TNFRSF19
gene geneOn this page
Also known as TAJ-alphaTROYTAJTRADE
Summary
TNFRSF19 (TNF receptor superfamily member 19, HGNC:11915) is a protein-coding gene on chromosome 13q12.12, encoding Tumor necrosis factor receptor superfamily member 19 (Q9NS68). Can mediate activation of JNK and NF-kappa-B.
The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor is highly expressed during embryonic development. It has been shown to interact with TRAF family members, and to activate JNK signaling pathway when overexpressed in cells. This receptor is capable of inducing apoptosis by a caspase-independent mechanism, and it is thought to play an essential role in embryonic development. Alternatively spliced transcript variants encoding distinct isoforms have been described.
Source: NCBI Gene 55504 — RefSeq curated summary.
At a glance
- GWAS associations: 10
- Clinical variants (ClinVar): 87 total
- MANE Select transcript:
NM_148957
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11915 |
| Approved symbol | TNFRSF19 |
| Name | TNF receptor superfamily member 19 |
| Location | 13q12.12 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TAJ-alpha, TROY, TAJ, TRADE |
| Ensembl gene | ENSG00000127863 |
| Ensembl biotype | protein_coding |
| OMIM | 606122 |
| Entrez | 55504 |
Gene structure
Transcript identifiers
Ensembl transcripts: 16 — 15 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000248484, ENST00000382258, ENST00000382263, ENST00000403372, ENST00000464735, ENST00000862810, ENST00000862811, ENST00000862812, ENST00000862813, ENST00000862814, ENST00000862815, ENST00000862816, ENST00000862817, ENST00000862818, ENST00000912233, ENST00000960865
RefSeq mRNA: 5 — MANE Select: NM_148957
NM_001204458, NM_001204459, NM_001354985, NM_018647, NM_148957
CCDS: CCDS55893, CCDS9301, CCDS9302
Canonical transcript exons
ENST00000248484 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000678937 | 23667980 | 23668082 |
| ENSE00000678938 | 23660365 | 23660490 |
| ENSE00000678939 | 23659050 | 23659214 |
| ENSE00001412384 | 23668692 | 23669097 |
| ENSE00001491479 | 23673372 | 23676093 |
| ENSE00003463648 | 23615867 | 23616045 |
| ENSE00003522899 | 23593345 | 23593455 |
| ENSE00003624759 | 23590150 | 23590252 |
| ENSE00003661340 | 23626707 | 23626792 |
| ENSE00003904322 | 23570412 | 23570848 |
Expression profiles
Bgee: expression breadth ubiquitous, 224 present calls, max score 98.53.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 8.9679 / max 345.4536, expressed in 1088 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 134407 | 4.2906 | 1028 |
| 134401 | 3.0956 | 534 |
| 134405 | 0.4131 | 118 |
| 134408 | 0.3182 | 157 |
| 134409 | 0.3103 | 133 |
| 134402 | 0.2203 | 125 |
| 134403 | 0.1570 | 71 |
| 134404 | 0.0937 | 46 |
| 134406 | 0.0415 | 14 |
| 134410 | 0.0274 | 9 |
Top tissues by expression
252 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| upper arm skin | UBERON:0004263 | 98.53 | gold quality |
| upper leg skin | UBERON:0004262 | 98.27 | gold quality |
| bronchial epithelial cell | CL:0002328 | 96.93 | gold quality |
| bronchus | UBERON:0002185 | 96.30 | gold quality |
| skin of hip | UBERON:0001554 | 95.68 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 95.25 | gold quality |
| oviduct epithelium | UBERON:0004804 | 92.98 | gold quality |
| skin of abdomen | UBERON:0001416 | 92.89 | gold quality |
| ventricular zone | UBERON:0003053 | 92.87 | gold quality |
| zone of skin | UBERON:0000014 | 92.44 | gold quality |
| right uterine tube | UBERON:0001302 | 91.59 | gold quality |
| trachea | UBERON:0003126 | 91.45 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 91.35 | gold quality |
| skin of leg | UBERON:0001511 | 91.25 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.02 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 90.32 | gold quality |
| nipple | UBERON:0002030 | 89.88 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 89.23 | gold quality |
| fallopian tube | UBERON:0003889 | 89.05 | gold quality |
| parotid gland | UBERON:0001831 | 88.85 | gold quality |
