G>T | Pathogenic |
| 1380 | NM_153704.6(TMEM67):c.312+5G>A | Pathogenic |
| 1382 | NM_153704.6(TMEM67):c.2461G>A (p.Gly821Ser) | Pathogenic |
| 1384 | NM_153704.6(TMEM67):c.869G>T (p.Trp290Leu) | Pathogenic |
| 1385 | NM_153704.6(TMEM67):c.2461G>C (p.Gly821Arg) | Pathogenic |
| 1386 | NM_153704.6(TMEM67):c.130C>T (p.Gln44Ter) | Pathogenic |
| 1390145 | NM_153704.6(TMEM67):c.1638del (p.Gly545_Trp546insTer) | Pathogenic |
| 1394423 | NM_153704.6(TMEM67):c.312+2T>G | Pathogenic |
| 1411457 | NM_153704.6(TMEM67):c.1387C>T (p.Arg463Ter) | Pathogenic |
| 1433508 | NM_153704.6(TMEM67):c.924_925insTGAGGAGTGTCTCTGCCCGGCCGCTCCGTCTGAGAAGTGAGGAAACCCTCTGCCTGGCAACCGCCCCGTCTGAGAAGTGAGGAGCCCCTCCGTNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAGGATTAGCACCTCAA (p.Val309Ter) | Pathogenic |
| 1453206 | NM_153704.6(TMEM67):c.1638G>A (p.Trp546Ter) | Pathogenic |
| 1454299 | NM_153704.6(TMEM67):c.1927C>T (p.Arg643Ter) | Pathogenic |
| 1454745 | NM_153704.6(TMEM67):c.996_1014del (p.Phe332fs) | Pathogenic |
| 1456259 | NC_000008.10:g.(?94821048)(94822135_?)del | Pathogenic |
| 1458833 | NM_153704.6(TMEM67):c.2345A>G (p.His782Arg) | Pathogenic |
SpliceAI
4566 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:93755135:GAG:G | donor_gain | 1.0000 |
| 8:93755138:G:GG | donor_gain | 1.0000 |
| 8:93755138:GTAAG:G | donor_loss | 1.0000 |
| 8:93755906:GTA:G | donor_gain | 1.0000 |
| 8:93763831:A:AG | acceptor_gain | 1.0000 |
| 8:93763832:A:G | acceptor_gain | 1.0000 |
| 8:93765476:G:GG | donor_gain | 1.0000 |
| 8:93772583:TTACA:T | acceptor_loss | 1.0000 |
| 8:93772584:TACA:T | acceptor_loss | 1.0000 |
| 8:93772586:CA:C | acceptor_loss | 1.0000 |
| 8:93772587:A:AG | acceptor_gain | 1.0000 |
| 8:93772587:A:C | acceptor_loss | 1.0000 |
| 8:93772587:AG:A | acceptor_gain | 1.0000 |
| 8:93772587:AGG:A | acceptor_gain | 1.0000 |
| 8:93772588:G:GA | acceptor_gain | 1.0000 |
| 8:93772588:GG:G | acceptor_gain | 1.0000 |
| 8:93772588:GGG:G | acceptor_gain | 1.0000 |
| 8:93772588:GGGC:G | acceptor_gain | 1.0000 |
| 8:93772588:GGGCA:G | acceptor_gain | 1.0000 |
| 8:93772647:GTTGG:G | donor_gain | 1.0000 |
| 8:93772648:TTGG:T | donor_gain | 1.0000 |
| 8:93772648:TTGGG:T | donor_loss | 1.0000 |
| 8:93772650:GG:G | donor_gain | 1.0000 |
| 8:93772651:GG:G | donor_gain | 1.0000 |
| 8:93772651:GGT:G | donor_loss | 1.0000 |
| 8:93772652:G:GC | donor_loss | 1.0000 |
| 8:93772652:G:GG | donor_gain | 1.0000 |
| 8:93772653:TAAG:T | donor_loss | 1.0000 |
| 8:93781652:A:AG | acceptor_gain | 1.0000 |
| 8:93781653:A:G | acceptor_gain | 1.0000 |
AlphaMissense
6566 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:93797376:G:C | R669T | 0.999 |
| 8:93797399:T:A | W677R | 0.999 |
| 8:93797399:T:C | W677R | 0.999 |
| 8:93797366:A:C | S666R | 0.998 |
| 8:93797368:C:A | S666R | 0.998 |
| 8:93797368:C:G | S666R | 0.998 |
| 8:93797372:T:A | W668R | 0.998 |
| 8:93797372:T:C | W668R | 0.998 |
| 8:93797376:G:T | R669I | 0.998 |
| 8:93797377:A:C | R669S | 0.998 |
| 8:93797377:A:T | R669S | 0.998 |
| 8:93804765:T:C | S776P | 0.998 |
| 8:93804796:G:A | G786E | 0.998 |
| 8:93804811:G:A | G791D | 0.998 |
| 8:93797194:T:A | W641R | 0.997 |
| 8:93797194:T:C | W641R | 0.997 |
| 8:93797390:G:C | A674P | 0.997 |
| 8:93803672:C:G | C770W | 0.997 |
| 8:93803679:A:C | S773R | 0.997 |
| 8:93803681:T:A | S773R | 0.997 |
| 8:93803681:T:G | S773R | 0.997 |
| 8:93809872:A:C | S917R | 0.997 |
| 8:93809874:C:A | S917R | 0.997 |
| 8:93809874:C:G | S917R | 0.997 |
| 8:93797196:G:C | W641C | 0.996 |
| 8:93797196:G:T | W641C | 0.996 |
| 8:93803670:T:C | C770R | 0.996 |
| 8:93804865:T:C | L809P | 0.996 |
| 8:93797191:G:C | D640H | 0.995 |
