TNK1

gene
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Also known as KOS1

Summary

TNK1 (tyrosine kinase non receptor 1, HGNC:11940) is a protein-coding gene on chromosome 17p13.1, encoding Non-receptor tyrosine-protein kinase TNK1 (Q13470). Involved in negative regulation of cell growth.

The protein encoded by this gene belongs to the tyrosine protein kinase family. Tyrosine protein kinases are important regulators of intracellular signal transduction pathways, mediating cellular proliferation, survival, and development. This gene is highly expressed in fetal tissues and at lower levels in few adult tissues, thus may function in signaling pathways utilized broadly during fetal development, and more selectively in adult tissues. It plays a negative regulatory role in the Ras-Raf1-MAPK pathway, and knockout mice have been shown to develop spontaneous tumors, suggesting a role as a tumor suppressor gene. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.

Source: NCBI Gene 8711 — RefSeq curated summary.

At a glance

  • Clinical variants (ClinVar): 129 total
  • Druggable target: yes — 49 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_003985

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:11940
Approved symbolTNK1
Nametyrosine kinase non receptor 1
Location17p13.1
Locus typegene with protein product
StatusApproved
AliasesKOS1
Ensembl geneENSG00000174292
Ensembl biotypeprotein_coding
OMIM608076
Entrez8711

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 4 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay

ENST00000570896, ENST00000574794, ENST00000575268, ENST00000576136, ENST00000576207, ENST00000576716, ENST00000576812, ENST00000577009, ENST00000688331

RefSeq mRNA: 2 — MANE Select: NM_003985 NM_001251902, NM_003985

CCDS: CCDS45602, CCDS58510

Canonical transcript exons

ENST00000639010 — 0 exons

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 84.10.

FANTOM5 (CAGE): breadth broad, TPM avg 2.1950 / max 98.1469, expressed in 670 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter IDTPM avgSamples expressed
1591622.0369594
1591630.158171

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
mucosa of transverse colonUBERON:000499184.10gold quality
cerebellar hemisphereUBERON:000224583.34gold quality
right hemisphere of cerebellumUBERON:001489083.33gold quality
cerebellumUBERON:000203783.31gold quality
cerebellar cortexUBERON:000212983.31gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047381.65gold quality
body of stomachUBERON:000116180.87gold quality
transverse colonUBERON:000115780.29gold quality
skin of legUBERON:000151179.84gold quality
zone of skinUBERON:000001479.69gold quality
minor salivary glandUBERON:000183079.62gold quality
duodenumUBERON:000211479.50gold quality
skin of abdomenUBERON:000141679.47gold quality
saliva-secreting glandUBERON:000104479.20gold quality
small intestine Peyer’s patchUBERON:000345479.18gold quality
body of pancreasUBERON:000115079.16gold quality
stomachUBERON:000094579.02gold quality
small intestineUBERON:000210879.01gold quality
esophagus mucosaUBERON:000246978.95gold quality
lower esophagus mucosaUBERON:003583478.31gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099178.28gold quality
pancreasUBERON:000126478.22gold quality
prostate glandUBERON:000236778.08gold quality
olfactory segment of nasal mucosaUBERON:000538677.79gold quality
intestineUBERON:000016076.86gold quality
islet of LangerhansUBERON:000000676.83gold quality
colonUBERON:000115576.69gold quality
right lobe of thyroid glandUBERON:000111976.64gold quality
fundus of stomachUBERON:000116076.56gold quality
metanephros cortexUBERON:001053376.56gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

ExperimentMarker?Max mean expression
E-ANND-3no2.28

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): SP1, SP3, TFAP2A

miRNA regulators (miRDB)

28 targeting TNK1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-4262100.0073.263931
HSA-MIR-181A-5P99.9972.962995
HSA-MIR-181B-5P99.9972.972996
HSA-MIR-181C-5P99.9972.952996
HSA-MIR-181D-5P99.9973.042997
HSA-MIR-380-3P99.8970.181978
HSA-MIR-4728-5P99.8569.394718
HSA-MIR-6785-5P99.8268.684428
HSA-MIR-4668-5P99.7970.583782
HSA-MIR-149-3P99.7268.223963
HSA-MIR-548AU-3P99.7068.221373
HSA-MIR-6883-5P99.6968.053785
HSA-MIR-64699.6867.841645
HSA-MIR-580-3P99.6769.231841
HSA-MIR-7106-5P99.5367.473574
HSA-MIR-317199.4969.06776
HSA-MIR-29799.4069.581418
HSA-MIR-4520-2-3P99.1469.281009
HSA-MIR-6852-3P98.5467.601468
HSA-MIR-224-5P98.3370.121256
HSA-MIR-7850-5P98.1267.281111
HSA-MIR-3691-3P97.9065.97791
HSA-MIR-10526-3P97.8664.971342
HSA-MIR-6783-5P97.6767.211528
HSA-MIR-663B97.4062.91664
HSA-MIR-3173-5P97.3565.821282
HSA-MIR-6799-3P97.3565.601302
HSA-MIR-4776-5P97.1466.63405

