TNK1
gene geneOn this page
Also known as KOS1
Summary
TNK1 (tyrosine kinase non receptor 1, HGNC:11940) is a protein-coding gene on chromosome 17p13.1, encoding Non-receptor tyrosine-protein kinase TNK1 (Q13470). Involved in negative regulation of cell growth.
The protein encoded by this gene belongs to the tyrosine protein kinase family. Tyrosine protein kinases are important regulators of intracellular signal transduction pathways, mediating cellular proliferation, survival, and development. This gene is highly expressed in fetal tissues and at lower levels in few adult tissues, thus may function in signaling pathways utilized broadly during fetal development, and more selectively in adult tissues. It plays a negative regulatory role in the Ras-Raf1-MAPK pathway, and knockout mice have been shown to develop spontaneous tumors, suggesting a role as a tumor suppressor gene. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 8711 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 129 total
- Druggable target: yes — 49 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_003985
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:11940 |
| Approved symbol | TNK1 |
| Name | tyrosine kinase non receptor 1 |
| Location | 17p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KOS1 |
| Ensembl gene | ENSG00000174292 |
| Ensembl biotype | protein_coding |
| OMIM | 608076 |
| Entrez | 8711 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 4 protein_coding, 3 retained_intron, 2 nonsense_mediated_decay
ENST00000570896, ENST00000574794, ENST00000575268, ENST00000576136, ENST00000576207, ENST00000576716, ENST00000576812, ENST00000577009, ENST00000688331
RefSeq mRNA: 2 — MANE Select: NM_003985
NM_001251902, NM_003985
CCDS: CCDS45602, CCDS58510
Canonical transcript exons
ENST00000639010 — 0 exons
Expression profiles
Bgee: expression breadth ubiquitous, 133 present calls, max score 84.10.
FANTOM5 (CAGE): breadth broad, TPM avg 2.1950 / max 98.1469, expressed in 670 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 159162 | 2.0369 | 594 |
| 159163 | 0.1581 | 71 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 84.10 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 83.34 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 83.33 | gold quality |
| cerebellum | UBERON:0002037 | 83.31 | gold quality |
| cerebellar cortex | UBERON:0002129 | 83.31 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 81.65 | gold quality |
| body of stomach | UBERON:0001161 | 80.87 | gold quality |
| transverse colon | UBERON:0001157 | 80.29 | gold quality |
| skin of leg | UBERON:0001511 | 79.84 | gold quality |
| zone of skin | UBERON:0000014 | 79.69 | gold quality |
| minor salivary gland | UBERON:0001830 | 79.62 | gold quality |
| duodenum | UBERON:0002114 | 79.50 | gold quality |
| skin of abdomen | UBERON:0001416 | 79.47 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 79.20 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 79.18 | gold quality |
| body of pancreas | UBERON:0001150 | 79.16 | gold quality |
| stomach | UBERON:0000945 | 79.02 | gold quality |
| small intestine | UBERON:0002108 | 79.01 | gold quality |
| esophagus mucosa | UBERON:0002469 | 78.95 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 78.31 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 78.28 | gold quality |
| pancreas | UBERON:0001264 | 78.22 | gold quality |
| prostate gland | UBERON:0002367 | 78.08 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 77.79 | gold quality |
| intestine | UBERON:0000160 | 76.86 | gold quality |
| islet of Langerhans | UBERON:0000006 | 76.83 | gold quality |
| colon | UBERON:0001155 | 76.69 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 76.64 | gold quality |
| fundus of stomach | UBERON:0001160 | 76.56 | gold quality |
| metanephros cortex | UBERON:0010533 | 76.56 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.28 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SP1, SP3, TFAP2A
miRNA regulators (miRDB)