| myocardium | UBERON:0002349 | 88.65 | gold quality |
| cardiac atrium | UBERON:0002081 | 87.87 | gold quality |
| right atrium auricular region | UBERON:0006631 | 87.87 | gold quality |
| heart right ventricle | UBERON:0002080 | 87.76 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 87.51 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 87.36 | gold quality |
| caput epididymis | UBERON:0004358 | 87.33 | gold quality |
| mammalian vulva | UBERON:0000997 | 86.70 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 86.37 | gold quality |
| minor salivary gland | UBERON:0001830 | 86.30 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.51 |
| E-MTAB-7303 | no | 303.78 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MSC
miRNA regulators (miRDB)
7 targeting TNFRSF19, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-3679-3P | 99.64 | 69.88 | 1599 |
| HSA-MIR-519A-2-5P | 98.78 | 71.74 | 1401 |
| HSA-MIR-520B-5P | 98.78 | 71.74 | 1401 |
| HSA-MIR-3192-3P | 98.62 | 65.80 | 970 |
Literature-anchored findings (GeneRIF, showing 24)
- TROY regulates melanoma growth. (PMID:17187358)
- the ternary complex of NgR/TROY/LINGO-1 expressed on astrocytes, macrophages/microglia and neurones, by interacting with Nogo-A on oligodendrocytes, might modulate glial-neuronal interactions in demyelinating lesions of multiple sclerosis (PMID:17239012)
- Findings provide new insights into the pathogenesis of NPC by highlighting the involvement of pathways related to TNFRSF19 and MDS1-EVI1 in addition to HLA molecules. (PMID:20512145)
- TNFRSF19 overexpression in glioma cells activates Rac1 signaling in a Pyk2-dependent manner to drive glioma cell invasion and migration (PMID:20881009)
- The FAM134B and TNFRSF19 showed a dramatically strong synergistic epistasis in explaining the genetic dissection of the susceptibility to complex vascular dementia. (PMID:21127458)
- study demonstrated that TNFR2 and TROY mRNA levels are enhanced in cutaneous squamous cell carcinoma cells compared to healthy ones in a Tunisian population (PMID:22057614)
- TROY is up-regulated in human colorectal cancer cell lines and in intestinal tumors in mice. It functions as a negative modulator of the Wnt pathway in LGR5-positive stem cells. (PMID:23142137)
- Results show aberrant expression and/or signaling by TROY as a contributor to the dispersion of glioblastoma cells and therapeutic resistance. (PMID:23699535)
- the association of RhoGDIalpha with TROY contributed to TROY-dependent RhoA activation and neurite outgrowth inhibition after Nogo-66 stimulation. (PMID:24129566)
- TNFRSF19 may contribute to the development of colorectal tumors with deregulated beta-catenin activity. (PMID:24623448)
- Glioblastoma tumors (GB) with elevated TROY expression have a statistically positive correlation with increased EGFR expression. TROY expression significantly increases the capacity of EGF to stimulate GB cell invasion, whereas depletion of TROY expression blocks EGF stimulation of glioblastoma cell invasion. TROY expression modulates EGFR signaling by facilitating EGFR activation and delaying its internalization. (PMID:29117939)
- Study showed that TNFRSF19 is highly expressed in nasopharyngeal carcinoma (NPC) and is required for cell proliferation and NPC development. TNFRSF19 was not involved in NFkappaB activation or associated with TRAF proteins. TbetaRI was identified as a specific binding partner for TNFRSF19. TNFRSF19 bound the kinase domain of TbetaRI in the cytoplasm, thereby blocking Smad2/3 association with TbetaRI and subsequent sign… (PMID:29735548)
- TROY signaling role in the glioblastoma cell invasion and survival.PDZ-RhoGEF is an effector of TROY signaling. (PMID:30219706)
- isruption of the TROY/RKIP interaction using the TAT-TROY (234-371 aa) protein reduced the glioma development in xenografted mice. This suggests the TROY/RKIP interaction is a potential target for therapy of gliomas. (PMID:30337686)