Literature-anchored findings (GeneRIF, showing 11)

  • TNK1 therefore acts as a novel molecular switch that can determine the properties of TNFalpha signaling and therefore cell death. (PMID:17471239)
  • Activated Tnk1 kinase is associated with Hodgkin’s lymphoma. (PMID:20090780)
  • The application of functional genomics by using high-throughput-RNAi screens has allowed us to identify TNK1 as a growth-associated kinase in pancreatic cancer cells. (PMID:21536687)
  • The activated TNK1 potentiates JAK-STAT signaling through dual phosphorylation of STAT1 at tyrosine 701 and serine 727 amino acid positions. (PMID:24449862)
  • the Single nucleotide polymorphisms rs11136000 of CLU, rs541458 of PICALM, and rs1554948 of TNK1 according to the three age groups 50-65 years (group 1), 66-80 years (group 2), and 80+ years (group 3) in 569 older subjects without cognitive impairment (NoCI) and 520 Alzheimer’s disease (AD) patients, were studied. (PMID:28631188)
  • TNK1 was found to be deregulated in the gut in murine and porcine trauma models and human inflammatory bowel disease. Thus, TNK1 might be a target during MODS to prevent damage in several organs, notably the gut. (PMID:30320600)
  • Thirty-Eight-Negative Kinase 1 Is a Mediator of Acute Kidney Injury in Experimental and Clinical Traumatic Hemorrhagic Shock. (PMID:32983160)
  • Polymorphism rs11867353 of Tyrosine Kinase Non-Receptor 1 (TNK1) Gene Is a Novel Genetic Marker for Alzheimer’s Disease. (PMID:33070267)
  • TNK1 is a ubiquitin-binding and 14-3-3-regulated kinase that can be targeted to block tumor growth. (PMID:34504101)
  • The noncatalytic regions of the tyrosine kinase Tnk1 are important for activity and substrate specificity. (PMID:36334623)
  • Fusion crystallization reveals the behavior of both the 1TEL crystallization chaperone and the TNK1 UBA domain. (PMID:37776857)

Cross-species orthologs

2 orthologs

OrganismSymbolGene ID
mus_musculusTnk1ENSMUSG00000001583
rattus_norvegicusTnk1ENSRNOG00000015578

Paralogs (32): FGR (ENSG00000000938), MATK (ENSG00000007264), BTK (ENSG00000010671), FYN (ENSG00000010810), STYK1 (ENSG00000060140), TNK2 (ENSG00000061938), TXK (ENSG00000074966), JAK2 (ENSG00000096968), ABL1 (ENSG00000097007), PTK6 (ENSG00000101213), HCK (ENSG00000101336), BMX (ENSG00000102010), CSK (ENSG00000103653), TYK2 (ENSG00000105397), JAK3 (ENSG00000105639), FRK (ENSG00000111816), ITK (ENSG00000113263), ZAP70 (ENSG00000115085), PTK2B (ENSG00000120899), SRMS (ENSG00000125508), TEC (ENSG00000135605), BLK (ENSG00000136573), ABL2 (ENSG00000143322), FER (ENSG00000151422), JAK1 (ENSG00000162434), SYK (ENSG00000165025), PTK2 (ENSG00000169398), YES1 (ENSG00000176105), FES (ENSG00000182511), LCK (ENSG00000182866), SRC (ENSG00000197122), LYN (ENSG00000254087)

Protein

Protein identifiers

Non-receptor tyrosine-protein kinase TNK1Q13470 (reviewed: Q13470)

Alternative names: CD38 negative kinase 1

All UniProt accessions (3): Q13470, I3L334, U3KPR9

UniProt curated annotations — full annotation on UniProt →

Function. Involved in negative regulation of cell growth. Has tumor suppressor properties. Plays a negative regulatory role in the Ras-MAPK pathway. May function in signaling pathways utilized broadly during fetal development and more selectively in adult tissues and in cells of the lymphohematopoietic system. Could specifically be involved in phospholipid signal transduction.