28 targeting TNK1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-548AU-3P | 99.70 | 68.22 | 1373 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-646 | 99.68 | 67.84 | 1645 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
| HSA-MIR-7106-5P | 99.53 | 67.47 | 3574 |
| HSA-MIR-3171 | 99.49 | 69.06 | 776 |
| HSA-MIR-297 | 99.40 | 69.58 | 1418 |
| HSA-MIR-4520-2-3P | 99.14 | 69.28 | 1009 |
| HSA-MIR-6852-3P | 98.54 | 67.60 | 1468 |
| HSA-MIR-224-5P | 98.33 | 70.12 | 1256 |
| HSA-MIR-7850-5P | 98.12 | 67.28 | 1111 |
| HSA-MIR-3691-3P | 97.90 | 65.97 | 791 |
| HSA-MIR-10526-3P | 97.86 | 64.97 | 1342 |
| HSA-MIR-6783-5P | 97.67 | 67.21 | 1528 |
| HSA-MIR-663B | 97.40 | 62.91 | 664 |
| HSA-MIR-3173-5P | 97.35 | 65.82 | 1282 |
| HSA-MIR-6799-3P | 97.35 | 65.60 | 1302 |
| HSA-MIR-4776-5P | 97.14 | 66.63 | 405 |
Literature-anchored findings (GeneRIF, showing 11)
- TNK1 therefore acts as a novel molecular switch that can determine the properties of TNFalpha signaling and therefore cell death. (PMID:17471239)
- Activated Tnk1 kinase is associated with Hodgkin’s lymphoma. (PMID:20090780)
- The application of functional genomics by using high-throughput-RNAi screens has allowed us to identify TNK1 as a growth-associated kinase in pancreatic cancer cells. (PMID:21536687)
- The activated TNK1 potentiates JAK-STAT signaling through dual phosphorylation of STAT1 at tyrosine 701 and serine 727 amino acid positions. (PMID:24449862)
- the Single nucleotide polymorphisms rs11136000 of CLU, rs541458 of PICALM, and rs1554948 of TNK1 according to the three age groups 50-65 years (group 1), 66-80 years (group 2), and 80+ years (group 3) in 569 older subjects without cognitive impairment (NoCI) and 520 Alzheimer’s disease (AD) patients, were studied. (PMID:28631188)
- TNK1 was found to be deregulated in the gut in murine and porcine trauma models and human inflammatory bowel disease. Thus, TNK1 might be a target during MODS to prevent damage in several organs, notably the gut. (PMID:30320600)
- Thirty-Eight-Negative Kinase 1 Is a Mediator of Acute Kidney Injury in Experimental and Clinical Traumatic Hemorrhagic Shock. (PMID:32983160)
- Polymorphism rs11867353 of Tyrosine Kinase Non-Receptor 1 (TNK1) Gene Is a Novel Genetic Marker for Alzheimer’s Disease. (PMID:33070267)
- TNK1 is a ubiquitin-binding and 14-3-3-regulated kinase that can be targeted to block tumor growth. (PMID:34504101)
- The noncatalytic regions of the tyrosine kinase Tnk1 are important for activity and substrate specificity. (PMID:36334623)
- Fusion crystallization reveals the behavior of both the 1TEL crystallization chaperone and the TNK1 UBA domain. (PMID:37776857)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Tnk1 | ENSMUSG00000001583 |
| rattus_norvegicus | Tnk1 | ENSRNOG00000015578 |
Paralogs (32): FGR (ENSG00000000938), MATK (ENSG00000007264), BTK (ENSG00000010671), FYN (ENSG00000010810), STYK1 (ENSG00000060140), TNK2 (ENSG00000061938), TXK (ENSG00000074966), JAK2 (ENSG00000096968), ABL1 (ENSG00000097007), PTK6 (ENSG00000101213), HCK (ENSG00000101336), BMX (ENSG00000102010), CSK (ENSG00000103653), TYK2 (ENSG00000105397), JAK3 (ENSG00000105639), FRK (ENSG00000111816), ITK (ENSG00000113263), ZAP70 (ENSG00000115085), PTK2B (ENSG00000120899), SRMS (ENSG00000125508), TEC (ENSG00000135605), BLK (ENSG00000136573), ABL2 (ENSG00000143322), FER (ENSG00000151422), JAK1 (ENSG00000162434), SYK (ENSG00000165025), PTK2 (ENSG00000169398), YES1 (ENSG00000176105), FES (ENSG00000182511), LCK (ENSG00000182866), SRC (ENSG00000197122), LYN (ENSG00000254087)
Protein
Protein identifiers
Non-receptor tyrosine-protein kinase TNK1 — Q13470 (reviewed: Q13470)
Alternative names: CD38 negative kinase 1
All UniProt accessions (3): Q13470, I3L334, U3KPR9
UniProt curated annotations — full annotation on UniProt →
Function. Involved in negative regulation of cell growth. Has tumor suppressor properties. Plays a negative regulatory role in the Ras-MAPK pathway. May function in signaling pathways utilized broadly during fetal development and more selectively in adult tissues and in cells of the lymphohematopoietic system. Could specifically be involved in phospholipid signal transduction.