- TROY may therefore be a new molecular marker to aid in identifying and selecting patients undergoing radical cystectomy who could potentially benefit from multimodal treatment. (PMID:30475756)
- An inverse trend was found between TROY down-regulation and LGR5 up-regulation in gastric cancer tissue. (PMID:30501144)
- three inherited variations at rs17336602 (G>C), rs4770489 (A>G), and rs34354770 (A>C) in 13q12.12 contribute to lung cancer risk and development by declining p53-responsive enhancer-mediated TNFRSF19 activation (PMID:31126313)
- tumor marker tumor necrosis factor receptor superfamily member 19 as part of a four gene transcript score has prognostic value for metastatic-lethal progression in men treated for localized prostate cancer (PMID:31376183)
- Downregulation of TNFRSF19 and RAB43 by a novel miRNA, miR-HCC3, promotes proliferation and epithelial-mesenchymal transition in hepatocellular carcinoma cells. (PMID:32102752)
- TROY signals through JAK1-STAT3 to promote glioblastoma cell migration and resistance. (PMID:32629176)
- Troy/Tnfrsf19 marks epidermal cells that govern interfollicular epidermal renewal and cornification. (PMID:34358453)
- Unique molecular characteristics of NAFLD-associated liver cancer accentuate beta-catenin/TNFRSF19-mediated immune evasion. (PMID:35351523)
- Long noncoding RNA SNHG8 promotes chemoresistance in gastric cancer via binding with hnRNPA1 and stabilizing TROY expression. (PMID:35354542)
- TNFRSF19 within the 13q12.12 Risk Locus Functions as a Lung Cancer Suppressor by Binding Wnt3a to Inhibit Wnt/beta-Catenin Signaling. (PMID:38047807)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tnfrsf19 | ENSDARG00000041869 |
| mus_musculus | Tnfrsf19 | ENSMUSG00000060548 |
| rattus_norvegicus | Tnfrsf19 | ENSRNOG00000014265 |
Paralogs (2): EDA2R (ENSG00000131080), EDAR (ENSG00000135960)
Protein
Protein identifiers
Tumor necrosis factor receptor superfamily member 19 — Q9NS68 (reviewed: Q9NS68)
Alternative names: TRADE, Toxicity and JNK inducer
All UniProt accessions (1): Q9NS68
UniProt curated annotations — full annotation on UniProt →
Function. Can mediate activation of JNK and NF-kappa-B. May promote caspase-independent cell death.
Subunit / interactions. Associates with TRAF1, TRAF2, TRAF3 and TRAF5. Interacts with LINGO1.
Subcellular location. Membrane.
Tissue specificity. Highly expressed in prostate. Detected at lower levels in thymus, spleen, testis, uterus, small intestine, colon and peripheral blood leukocytes.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NS68-1 | 1, TAJ-alpha, TRADEalpha | yes |
| Q9NS68-2 | 2, TRADEbeta | |
| Q9NS68-3 | 3 |
RefSeq proteins (5): NP_001191387, NP_001191388, NP_001341914, NP_061117, NP_683760* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001368 | TNFR/NGFR_Cys_rich_reg | Domain |
| IPR022342 | TNFR_19 | Family |
| IPR034047 | TNFRSF19_N | Domain |
| IPR047526 | TNR19/27/EDAR | Family |
UniProt features (26 total): disulfide bond 8, sequence conflict 4, sequence variant 3, repeat 3, splice variant 2, topological domain 2, signal peptide 1, chain 1, transmembrane region 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NS68-F1 | 60.50 | 0.24 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (8): 49–62, 52–72, 75–89, 92–106, 95–114, 117–135, 138–149, 34–46
Glycosylation sites (1): 105
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 212 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, GOBP_RESPONSE_TO_PEPTIDE, GCANCTGNY_MYOD_Q6, GOBP_CANONICAL_NF_KAPPAB_SIGNAL_TRANSDUCTION, GAUSSMANN_MLL_AF4_FUSION_TARGETS_C_UP, GOBP_POSITIVE_REGULATION_OF_MAPK_CASCADE, CAGCTG_AP4_Q5, AACWWCAANK_UNKNOWN, MARTINEZ_RB1_TARGETS_UP, TCF4_Q5, FREAC3_01, MARTINEZ_RB1_TARGETS_DN, GOBP_JNK_CASCADE, IRF1_Q6, RIGGI_EWING_SARCOMA_PROGENITOR_DN
GO Biological Process (6): hair follicle development (GO:0001942), apoptotic process (GO:0006915), JNK cascade (GO:0007254), positive regulation of canonical NF-kappaB signal transduction (GO:0043123), positive regulation of JNK cascade (GO:0046330), tumor necrosis factor-mediated signaling pathway (GO:0033209)