Subunit / interactions. Interacts with the SH3 domain of PLCG1 via its Pro-rich domain.

Subcellular location. Cytoplasm. Membrane.

Tissue specificity. Expressed in all umbilical cord blood, bone marrow and adult blood cell sub-populations and in several leukemia cell lines. Highly expressed in fetal blood, brain, lung, liver and kidney. Detected at lower levels in adult prostate, testis, ovary, small intestine and colon. Not expressed in adult lung, liver, kidney or brain.

Post-translational modifications. Autophosphorylated on tyrosine residues.

Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family.

Isoforms (2)

UniProt IDNamesCanonical?
Q13470-11yes
Q13470-22

RefSeq proteins (2): NP_001238831, NP_003976* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000719Prot_kinase_domDomain
IPR001245Ser-Thr/Tyr_kinase_cat_domDomain
IPR001452SH3_domainDomain
IPR008266Tyr_kinase_ASActive_site
IPR011009Kinase-like_dom_sfHomologous_superfamily
IPR017441Protein_kinase_ATP_BSBinding_site
IPR020635Tyr_kinase_cat_domDomain
IPR049587TNK-like_SAMDomain
IPR050198Non-receptor_tyrosine_kinasesFamily
IPR055175ACK/TNK-like_SAMDomain

Pfam: PF07714, PF22931

Catalyzed reactions (Rhea), 1 shown:

  • L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)

UniProt features (48 total): sequence conflict 15, modified residue 8, sequence variant 6, helix 5, domain 2, region of interest 2, turn 2, compositionally biased region 2, binding site 2, chain 1, splice variant 1, strand 1, active site 1

Structure

Experimental structures (PDB)

10 structures.

PDBMethodResolution (Å)
7TDYX-RAY DIFFRACTION1.53
7TCYX-RAY DIFFRACTION1.54
7T8JX-RAY DIFFRACTION1.89
9ZVUX-RAY DIFFRACTION1.96
9NGEX-RAY DIFFRACTION2.02
9Z2LX-RAY DIFFRACTION2.02
7U4ZX-RAY DIFFRACTION2.03
7U4WX-RAY DIFFRACTION2.1
9O0HX-RAY DIFFRACTION2.24
9CPLX-RAY DIFFRACTION2.4

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q13470-F173.010.41

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (1): 245 (proton acceptor)

Ligand- & substrate-binding residues (2): 122–130; 148

Post-translational modifications (8): 60, 96, 255, 502, 514, 519, 582, 411

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 82 (showing top): GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, MORF_RAD51L3, MODULE_120, MORF_CTSB, MORF_IL4, MODULE_99, MORF_THPO, MODULE_175, HAN_SATB1_TARGETS_DN, RGAGGAARY_PU1_Q6, MORF_ATF2, GOBP_PROTEIN_AUTOPHOSPHORYLATION, GOMF_PROTEIN_KINASE_ACTIVITY, GOMF_KINASE_ACTIVITY, MORF_PAX7

GO Biological Process (2): protein phosphorylation (GO:0006468), protein autophosphorylation (GO:0046777)

GO Molecular Function (8): protein tyrosine kinase activity (GO:0004713), non-membrane spanning protein tyrosine kinase activity (GO:0004715), ATP binding (GO:0005524), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)

GO Cellular Component (3): cytoplasm (GO:0005737), plasma membrane (GO:0005886), membrane (GO:0016020)

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cellular anatomical structure2
phosphorylation1
protein modification process1
protein phosphorylation1
protein kinase activity1
protein tyrosine kinase activity1
adenyl ribonucleotide binding1
purine ribonucleoside triphosphate binding1
nucleoside phosphate binding1
heterocyclic compound binding1
kinase activity1
phosphotransferase activity, alcohol group as acceptor1
catalytic activity, acting on a protein1
binding1
transferase activity, transferring phosphorus-containing groups1
catalytic activity1
intracellular anatomical structure1
membrane1
cell periphery1