| 8:93804795:G:A | G786R | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000122389 (8:93784339 C>T), RS1000224211 (8:93826376 G>A,T), RS1000261528 (8:93790499 C>T), RS1000262173 (8:93784532 T>C), RS1000280591 (8:93778027 C>A,G,T), RS1000364618 (8:93754576 G>C), RS1000399542 (8:93773359 G>T), RS1000408789 (8:93830037 A>G), RS1000430654 (8:93773143 A>C), RS1000470544 (8:93826552 G>A,C), RS1000470934 (8:93756947 G>A), RS1000553877 (8:93811598 A>G), RS1000581019 (8:93802581 T>G), RS1000609951 (8:93778223 C>T), RS1000649347 (8:93804374 G>A,T)
Disease associations
OMIM: gene MIM:609884 | disease phenotypes: MIM:602152, MIM:607361, MIM:610688, MIM:613550, MIM:615991, MIM:213300, MIM:249000, MIM:216360, MIM:108600, MIM:256100, MIM:209900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| COACH syndrome 1 | Definitive | Autosomal recessive |
| Meckel syndrome, type 3 | Definitive | Autosomal recessive |
| nephronophthisis 11 | Definitive | Autosomal recessive |
| Joubert syndrome 6 | Strong | Autosomal recessive |
| ciliopathy | Strong | Autosomal recessive |
| Joubert syndrome | Supportive | Autosomal recessive |
| Meckel syndrome | Supportive | Autosomal recessive |
| Senior-Boichis syndrome | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| ciliopathy | Definitive | AR |
Mondo (29): RHYNS syndrome (MONDO:0011202), Meckel syndrome, type 3 (MONDO:0011821), Joubert syndrome 6 (MONDO:0012539), nephronophthisis 11 (MONDO:0013302), Bardet-Biedl syndrome 14 (MONDO:0014442), Joubert syndrome (MONDO:0018772), Meckel syndrome (MONDO:0018921), COACH syndrome 1 (MONDO:0800103), spastic ataxia (MONDO:0017845), Joubert syndrome and related disorders (MONDO:0015369), kidney disorder (MONDO:0005240), nephronophthisis (MONDO:0019005), coloboma (MONDO:0001476), cystic kidney disease (MONDO:0002473), pathologic nystagmus (MONDO:0004843)
Orphanet (15): Bardet-Biedl syndrome (Orphanet:110), RHYNS syndrome (Orphanet:140976), Joubert syndrome with hepatic defect (Orphanet:1454), Isolated Joubert syndrome (Orphanet:475), Meckel syndrome (Orphanet:564), Senior-Boichis syndrome (Orphanet:84081), Spastic ataxia (Orphanet:316226), Joubert syndrome and related disorders (Orphanet:140874), Nephronophthisis (Orphanet:655), Cerebellar malformation (Orphanet:182061), OBSOLETE: Ocular coloboma (Orphanet:194), Atypical hemolytic uremic syndrome (Orphanet:2134), Ciliopathy (Orphanet:363250), Coloboma of iris (Orphanet:98944), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
193 total (30 of 193 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000002 | Abnormality of body height |
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000037 | Male pseudohermaphroditism |
| HP:0000062 | Ambiguous genitalia |
| HP:0000068 | Urethral atresia |
| HP:0000073 | Ureteral duplication |
| HP:0000083 | Renal insufficiency |
| HP:0000089 | Renal hypoplasia |
| HP:0000090 | Nephronophthisis |
| HP:0000092 | Renal tubular atrophy |
| HP:0000103 | Polyuria |
| HP:0000107 | Renal cyst |
| HP:0000108 | Renal corticomedullary cysts |
| HP:0000112 | Nephropathy |
| HP:0000122 | Unilateral renal agenesis |
| HP:0000154 | Wide mouth |
| HP:0000175 | Cleft palate |
| HP:0000202 | Orofacial cleft |
| HP:0000221 | Furrowed tongue |
| HP:0000238 | Hydrocephalus |
| HP:0000252 | Microcephaly |
| HP:0000256 | Macrocephaly |
| HP:0000276 | Long face |
| HP:0000293 | Full cheeks |
| HP:0000311 | Round face |
| HP:0000316 | Hypertelorism |
| HP:0000340 | Sloping forehead |
GWAS associations
0 associations (top):