Subunit / interactions. Interacts with the SH3 domain of PLCG1 via its Pro-rich domain.
Subcellular location. Cytoplasm. Membrane.
Tissue specificity. Expressed in all umbilical cord blood, bone marrow and adult blood cell sub-populations and in several leukemia cell lines. Highly expressed in fetal blood, brain, lung, liver and kidney. Detected at lower levels in adult prostate, testis, ovary, small intestine and colon. Not expressed in adult lung, liver, kidney or brain.
Post-translational modifications. Autophosphorylated on tyrosine residues.
Similarity. Belongs to the protein kinase superfamily. Tyr protein kinase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13470-1 | 1 | yes |
| Q13470-2 | 2 |
RefSeq proteins (2): NP_001238831, NP_003976* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001245 | Ser-Thr/Tyr_kinase_cat_dom | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR020635 | Tyr_kinase_cat_dom | Domain |
| IPR049587 | TNK-like_SAM | Domain |
| IPR050198 | Non-receptor_tyrosine_kinases | Family |
| IPR055175 | ACK/TNK-like_SAM | Domain |
Pfam: PF07714, PF22931
Catalyzed reactions (Rhea), 1 shown:
- L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+) (RHEA:10596)
UniProt features (48 total): sequence conflict 15, modified residue 8, sequence variant 6, helix 5, domain 2, region of interest 2, turn 2, compositionally biased region 2, binding site 2, chain 1, splice variant 1, strand 1, active site 1
Structure
Experimental structures (PDB)
10 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7TDY | X-RAY DIFFRACTION | 1.53 |
| 7TCY | X-RAY DIFFRACTION | 1.54 |
| 7T8J | X-RAY DIFFRACTION | 1.89 |
| 9ZVU | X-RAY DIFFRACTION | 1.96 |
| 9NGE | X-RAY DIFFRACTION | 2.02 |
| 9Z2L | X-RAY DIFFRACTION | 2.02 |
| 7U4Z | X-RAY DIFFRACTION | 2.03 |
| 7U4W | X-RAY DIFFRACTION | 2.1 |
| 9O0H | X-RAY DIFFRACTION | 2.24 |
| 9CPL | X-RAY DIFFRACTION | 2.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13470-F1 | 73.01 | 0.41 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 245 (proton acceptor)
Ligand- & substrate-binding residues (2): 122–130; 148
Post-translational modifications (8): 60, 96, 255, 502, 514, 519, 582, 411
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 82 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, MORF_RAD51L3, MODULE_120, MORF_CTSB, MORF_IL4, MODULE_99, MORF_THPO, MODULE_175, HAN_SATB1_TARGETS_DN, RGAGGAARY_PU1_Q6, MORF_ATF2, GOBP_PROTEIN_AUTOPHOSPHORYLATION, GOMF_PROTEIN_KINASE_ACTIVITY, GOMF_KINASE_ACTIVITY, MORF_PAX7
GO Biological Process (2): protein phosphorylation (GO:0006468), protein autophosphorylation (GO:0046777)
GO Molecular Function (8): protein tyrosine kinase activity (GO:0004713), non-membrane spanning protein tyrosine kinase activity (GO:0004715), ATP binding (GO:0005524), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740)
GO Cellular Component (3): cytoplasm (GO:0005737), plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| phosphorylation | 1 |