Protein interactions and networks

STRING

466 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
TNK1CD38P28907690
TNK1PGBD1Q96JS3573
TNK1TNKSO95271537
TNK1EXOC3L2Q2M3D2507
TNK1GALPQ9UBC7487
TNK1SH3BP2P78314451
TNK1SH3BP5O60239408
TNK1PICALMQ13492393
TNK1SORL1Q92673366
TNK1SH3RF3Q8TEJ3353
TNK1GAB2Q9UQC2350
TNK1SORCS1Q8WY21324
TNK1MYH13Q9UKX3313
TNK1CLUP10909311
TNK1GAKO14976305

IntAct

32 interactions, top by confidence:

ABTypeScore
SFNTNK1psi-mi:“MI:0915”(physical association)0.690
TNK1SFNpsi-mi:“MI:0915”(physical association)0.690
YWHAETNK1psi-mi:“MI:0915”(physical association)0.670
ZNRD2MYO9Apsi-mi:“MI:0914”(association)0.530
TNK1psi-mi:“MI:0915”(physical association)0.400
HSP90AB1TNK1psi-mi:“MI:0915”(physical association)0.400
TNK1psi-mi:“MI:0915”(physical association)0.400
TNK1CDC37psi-mi:“MI:0915”(physical association)0.400
TNK1DDX5psi-mi:“MI:0914”(association)0.350
JUNpsi-mi:“MI:0914”(association)0.350
PLK4psi-mi:“MI:0914”(association)0.350
CAMK2Bpsi-mi:“MI:0914”(association)0.350
GAKpsi-mi:“MI:0914”(association)0.350
CDK1psi-mi:“MI:0914”(association)0.350
AURKApsi-mi:“MI:0914”(association)0.350
SGK1psi-mi:“MI:0914”(association)0.350
TBKBP1psi-mi:“MI:0914”(association)0.350
AHRRpsi-mi:“MI:0914”(association)0.350
Mpsi-mi:“MI:0914”(association)0.350
TNK1ACP1psi-mi:“MI:0914”(association)0.350
HLA-Cpsi-mi:“MI:0914”(association)0.350

BioGRID (57): DDX5 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), SFN (Affinity Capture-MS), YWHAB (Affinity Capture-MS), YWHAE (Affinity Capture-MS), YWHAG (Affinity Capture-MS), YWHAH (Affinity Capture-MS), YWHAQ (Affinity Capture-MS), YWHAZ (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS)

ESM2 similar proteins: A0A061IR73, A0A7N9VSG0, A7YSY2, D3KCC4, D3ZU57, D4A2B7, O08644, O15197, O19179, O43542, O75064, O95382, P0C0K6, P0C0K7, P51840, P52785, P52824, P54777, Q02846, Q05932, Q13470, Q13608, Q1HG60, Q3ZBE0, Q4KM32, Q5JZY3, Q643R3, Q6MG64, Q6NVG1, Q6ZPS2, Q76MJ5, Q7TNJ2, Q80SX8, Q8BYG9, Q8IZY2, Q8NFF5, Q8R5G7, Q8TDZ2, Q8WWN8, Q91V24

Diamond homologs: F1N9Y5, F1RDG9, G5EBZ8, G5EE56, O02466, O18735, O45539, O54967, P00519, P00520, P00521, P00522, P00525, P00526, P00528, P00533, P00534, P00535, P03949, P04412, P04626, P06239, P06240, P06494, P07948, P08103, P08630, P08631, P0CY46, P10447, P11273, P15209, P17713, P24786, P25911, P27446, P29317, P42679, P42680, P42681

SIGNOR signaling

7 interactions.

AEffectBMechanism
TNK1“up-regulates quantity”PLCG1binding
MARK4“down-regulates activity”TNK1phosphorylation
MARK1“down-regulates activity”TNK1phosphorylation
MARK2“down-regulates activity”TNK1phosphorylation
MARK3“down-regulates activity”TNK1phosphorylation
14-3-3“down-regulates activity”TNK1binding
TNK1“up-regulates activity”TNK1phosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 20 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
Transcriptional Regulation by TP53623.3×4e-05

Disease & clinical

Clinical variants and AI predictions

ClinVar

129 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance87
Likely benign12
Benign12

Top pathogenic / likely-pathogenic (0)

SpliceAI

2147 predictions. Top by Δscore:

VariantEffectΔscore
17:7383613:GAGT:Gdonor_gain1.0000
17:7383615:GT:Gdonor_gain1.0000
17:7383861:GATG:Gdonor_gain1.0000
17:7386560:GGCC:Gacceptor_gain1.0000
17:7386988:A:AGacceptor_gain1.0000
17:7386989:G:GGacceptor_gain1.0000
17:7386989:GCCCC:Gacceptor_gain1.0000
17:7387142:G:GTdonor_gain1.0000
17:7387150:GATGG:Gdonor_gain1.0000
17:7387151:A:Gdonor_gain1.0000
17:7388783:CACA:Cacceptor_loss1.0000
17:7388785:CA:Cacceptor_loss1.0000
17:7388786:A:AGacceptor_gain1.0000
17:7388786:AGGT:Aacceptor_gain1.0000
17:7388787:G:GCacceptor_loss1.0000
17:7388787:G:GGacceptor_gain1.0000
17:7388787:GGT:Gacceptor_gain1.0000
17:7388787:GGTG:Gacceptor_gain1.0000
17:7388880:CAAG:Cdonor_loss1.0000
17:7388882:AGGTA:Adonor_loss1.0000
17:7388885:T:Adonor_loss1.0000
17:7383612:AGAGT:Adonor_gain0.9900
17:7383613:GAGTG:Gdonor_gain0.9900
17:7383617:G:GGdonor_gain0.9900
17:7383705:CCA:Cacceptor_loss0.9900
17:7383706:CAG:Cacceptor_loss0.9900
17:7383708:G:Aacceptor_loss0.9900
17:7383862:ATGG:Adonor_loss0.9900
17:7383863:TGGTG:Tdonor_loss0.9900
17:7383866:T:Adonor_loss0.9900

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000533068 (17:7388340 G>A), RS1000547127 (17:7387289 G>A), RS1000562666 (17:7386051 T>G), RS1000641794 (17:7387011 G>A), RS1002262081 (17:7384552 C>G), RS1002356948 (17:7384232 C>G), RS1002471812 (17:7389776 A>C), RS1002665972 (17:7384897 C>T), RS1003200525 (17:7379341 T>C), RS1003202464 (17:7379489 G>A,C), RS1003476 (17:7386013 C>T), RS1003477 (17:7385941 C>A), RS1003522330 (17:7383947 C>G,T), RS1003621893 (17:7379107 C>T), RS1003805088 (17:7389178 G>A)

Disease associations

OMIM: gene MIM:608076 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL5334 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

49 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 400,916 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1171837PONATINIB48,955
CHEMBL1287853FEDRATINIB43,554
CHEMBL1289926AXITINIB415,732
CHEMBL1336SORAFENIB486,060
CHEMBL1983268ENTRECTINIB43,510
CHEMBL2028663DABRAFENIB412,430
CHEMBL2035187PACRITINIB43,345
CHEMBL2103743TOFACITINIB CITRATE41,672
CHEMBL2103830FOSTAMATINIB43,841
CHEMBL2105759BARICITINIB46,741
CHEMBL221959TOFACITINIB410,408
CHEMBL2403108CERITINIB48,551
CHEMBL3301622GILTERITINIB42,395
CHEMBL477772PAZOPANIB415,540
CHEMBL502835NINTEDANIB48,545
CHEMBL535SUNITINIB479,020
CHEMBL5416410DASATINIB4655
CHEMBL553ERLOTINIB4108,300
CHEMBL601719CRIZOTINIB414,403
CHEMBL608533MIDOSTAURIN47,259
CHEMBL300138ENZASTAURIN3
CHEMBL3137331DEFACTINIB3
CHEMBL3545154POZIOTINIB3
CHEMBL3545308ROCILETINIB3
CHEMBL483158ALISERTIB3
CHEMBL603469LESTAURTINIB3
CHEMBL1230609FORETINIB2
CHEMBL1231124AZD-14802
CHEMBL1721885SU-0148132
CHEMBL1738757REBASTINIB2

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Ack family

Most potent curated ligand interactions (2 total), top 2:

LigandActionAffinityParameter
xiliertinibInhibition6.59pIC50
XMD8-92Inhibition6.05pKd

Binding affinities (BindingDB)