MeSH disease descriptors (17)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065766 | Atypical Hemolytic Uremic Syndrome | C12.050.351.968.419.936.463.500; C12.200.777.419.936.463.500; C12.950.419.936.463.500; C15.378.050.141.610.500; C15.378.140.855.925.500.500; C15.378.243.937.925.500.500 |
| D020788 | Bardet-Biedl Syndrome | C10.228.140.617.200; C11.270.684.624; C16.131.077.245.125; C16.320.184.125 |
| D003103 | Coloboma | C11.250.110; C11.270.147; C16.131.384.282 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D007674 | Kidney Diseases | C12.050.351.968.419; C12.200.777.419; C12.950.419 |
| D052177 | Kidney Diseases, Cystic | C12.050.351.968.419.403; C12.200.777.419.403; C12.950.419.403 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| D016104 | Oligohydramnios | C12.050.703.560 |
| D010195 | Pancreatitis | C06.689.750 |
| D010538 | Peritonitis | C01.463.600; C06.844.640 |
| D051437 | Renal Insufficiency | C12.050.351.968.419.780; C12.200.777.419.780; C12.950.419.780 |
| C567141 | Bardet-Biedl Syndrome 14 (supp.) | |
| C537689 | Joubert syndrome 6 (supp.) | |
| C536132 | Meckel syndrome type 3 (supp.) | |
| C537612 | RHYNS syndrome (supp.) | |
| C564815 | Spastic Ataxia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases expression, increases methylation | 1 |
| tris(2-butoxyethyl) phosphate | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| zinc chromate | decreases expression, increases abundance | 1 |
| ochratoxin A | decreases acetylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| avobenzone | decreases expression | 1 |
| chromium hexavalent ion | decreases expression, increases abundance | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| ICG 001 | decreases expression | 1 |
| eprenetapopt | affects expression, affects reaction | 1 |
| Sunitinib | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Quercetin | decreases expression | 1 |
| Smoke | increases abundance, increases expression | 1 |
| Thiram | decreases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Aflatoxin M1 | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C7LK | GM27987 | Finite cell line | Male |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00067990 | PHASE4 | COMPLETED | Angiotensin II Blockade for Chronic Allograft Nephropathy |
| NCT00117078 | PHASE4 | COMPLETED | Aranesp® Monthly Preference Study - 2 |
| NCT00117130 | PHASE4 | COMPLETED | Study to Evaluate Effectiveness of Aranesp® |
| NCT00132431 | PHASE4 | COMPLETED | START: Sensipar Treatment Algorithm to Reach K/DOQI Targets in Chronic Kidney Disease Subjects With Secondary Hyperparathyroidism |
| NCT00140985 | PHASE4 | COMPLETED | Antiproteinuric Efficacy of Losartan Potassium in Patients With Non-Diabetic Proteinuric Renal Diseases (0954-213) |
| NCT00246129 | PHASE4 | COMPLETED | CamTac Trial:Campath-Tacrolimus vs IL2R MoAb/Tacrolimus/MMF in Renal Transplantation |
| NCT00275535 | PHASE4 | COMPLETED | The Comparison of Tacrolimus and Sirolimus Immunosuppression Based Drug Regimens in Kidney Transplant Recipients |
| NCT00282217 | PHASE4 | COMPLETED | Study Evaluating Sirolimus in the Treatment of Kidney Transplant |
| NCT00289614 | PHASE4 | COMPLETED | Patients With Renal Impairment and Diabetes Undergoing Computed Tomography (CT) |
| NCT00290069 | PHASE4 | UNKNOWN | Renal Function Optimization With Mycophenolate Mofetil (MMF) Immunosuppressor Regimes (ALHAMBRA) |
| NCT00338468 | PHASE4 | TERMINATED | A Study to Assess Disability in Anemic Elderly Patients With Kidney Disease Receiving PROCRIT (Epoetin Alfa) |
| NCT00368901 | PHASE4 | COMPLETED | STAAR-2 Clinical Study |
| NCT00369733 | PHASE4 | COMPLETED | STAAR-3 Clinical Study |
| NCT00369772 | PHASE4 | COMPLETED | STAAR-1 Clinical Study |