GO Molecular Function (3): tumor necrosis factor receptor activity (GO:0005031), signaling receptor activity (GO:0038023), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| hair cycle process | 1 |
| anatomical structure development | 1 |
| skin epidermis development | 1 |
| programmed cell death | 1 |
| apoptotic signaling pathway | 1 |
| execution phase of apoptosis | 1 |
| MAPK cascade | 1 |
| canonical NF-kappaB signal transduction | 1 |
| regulation of canonical NF-kappaB signal transduction | 1 |
| positive regulation of intracellular signal transduction | 1 |
| JNK cascade | 1 |
| positive regulation of MAPK cascade | 1 |
| regulation of JNK cascade | 1 |
| cytokine-mediated signaling pathway | 1 |
| cellular response to tumor necrosis factor | 1 |
| death receptor activity | 1 |
| tumor necrosis factor-mediated signaling pathway | 1 |
| tumor necrosis factor binding | 1 |
| molecular transducer activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
730 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TNFRSF19 | LINGO1 | Q96FE5 | 996 |
| TNFRSF19 | RTN4R | Q9BZR6 | 994 |
| TNFRSF19 | OMG | P23515 | 942 |
| TNFRSF19 | MAG | P20916 | 839 |
| TNFRSF19 | LGR5 | O75473 | 780 |
| TNFRSF19 | RTN4 | Q9NQC3 | 751 |
| TNFRSF19 | RELT | Q969Z4 | 722 |
| TNFRSF19 | RTN4RL2 | Q86UN3 | 721 |
| TNFRSF19 | MIPEP | Q99797 | 703 |
| TNFRSF19 | TNFRSF21 | O75509 | 667 |
| TNFRSF19 | NKD1 | Q969G9 | 640 |
| TNFRSF19 | NGFR | P08138 | 625 |
| TNFRSF19 | AXIN2 | Q9Y2T1 | 599 |
| TNFRSF19 | COX7B2 | Q8TF08 | 589 |
| TNFRSF19 | MECOM | Q03112 | 572 |
IntAct
16 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TNFRSF19 | PEBP1 | psi-mi:“MI:0915”(physical association) | 0.460 |
| TNFRSF19 | PHB1 | psi-mi:“MI:0915”(physical association) | 0.460 |
| TNFRSF19 | ARHGDIA | psi-mi:“MI:0915”(physical association) | 0.460 |
| TNFRSF19 | PHB1 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| TNFRSF19 | PEBP1 | psi-mi:“MI:0403”(colocalization) | 0.460 |
| TNFRSF19 | ARHGDIA | psi-mi:“MI:0403”(colocalization) | 0.460 |
| TRAF1 | TNFRSF19 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TNFRSF19 | TRAF2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TNFRSF19 | TRAF5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF19 | PLD2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (80): TNFRSF19 (Synthetic Lethality), CST2 (Affinity Capture-MS), TYK2 (Affinity Capture-MS), KLK10 (Affinity Capture-MS), ZNF101 (Affinity Capture-MS), CALML5 (Affinity Capture-MS), AMY1C (Affinity Capture-MS), CRNN (Affinity Capture-MS), FLG (Affinity Capture-MS), CST1 (Affinity Capture-MS), PHLDB3 (Affinity Capture-MS), ZNF865 (Affinity Capture-MS), ZNF100 (Affinity Capture-MS), PLEKHG4 (Affinity Capture-MS), CST4 (Affinity Capture-MS)
ESM2 similar proteins: A2VE56, A6QPH9, I3LHS8, O08781, O14545, O54836, P0C6S7, Q14CM0, Q3SZY7, Q3U2E2, Q497H0, Q4R3D6, Q4R970, Q58D05, Q5F3F2, Q5FWF5, Q5R7S6, Q5RDJ2, Q5U2M7, Q5VT97, Q66J85, Q68FE8, Q69Z69, Q6DGF4, Q6FIF0, Q6N043, Q6P2K3, Q70EL2, Q7Z6G8, Q8BIZ1, Q8IWR0, Q8K214, Q8K387, Q8N7W2, Q8N9Z9, Q8NA31, Q8ND82, Q8QFX1, Q91YD3, Q96B23
Diamond homologs: Q8BX35, Q9HAV5, Q9JLL3, Q9N092, Q9NS68, O95407, Q08DP3, Q2KI80, Q5FVJ4, Q8BRJ3, Q8BX43, Q8IUW5, Q8K2J7, Q8NC24, Q969Z4, Q90VY2, Q9R187, Q9UNE0, Q5F3A4, O35305
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
87 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 63 |
| Likely benign | 7 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1333 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 13:23579531:T:A | donor_loss | 1.0000 |
| 13:23593343:A:AG | acceptor_gain | 1.0000 |
| 13:23593344:G:GA | acceptor_gain | 1.0000 |
| 13:23593344:GT:G | acceptor_gain | 1.0000 |
| 13:23593344:GTC:G | acceptor_gain | 1.0000 |
| 13:23593344:GTCAT:G | acceptor_gain | 1.0000 |
| 13:23615866:GGAAT:G | acceptor_gain | 1.0000 |
| 13:23616044:GG:G | donor_gain | 1.0000 |
| 13:23616045:GG:G | donor_gain | 1.0000 |
| 13:23616046:G:GG | donor_gain | 1.0000 |
| 13:23616047:T:G | donor_loss | 1.0000 |