12 measured of 12 human assays (12 total across all organisms); most potent 12 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
StaurosporineKD1.7 nM
PKC-412KD190 nM
4-[[7-[2,6-bis(fluoranyl)phenyl]-9-chloranyl-5H-pyrimido[5,4-d][2]benzazepin-2-yl]amino]benzoic acidKD300 nM
4-[4-({[4-chloro-3-(trifluoromethyl)phenyl]carbamoyl}amino)phenoxy]-N-methylpyridine-2-carboxamideKD370 nM
N-[4-({4-[(3-methyl-1H-pyrazol-5-yl)amino]-6-(4-methylpiperazin-1-yl)pyrimidin-2-yl}sulfanyl)phenyl]cyclopropanecarboxamideKD1100 nM
ERLOTINIB HYDROCHLORIDEKD1200 nM
1-[4-[(4-ethyl-1-piperazinyl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[[6-(methylamino)-4-pyrimidinyl]oxy]phenyl]ureaKD1400 nM
5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamideKD2600 nM
1-Acyl-1H-[1,2,4]triazole-3,5-diamine Analogue 3bKD3100 nM
N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamideKD3500 nM
13-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]-2,5,9-trimethyl-4-thia-2,6,9,12,14-pentazatricyclo[8.4.0.03,7]tetradeca-1(14),3(7),5,10,12-pentaen-8-oneIC503610 nMUS-12365696: Small-molecule focal adhesion kinase (FAK) inhibitors
3-((3R,4R)-4-methyl-3-(methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)piperidin-1-yl)-3-oxopropanenitrileKD5000 nM

ChEMBL bioactivities

205 potent at pChembl≥5 of 208 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.23IC500.584nMSTAUROSPORINE
8.87IC501.34nMSTAUROSPORINE
8.86IC501.37nMCHEMBL5772004
8.74Kd1.8nMTAE-684
8.73IC501.84nMSTAUROSPORINE
8.60Kd2.5nMSTAUROSPORINE
8.56IC502.77nMCHEMBL5756581
8.52Kd3nMXL-228
8.48IC503.33nMCHEMBL5853387
8.47IC503.36nMCHEMBL6022678
8.45IC503.59nMCHEMBL6058132
8.41IC503.92nMCHEMBL5993654
8.40Kd4nMCHEMBL4465866
8.39IC504.04nMCHEMBL5822783
8.38IC504.15nMCHEMBL5758369
8.36IC504.42nMCHEMBL5955353
8.30IC504.96nMCHEMBL5863835
8.30IC505nMCHEMBL6054797
8.29IC505.07nMNESUPARIB
8.26IC505.56nMCHEMBL5795408
8.25IC505.59nMCHEMBL5924751
8.24IC505.77nMCHEMBL5968204
8.23IC505.82nMCHEMBL5772340
8.22Kd6nMMK-5108
8.20IC506.29nMCHEMBL5851052
8.17IC506.77nMCHEMBL5932989
8.14IC507.28nMCHEMBL5989650
8.09IC508.05nMCHEMBL5879210
8.07IC508.46nMCHEMBL5758790
8.05IC508.81nMCHEMBL5785121
8.03Kd9.3nMLESTAURTINIB
8.02IC509.65nMCHEMBL6001595
8.01IC509.89nMCHEMBL5750491
7.99IC5010.2nMCHEMBL6013549
7.98IC5010.4nMCHEMBL5954322
7.98IC5010.4nMCHEMBL5949390
7.97IC5010.7nMCHEMBL5788476
7.97IC5010.6nMCHEMBL6015205
7.97IC5010.7nMCHEMBL6064240
7.96IC5011nMCHEMBL5997953
7.95IC5011.3nMCHEMBL5869375
7.94IC5011.4nMCHEMBL6032977
7.94IC5011.4nMCHEMBL5981093
7.94IC5011.4nMCHEMBL5958241
7.94IC5011.6nMCHEMBL6056405
7.93IC5011.8nMCHEMBL5985547
7.92IC5012.1nMCHEMBL5921357
7.91IC5012.4nMCHEMBL5890554
7.90IC5012.5nMCHEMBL6023648
7.90IC5012.6nMCHEMBL6060400