| NCT00379899 | PHASE4 | COMPLETED | ADVANCE: Study to Evaluate Cinacalcet Plus Low Dose Vitamin D on Vascular Calcification in Subjects With Chronic Kidney Disease Receiving Hemodialysis |
| NCT00443508 | PHASE4 | UNKNOWN | Reduction or Discontinuation of CNI’s With Conversion to Everolimus-Based Immunosuppresion |
| NCT00452478 | PHASE4 | TERMINATED | Conversion From Standard Phosphate Binder Therapy to Fosrenol® (Lanthanum Carbonate) in Chronic Kidney Disease Stage 5 |
| NCT00492518 | PHASE4 | COMPLETED | Acetylcysteine, Theophylline, and a Combination of Both in the Prophylaxis of Contrast-Induced Nephropathy |
| NCT00505102 | PHASE4 | UNKNOWN | Safe Renal Function In Long Term Heart Transplanted Patients |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00688480 | PHASE4 | COMPLETED | Do Xanthine Oxidase Inhibitors Reduce Both Left Ventricular Hypertrophy and Endothelial Dysfunction in Cardiovascular Patients With Renal Dysfunction? |
| NCT00863707 | PHASE4 | COMPLETED | A Study of the Safety and Tolerance of Regadenoson in Subjects With Renal Impairment |
| NCT01101698 | PHASE4 | UNKNOWN | Vitamin K2 and Vessel Calcification in Chronic Kidney Disease Patients |
| NCT01150201 | PHASE4 | COMPLETED | Aliskiren Combined With Losartan in Proteinuric, Non-diabetic Chronic Kidney Disease |
| NCT01155141 | PHASE4 | COMPLETED | Idiopathic Focal Segmental Glomerulosclerosis (FSGS) and Treatment With ACTH |
| NCT01228279 | PHASE4 | COMPLETED | Sympathetic Activity in Patients With End-stage Renal Disease on Peritoneal Dialysis |
| NCT01334333 | PHASE4 | COMPLETED | Comparison of Medication Adherence Between Once and Twice Daily Tacrolimus in Stable Renal Transplant Recipients |
| NCT01437943 | PHASE4 | TERMINATED | Effect of Short Term Aliskiren Treatment in Kidney Transplant Patients |
| NCT01545479 | PHASE4 | COMPLETED | Increased Renal Oxygenation and Angiotensin Converting Enzyme Inhibition |
| NCT01614431 | PHASE4 | COMPLETED | N Acetyl Cysteine for Cystinosis Patients |
| NCT01631149 | PHASE4 | COMPLETED | Effect of Deep BLock on Intraoperative Surgical Conditions |
| NCT01722513 | PHASE4 | UNKNOWN | Efficacy and Safety of Alprostadil Prevent Contrast Induced Nephropathy |
| NCT01985360 | PHASE4 | COMPLETED | ISCHEMIA-Chronic Kidney Disease Trial |
| NCT02311010 | PHASE4 | UNKNOWN | Practical Use of Advagraf de Novo After Kidney Transplantation According to Recipient Genetic Polymorphism |
| NCT02413073 | PHASE4 | COMPLETED | Whole Body Vibration in Kidney Disease |
| NCT02444013 | PHASE4 | UNKNOWN | Folic Acid for Prevention of Contrast Induced Nephropathy |
| NCT02663713 | PHASE4 | COMPLETED | A Randomized, Pharmacodynamic Comparison of Low Dose Ticagrelor to Clopidogrel in Patients With Prior Myocardial Infarction |
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Related Atlas pages
- Associated diseases: COACH syndrome 1, Meckel syndrome, type 3, Joubert syndrome 6, nephronophthisis 11, Joubert syndrome, Meckel syndrome, type 1, Senior-Boichis syndrome, ciliopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atypical hemolytic-uremic syndrome, Bardet-Biedl syndrome, Bardet-Biedl syndrome 14, ciliopathy, COACH syndrome 1, coloboma, coloboma of iris, congenital nervous system disorder, cystic kidney disease, Joubert syndrome, Joubert syndrome 1, Joubert syndrome 6, Joubert syndrome and related disorders, kidney disorder, kidney failure, Meckel syndrome, Meckel syndrome, type 3, nephronophthisis, nephronophthisis 11, oligohydramnios, pancreatitis, pathologic nystagmus, peritonitis, RHYNS syndrome, Senior-Boichis syndrome, spastic ataxia