| protein modification process | 1 |
| protein phosphorylation | 1 |
| protein kinase activity | 1 |
| protein tyrosine kinase activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| catalytic activity | 1 |
| intracellular anatomical structure | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
466 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TNK1 | CD38 | P28907 | 690 |
| TNK1 | PGBD1 | Q96JS3 | 573 |
| TNK1 | TNKS | O95271 | 537 |
| TNK1 | EXOC3L2 | Q2M3D2 | 507 |
| TNK1 | GALP | Q9UBC7 | 487 |
| TNK1 | SH3BP2 | P78314 | 451 |
| TNK1 | SH3BP5 | O60239 | 408 |
| TNK1 | PICALM | Q13492 | 393 |
| TNK1 | SORL1 | Q92673 | 366 |
| TNK1 | SH3RF3 | Q8TEJ3 | 353 |
| TNK1 | GAB2 | Q9UQC2 | 350 |
| TNK1 | SORCS1 | Q8WY21 | 324 |
| TNK1 | MYH13 | Q9UKX3 | 313 |
| TNK1 | CLU | P10909 | 311 |
| TNK1 | GAK | O14976 | 305 |
IntAct
32 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SFN | TNK1 | psi-mi:“MI:0915”(physical association) | 0.690 |
| TNK1 | SFN | psi-mi:“MI:0915”(physical association) | 0.690 |
| YWHAE | TNK1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| ZNRD2 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
| TNK1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| HSP90AB1 | TNK1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TNK1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| TNK1 | CDC37 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TNK1 | DDX5 | psi-mi:“MI:0914”(association) | 0.350 |
| JUN | psi-mi:“MI:0914”(association) | 0.350 | |
| PLK4 | psi-mi:“MI:0914”(association) | 0.350 | |
| CAMK2B | psi-mi:“MI:0914”(association) | 0.350 | |
| GAK | psi-mi:“MI:0914”(association) | 0.350 | |
| CDK1 | psi-mi:“MI:0914”(association) | 0.350 | |
| AURKA | psi-mi:“MI:0914”(association) | 0.350 | |
| SGK1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TBKBP1 | psi-mi:“MI:0914”(association) | 0.350 | |
| AHRR | psi-mi:“MI:0914”(association) | 0.350 | |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| TNK1 | ACP1 | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-C | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (57): DDX5 (Affinity Capture-MS), ILF3 (Affinity Capture-MS), SFN (Affinity Capture-MS), YWHAB (Affinity Capture-MS), YWHAE (Affinity Capture-MS), YWHAG (Affinity Capture-MS), YWHAH (Affinity Capture-MS), YWHAQ (Affinity Capture-MS), YWHAZ (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS), TNK1 (Affinity Capture-MS)
ESM2 similar proteins: A0A061IR73, A0A7N9VSG0, A7YSY2, D3KCC4, D3ZU57, D4A2B7, O08644, O15197, O19179, O43542, O75064, O95382, P0C0K6, P0C0K7, P51840, P52785, P52824, P54777, Q02846, Q05932, Q13470, Q13608, Q1HG60, Q3ZBE0, Q4KM32, Q5JZY3, Q643R3, Q6MG64, Q6NVG1, Q6ZPS2, Q76MJ5, Q7TNJ2, Q80SX8, Q8BYG9, Q8IZY2, Q8NFF5, Q8R5G7, Q8TDZ2, Q8WWN8, Q91V24
Diamond homologs: F1N9Y5, F1RDG9, G5EBZ8, G5EE56, O02466, O18735, O45539, O54967, P00519, P00520, P00521, P00522, P00525, P00526, P00528, P00533, P00534, P00535, P03949, P04412, P04626, P06239, P06240, P06494, P07948, P08103, P08630, P08631, P0CY46, P10447, P11273, P15209, P17713, P24786, P25911, P27446, P29317, P42679, P42680, P42681