PubChem BioAssay actives

93 with measured affinity, of 526 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
(2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one1531911: Inhibition of human TNK1 using poly[Glu:Tyr] (4:1) as substrate by [gamma-33P]-ATP assayic500.0006uM
5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine624930: Binding constant for TNK1 kinase domainkd0.0018uM
4-N-(5-cyclopropyl-1H-pyrazol-3-yl)-6-(4-methylpiperazin-1-yl)-2-N-[(3-propan-2-yl-1,2-oxazol-5-yl)methyl]pyrimidine-2,4-diamine1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0030uM
3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]amino]ethoxy]ethoxy]ethoxy]ethyl]propanamide1526152: Binding affinity to recombinant human N-terminal GST-tagged TNK1 (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate incubated for 1 hr by TR-FRET assaykd0.0040uM
(15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one508114: Binding affinity to TNK1kd0.0093uM
3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-methylamino]ethoxy]ethoxy]ethoxy]ethyl]propanamide1526152: Binding affinity to recombinant human N-terminal GST-tagged TNK1 (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate incubated for 1 hr by TR-FRET assaykd0.0130uM
2,6-difluoro-N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]benzenesulfonamide1573275: Binding affinity to TNK1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assaykd0.0140uM
N-[3-[2-[2-ethoxy-4-(4-methylpiperazin-1-yl)anilino]-7-oxo-8-[[(2R)-oxolan-2-yl]methyl]pyrido[2,3-d]pyrimidin-6-yl]phenyl]-3-(trifluoromethyl)benzamide1988555: Binding affinity to TNK1 (unknown origin) assessed as dissociation constant by KINOME scan assaykd0.0150uM
1-N’-[3-fluoro-4-[6-methoxy-7-(3-morpholin-4-ylpropoxy)quinolin-4-yl]oxyphenyl]-1-N-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide624930: Binding constant for TNK1 kinase domainkd0.0210uM
2,5-difluoro-N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]benzenesulfonamide1573275: Binding affinity to TNK1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assaykd0.0240uM
6-[[5-fluoro-2-(3,4,5-trimethoxyanilino)pyrimidin-4-yl]amino]-2,2-dimethyl-4H-pyrido[3,2-b][1,4]oxazin-3-one624930: Binding constant for TNK1 kinase domainkd0.0250uM
2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)-1,3,5-triazine-2,4-diamine2161838: Inhibition of human N-terminal GST-fused TNK1 isoform 2 catalytic domain (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate measured after 5 hrs by off-chip mobility shift assay relative to controlic500.0268uM
Ceritinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0270uM
4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide2149625: Binding affinity to human TNK1 incubated for 45 mins by Kinobead based pull down assaykd0.0277uM
2-[2-methoxy-4-(4-methylpiperazin-1-yl)anilino]-5,11-dimethylpyrimido[4,5-b][1,4]benzodiazepin-6-one570548: Binding affinity to TNK1 by immobilized ligand displacement assaykd0.0290uM
Gilteritinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0390uM
(2R)-2-methyl-2-[[2-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]-N-(2,2,2-trifluoroethyl)butanamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0460uM
N-[5-[(2R)-2-methoxy-2-phenylacetyl]-4,6-dihydro-1H-pyrrolo[3,4-d]pyrazol-3-yl]-4-(4-methylpiperazin-1-yl)benzamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0490uM
4-[4-[(3-tert-butyl-1-quinolin-6-ylpyrazol-5-yl)carbamoylamino]-3-fluorophenoxy]-N-methylpyridine-2-carboxamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0550uM
1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea435833: Binding constant for full-length TNK1kd0.0600uM
Dabrafenib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0660uM
N-[4-[4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]sulfanylphenyl]cyclopropanecarboxamide435833: Binding constant for full-length TNK1kd0.0830uM
Midostaurin435833: Binding constant for full-length TNK1kd0.0830uM
Ponatinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.0840uM
Tofacitinib624930: Binding constant for TNK1 kinase domainkd0.1200uM
(2S)-1-[4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]pyrrolo[2,1-f][1,2,4]triazin-2-yl]-N-(6-fluoro-3-pyridinyl)-2-methylpyrrolidine-2-carboxamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.1520uM
Fostamatinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.1600uM
Axitinib624930: Binding constant for TNK1 kinase domainkd0.1600uM
methyl 2-hydroxy-3-[N-[4-[methyl-[2-(4-methylpiperazin-1-yl)acetyl]amino]phenyl]-C-phenylcarbonimidoyl]-1H-indole-6-carboxylate624930: Binding constant for TNK1 kinase domainkd0.2100uM
methyl (15S,16R,18R)-16-hydroxy-15-methyl-3-oxo-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaene-16-carboxylate1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.2870uM
N-[3-[[2-[4-(4-acetylpiperazin-1-yl)-2-methoxyanilino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.2890uM
Crizotinib624930: Binding constant for TNK1 kinase domainkd0.3200uM
Fedratinib624930: Binding constant for TNK1 kinase domainkd0.3600uM
6-(2,6-dichlorophenyl)-8-methyl-2-(3-methylsulfanylanilino)pyrido[2,3-d]pyrimidin-7-one624930: Binding constant for TNK1 kinase domainkd0.3600uM
N-[2-[4-[[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-11-azatricyclo[6.2.1.02,7]undeca-2(7),3,5-trien-11-yl]-2-oxoethyl]acetamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.3690uM
3-[4-[4-[2-[3-[(dimethylamino)methyl]phenyl]-1H-pyrrolo[2,3-b]pyridin-4-yl]-1-ethylpyrazol-3-yl]phenyl]-1,1-dimethylurea1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.5360uM
5-(3-ethylsulfonylphenyl)-3,8-dimethyl-N-(1-methylpiperidin-4-yl)-9H-pyrido[2,3-b]indole-7-carboxamide1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.5580uM
N-[(2S,3R,4R,6R,18S)-18-hydroxy-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-N-methylbenzamide508114: Binding affinity to TNK1kd0.5700uM
[4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone624930: Binding constant for TNK1 kinase domainkd0.5800uM
Baricitinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.6220uM
Erlotinib435833: Binding constant for full-length TNK1kd0.6300uM
N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide;hydrate1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.6780uM
Sunitinib435833: Binding constant for full-length TNK1kd0.6800uM
Pacritinib1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd0.8880uM
2-[2-ethoxy-4-(4-hydroxypiperidin-1-yl)anilino]-5,11-dimethylpyrimido[4,5-b][1,4]benzodiazepin-6-one2160995: Binding affinity to TNK1 (unknown origin) assessed as dissociation constant by ATP-competition binding assaykd0.8900uM
Pazopanib435833: Binding constant for full-length TNK1kd0.9800uM
2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol624930: Binding constant for TNK1 kinase domainkd1.2000uM
5-chloro-2-N-[(1S)-1-(5-fluoropyrimidin-2-yl)ethyl]-4-N-(5-methyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd1.2640uM
1-[4-[4-amino-6-(methoxymethyl)-7-(morpholin-4-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-5-yl]-2-fluorophenyl]-3-[2-fluoro-5-(trifluoromethyl)phenyl]urea1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd1.2650uM
4-[[9-chloro-7-(2-fluoro-6-methoxyphenyl)-5H-pyrimido[5,4-d][2]benzazepin-2-yl]amino]-2-methoxybenzoic acid1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry.kd1.2700uM

