TMEM9B-AS1

Summary

TMEM9B-AS1 (TMEM9B antisense RNA 1, HGNC:19230) is a long non-coding RNA gene on chromosome 11p15.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19230
Approved symbol	TMEM9B-AS1
Name	TMEM9B antisense RNA 1
Location	11p15.4
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254860
Ensembl biotype	lncRNA
Entrez	493900
RNAcentral	URS00003F075B — lncRNA, 1053 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000525484, ENST00000532599, ENST00000534349, ENST00000657967, ENST00000686329, ENST00000689197, ENST00000783062, ENST00000783063, ENST00000783064, ENST00000783065, ENST00000783066, ENST00000783067, ENST00000783068, ENST00000783070, ENST00000783072, ENST00000783074, ENST00000783076, ENST00000783077

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000525484 — 5 exons

Exon	Start	End
ENSE00002161821	8966541	8966656
ENSE00002178997	8965904	8966044
ENSE00002190401	8967839	8968041
ENSE00004156751	8964507	8965148
ENSE00004156778	8976165	8976711

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 85.89.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.9159 / max 80.7129, expressed in 1507 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
112954	2.3665	1232
112953	1.5495	836

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	85.89	gold quality
right adrenal gland	UBERON:0001233	81.51	gold quality
hindlimb stylopod muscle	UBERON:0004252	80.72	gold quality
right adrenal gland cortex	UBERON:0035827	80.48	gold quality
fallopian tube	UBERON:0003889	80.43	gold quality
gastrocnemius	UBERON:0001388	79.62	gold quality
left adrenal gland cortex	UBERON:0035825	79.62	gold quality
muscle of leg	UBERON:0001383	79.34	gold quality
left adrenal gland	UBERON:0001234	79.01	gold quality
ovary	UBERON:0000992	78.84	gold quality
right ovary	UBERON:0002118	78.76	gold quality
adrenal gland	UBERON:0002369	78.74	gold quality
left ovary	UBERON:0002119	78.68	gold quality
skeletal muscle tissue	UBERON:0001134	78.17	gold quality
endometrium	UBERON:0001295	77.61	gold quality
stromal cell of endometrium	CL:0002255	77.23	gold quality
adrenal tissue	UBERON:0018303	76.59	gold quality
fundus of stomach	UBERON:0001160	76.45	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	76.23	gold quality
endocervix	UBERON:0000458	75.63	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.57	gold quality
sural nerve	UBERON:0015488	75.50	gold quality
left uterine tube	UBERON:0001303	75.45	gold quality
body of uterus	UBERON:0009853	75.10	gold quality
uterine cervix	UBERON:0000002	74.86	gold quality
skin of abdomen	UBERON:0001416	74.83	gold quality
lower esophagus	UBERON:0013473	74.77	gold quality
lower esophagus muscularis layer	UBERON:0035833	74.77	gold quality
islet of Langerhans	UBERON:0000006	74.76	gold quality
smooth muscle tissue	UBERON:0001135	74.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.