SIGNOR signaling
7 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TNK1 | “up-regulates quantity” | PLCG1 | binding |
| MARK4 | “down-regulates activity” | TNK1 | phosphorylation |
| MARK1 | “down-regulates activity” | TNK1 | phosphorylation |
| MARK2 | “down-regulates activity” | TNK1 | phosphorylation |
| MARK3 | “down-regulates activity” | TNK1 | phosphorylation |
| 14-3-3 | “down-regulates activity” | TNK1 | binding |
| TNK1 | “up-regulates activity” | TNK1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 20 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Transcriptional Regulation by TP53 | 6 | 23.3× | 4e-05 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
129 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 87 |
| Likely benign | 12 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2147 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:7383613:GAGT:G | donor_gain | 1.0000 |
| 17:7383615:GT:G | donor_gain | 1.0000 |
| 17:7383861:GATG:G | donor_gain | 1.0000 |
| 17:7386560:GGCC:G | acceptor_gain | 1.0000 |
| 17:7386988:A:AG | acceptor_gain | 1.0000 |
| 17:7386989:G:GG | acceptor_gain | 1.0000 |
| 17:7386989:GCCCC:G | acceptor_gain | 1.0000 |
| 17:7387142:G:GT | donor_gain | 1.0000 |
| 17:7387150:GATGG:G | donor_gain | 1.0000 |
| 17:7387151:A:G | donor_gain | 1.0000 |
| 17:7388783:CACA:C | acceptor_loss | 1.0000 |
| 17:7388785:CA:C | acceptor_loss | 1.0000 |
| 17:7388786:A:AG | acceptor_gain | 1.0000 |
| 17:7388786:AGGT:A | acceptor_gain | 1.0000 |
| 17:7388787:G:GC | acceptor_loss | 1.0000 |
| 17:7388787:G:GG | acceptor_gain | 1.0000 |
| 17:7388787:GGT:G | acceptor_gain | 1.0000 |
| 17:7388787:GGTG:G | acceptor_gain | 1.0000 |
| 17:7388880:CAAG:C | donor_loss | 1.0000 |
| 17:7388882:AGGTA:A | donor_loss | 1.0000 |
| 17:7388885:T:A | donor_loss | 1.0000 |
| 17:7383612:AGAGT:A | donor_gain | 0.9900 |
| 17:7383613:GAGTG:G | donor_gain | 0.9900 |
| 17:7383617:G:GG | donor_gain | 0.9900 |
| 17:7383705:CCA:C | acceptor_loss | 0.9900 |
| 17:7383706:CAG:C | acceptor_loss | 0.9900 |
| 17:7383708:G:A | acceptor_loss | 0.9900 |
| 17:7383862:ATGG:A | donor_loss | 0.9900 |
| 17:7383863:TGGTG:T | donor_loss | 0.9900 |
| 17:7383866:T:A | donor_loss | 0.9900 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000533068 (17:7388340 G>A), RS1000547127 (17:7387289 G>A), RS1000562666 (17:7386051 T>G), RS1000641794 (17:7387011 G>A), RS1002262081 (17:7384552 C>G), RS1002356948 (17:7384232 C>G), RS1002471812 (17:7389776 A>C), RS1002665972 (17:7384897 C>T), RS1003200525 (17:7379341 T>C), RS1003202464 (17:7379489 G>A,C), RS1003476 (17:7386013 C>T), RS1003477 (17:7385941 C>A), RS1003522330 (17:7383947 C>G,T), RS1003621893 (17:7379107 C>T), RS1003805088 (17:7389178 G>A)
Disease associations
OMIM: gene MIM:608076 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5334 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