CTD chemical–gene interactions

25 total (human), top 25 by PubMed support.

ChemicalActions (top 5)PubMed papers
aristolochic acid Iincreases expression1
sodium bichromatedecreases expression1
nickel subsulfidedecreases expression1
sodium arseniteincreases abundance, increases expression1
coumarinincreases phosphorylation1
nutlin 3increases expression, affects cotreatment1
ON 01910increases phosphorylation1
licochalcone Bincreases expression1
Resveratrolaffects cotreatment, decreases expression1
Arsenic Trioxidedecreases response to substance1
Leflunomidedecreases expression1
Arsenicincreases abundance, increases expression1
Benzo(a)pyreneaffects methylation1
Calcitriolincreases expression1
Dactinomycinaffects cotreatment, increases expression1
Dichlorodiphenyl Dichloroethylenedecreases expression1
Mustard Gasincreases phosphorylation1
Plant Extractsaffects cotreatment, decreases expression1
Seleniumincreases expression1
Smokedecreases expression1
Valproic Acidincreases methylation1
Metribolonedecreases expression1
Antirheumatic Agentsdecreases expression1
Okadaic Acidincreases expression1
Acrylamideincreases expression1

ChEMBL screening assays

153 unique, capped per target: 153 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1017051BindingBinding affinity to Tnk1Examining the chirality, conformation and selective kinase inhibition of 3-((3R,4R)-4-methyl-3-(methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)piperidin-1-yl)-3-oxopropanenitrile (CP-690,550). — J Med Chem

Cellosaurus cell lines

2 cell lines: 2 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B2J7Abcam HeLa TNK1 KOCancer cell lineFemale
CVCL_TT14HAP1 TNK1 (-)Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.