| 13:23626788:GCACT:G | donor_gain | 1.0000 |
| 13:23659046:TCA:T | acceptor_loss | 1.0000 |
| 13:23659047:CAGGT:C | acceptor_loss | 1.0000 |
| 13:23659048:A:AG | acceptor_gain | 1.0000 |
| 13:23659048:A:C | acceptor_loss | 1.0000 |
| 13:23659049:G:GG | acceptor_gain | 1.0000 |
| 13:23659049:GGT:G | acceptor_gain | 1.0000 |
| 13:23659182:G:GG | donor_gain | 1.0000 |
| 13:23659210:CAGCT:C | donor_gain | 1.0000 |
| 13:23659211:AGCT:A | donor_gain | 1.0000 |
| 13:23659212:GCT:G | donor_gain | 1.0000 |
| 13:23659212:GCTG:G | donor_gain | 1.0000 |
| 13:23659213:CT:C | donor_gain | 1.0000 |
| 13:23659215:G:GG | donor_gain | 1.0000 |
| 13:23590250:TTGGT:T | donor_loss | 0.9900 |
| 13:23590251:TGGT:T | donor_loss | 0.9900 |
| 13:23590252:GGT:G | donor_loss | 0.9900 |
| 13:23590253:G:GG | donor_gain | 0.9900 |
| 13:23590253:GTAA:G | donor_loss | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000073601 (13:23589268 A>G), RS1000080530 (13:23656296 C>T), RS1000128939 (13:23640978 T>C), RS1000135042 (13:23663064 G>A,C), RS1000160814 (13:23573205 G>A), RS1000181244 (13:23675720 C>G,T), RS1000190139 (13:23631730 T>G), RS1000195852 (13:23589031 G>A,T), RS1000197902 (13:23656547 A>G), RS1000212706 (13:23606041 G>A,C,T), RS1000222956 (13:23570531 G>A), RS1000332227 (13:23642936 G>A), RS1000341255 (13:23638730 C>G), RS1000372844 (13:23625085 A>T), RS1000377270 (13:23650016 T>G)
Disease associations
OMIM: gene MIM:606122 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
10 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000687_2 | Nasopharyngeal carcinoma | 2.000000e-09 |
| GCST000687_7 | Nasopharyngeal carcinoma | 1.000000e-08 |
| GCST001474_4 | Hypothyroidism | 5.000000e-06 |
| GCST001523_42 | Visceral adipose tissue adjusted for BMI | 8.000000e-06 |
| GCST002587_19 | Blood pressure (smoking interaction) | 4.000000e-07 |
| GCST003098_13 | Diabetic kidney disease | 4.000000e-06 |
| GCST005113_3 | Nasopharyngeal carcinoma | 5.000000e-10 |
| GCST006585_1711 | Blood protein levels | 2.000000e-10 |
| GCST006979_1091 | Heel bone mineral density | 8.000000e-14 |
| GCST006979_1092 | Heel bone mineral density | 7.000000e-14 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0006335 | systolic blood pressure |
| EFO:0006526 | pack-years measurement |
| EFO:0009270 | heel bone mineral density |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: catalytic receptor — Tumour necrosis factor (TNF) receptor family
CTD chemical–gene interactions
83 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases abundance, increases expression, decreases expression, affects cotreatment | 5 |
| Benzo(a)pyrene | increases methylation, affects methylation, decreases expression | 5 |
| Valproic Acid | affects expression, decreases expression, increases expression | 5 |
| Arsenic | affects expression, decreases expression, increases abundance, affects cotreatment, increases expression | 4 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 3 |
| bisphenol A | affects expression, decreases expression | 2 |
| trichostatin A | affects expression, increases expression | 2 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Calcitriol | decreases expression, increases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Progesterone | affects cotreatment, decreases expression | 2 |
| Tetrachlorodibenzodioxin | decreases expression | 2 |
| Tretinoin | increases expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | affects expression, increases expression | 2 |
| 8-Bromo Cyclic Adenosine Monophosphate | decreases expression, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | decreases phosphorylation | 1 |
| methylmercuric chloride | decreases expression | 1 |
| propionaldehyde | decreases expression | 1 |
| lead acetate | increases expression | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| beta-lapachone | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| ferrous chloride | decreases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): diabetic kidney disease, hypothyroidism, nasopharyngeal neoplasm