49 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 400,916 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1171837 | PONATINIB | 4 | 8,955 |
| CHEMBL1287853 | FEDRATINIB | 4 | 3,554 |
| CHEMBL1289926 | AXITINIB | 4 | 15,732 |
| CHEMBL1336 | SORAFENIB | 4 | 86,060 |
| CHEMBL1983268 | ENTRECTINIB | 4 | 3,510 |
| CHEMBL2028663 | DABRAFENIB | 4 | 12,430 |
| CHEMBL2035187 | PACRITINIB | 4 | 3,345 |
| CHEMBL2103743 | TOFACITINIB CITRATE | 4 | 1,672 |
| CHEMBL2103830 | FOSTAMATINIB | 4 | 3,841 |
| CHEMBL2105759 | BARICITINIB | 4 | 6,741 |
| CHEMBL221959 | TOFACITINIB | 4 | 10,408 |
| CHEMBL2403108 | CERITINIB | 4 | 8,551 |
| CHEMBL3301622 | GILTERITINIB | 4 | 2,395 |
| CHEMBL477772 | PAZOPANIB | 4 | 15,540 |
| CHEMBL502835 | NINTEDANIB | 4 | 8,545 |
| CHEMBL535 | SUNITINIB | 4 | 79,020 |
| CHEMBL5416410 | DASATINIB | 4 | 655 |
| CHEMBL553 | ERLOTINIB | 4 | 108,300 |
| CHEMBL601719 | CRIZOTINIB | 4 | 14,403 |
| CHEMBL608533 | MIDOSTAURIN | 4 | 7,259 |
| CHEMBL300138 | ENZASTAURIN | 3 | |
| CHEMBL3137331 | DEFACTINIB | 3 | |
| CHEMBL3545154 | POZIOTINIB | 3 | |
| CHEMBL3545308 | ROCILETINIB | 3 | |
| CHEMBL483158 | ALISERTIB | 3 | |
| CHEMBL603469 | LESTAURTINIB | 3 | |
| CHEMBL1230609 | FORETINIB | 2 | |
| CHEMBL1231124 | AZD-1480 | 2 | |
| CHEMBL1721885 | SU-014813 | 2 | |
| CHEMBL1738757 | REBASTINIB | 2 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Ack family
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| xiliertinib | Inhibition | 6.59 | pIC50 |
| XMD8-92 | Inhibition | 6.05 | pKd |
Binding affinities (BindingDB)
12 measured of 12 human assays (12 total across all organisms); most potent 12 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| Staurosporine | KD | 1.7 nM | |
| PKC-412 | KD | 190 nM | |
| 4-[[7-[2,6-bis(fluoranyl)phenyl]-9-chloranyl-5H-pyrimido[5,4-d][2]benzazepin-2-yl]amino]benzoic acid | KD | 300 nM | |
| 4-[4-({[4-chloro-3-(trifluoromethyl)phenyl]carbamoyl}amino)phenoxy]-N-methylpyridine-2-carboxamide | KD | 370 nM | |
| N-[4-({4-[(3-methyl-1H-pyrazol-5-yl)amino]-6-(4-methylpiperazin-1-yl)pyrimidin-2-yl}sulfanyl)phenyl]cyclopropanecarboxamide | KD | 1100 nM | |
| ERLOTINIB HYDROCHLORIDE | KD | 1200 nM | |
| 1-[4-[(4-ethyl-1-piperazinyl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[[6-(methylamino)-4-pyrimidinyl]oxy]phenyl]urea | KD | 1400 nM | |
| 5-[(Z)-(5-fluoranyl-2-oxidanylidene-1H-indol-3-ylidene)methyl]-2,4-dimethyl-N-[(2S)-3-morpholin-4-yl-2-oxidanyl-propyl]-1H-pyrrole-3-carboxamide | KD | 2600 nM | |
| 1-Acyl-1H-[1,2,4]triazole-3,5-diamine Analogue 3b | KD | 3100 nM | |
| N-[2-(diethylamino)ethyl]-5-[(Z)-(5-fluoro-2-oxo-1,2-dihydro-3H-indol-3-ylidene)methyl]-2,4-dimethyl-1H-pyrrole-3-carboxamide | KD | 3500 nM | |
| 13-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]anilino]-2,5,9-trimethyl-4-thia-2,6,9,12,14-pentazatricyclo[8.4.0.03,7]tetradeca-1(14),3(7),5,10,12-pentaen-8-one | IC50 | 3610 nM | US-12365696: Small-molecule focal adhesion kinase (FAK) inhibitors |
| 3-((3R,4R)-4-methyl-3-(methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)piperidin-1-yl)-3-oxopropanenitrile | KD | 5000 nM |
ChEMBL bioactivities
205 potent at pChembl≥5 of 208 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.23 | IC50 | 0.584 | nM | STAUROSPORINE |
| 8.87 | IC50 | 1.34 | nM | STAUROSPORINE |
| 8.86 | IC50 | 1.37 | nM | CHEMBL5772004 |
| 8.74 | Kd | 1.8 | nM | TAE-684 |
| 8.73 | IC50 | 1.84 | nM | STAUROSPORINE |
| 8.60 | Kd | 2.5 | nM | STAUROSPORINE |
| 8.56 | IC50 | 2.77 | nM | CHEMBL5756581 |
| 8.52 | Kd | 3 | nM | XL-228 |
| 8.48 | IC50 | 3.33 | nM | CHEMBL5853387 |
| 8.47 | IC50 | 3.36 | nM | CHEMBL6022678 |
| 8.45 | IC50 | 3.59 | nM | CHEMBL6058132 |
| 8.41 | IC50 | 3.92 | nM | CHEMBL5993654 |
| 8.40 | Kd | 4 | nM | CHEMBL4465866 |
| 8.39 | IC50 | 4.04 | nM | CHEMBL5822783 |
| 8.38 | IC50 | 4.15 | nM | CHEMBL5758369 |
| 8.36 | IC50 | 4.42 | nM | CHEMBL5955353 |
| 8.30 | IC50 | 4.96 | nM | CHEMBL5863835 |
| 8.30 | IC50 | 5 | nM | CHEMBL6054797 |
| 8.29 | IC50 | 5.07 | nM | NESUPARIB |
| 8.26 | IC50 | 5.56 | nM | CHEMBL5795408 |
| 8.25 | IC50 | 5.59 | nM | CHEMBL5924751 |
| 8.24 | IC50 | 5.77 | nM | CHEMBL5968204 |
| 8.23 | IC50 | 5.82 | nM | CHEMBL5772340 |
| 8.22 | Kd | 6 | nM | MK-5108 |
| 8.20 | IC50 | 6.29 | nM | CHEMBL5851052 |
| 8.17 | IC50 | 6.77 | nM | CHEMBL5932989 |
| 8.14 | IC50 | 7.28 | nM | CHEMBL5989650 |
| 8.09 | IC50 | 8.05 | nM | CHEMBL5879210 |
| 8.07 | IC50 | 8.46 | nM | CHEMBL5758790 |
| 8.05 | IC50 | 8.81 | nM | CHEMBL5785121 |
| 8.03 | Kd | 9.3 | nM | LESTAURTINIB |
| 8.02 | IC50 | 9.65 | nM | CHEMBL6001595 |
| 8.01 | IC50 | 9.89 | nM | CHEMBL5750491 |
| 7.99 | IC50 | 10.2 | nM | CHEMBL6013549 |
| 7.98 | IC50 | 10.4 | nM | CHEMBL5954322 |
| 7.98 | IC50 | 10.4 | nM | CHEMBL5949390 |
| 7.97 | IC50 | 10.7 | nM | CHEMBL5788476 |
| 7.97 | IC50 | 10.6 | nM | CHEMBL6015205 |
| 7.97 | IC50 | 10.7 | nM | CHEMBL6064240 |
| 7.96 | IC50 | 11 | nM | CHEMBL5997953 |
| 7.95 | IC50 | 11.3 | nM | CHEMBL5869375 |
| 7.94 | IC50 | 11.4 | nM | CHEMBL6032977 |
| 7.94 | IC50 | 11.4 | nM | CHEMBL5981093 |
| 7.94 | IC50 | 11.4 | nM | CHEMBL5958241 |
| 7.94 | IC50 | 11.6 | nM | CHEMBL6056405 |
| 7.93 | IC50 | 11.8 | nM | CHEMBL5985547 |
| 7.92 | IC50 | 12.1 | nM | CHEMBL5921357 |
| 7.91 | IC50 | 12.4 | nM | CHEMBL5890554 |
| 7.90 | IC50 | 12.5 | nM | CHEMBL6023648 |
| 7.90 | IC50 | 12.6 | nM | CHEMBL6060400 |
PubChem BioAssay actives
93 with measured affinity, of 526 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2S,3R,4R,6R)-3-methoxy-2-methyl-4-(methylamino)-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-16-one | 1531911: Inhibition of human TNK1 using poly[Glu:Tyr] (4:1) as substrate by [gamma-33P]-ATP assay | ic50 | 0.0006 | uM |
| 5-chloro-2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)pyrimidine-2,4-diamine | 624930: Binding constant for TNK1 kinase domain | kd | 0.0018 | uM |
| 4-N-(5-cyclopropyl-1H-pyrazol-3-yl)-6-(4-methylpiperazin-1-yl)-2-N-[(3-propan-2-yl-1,2-oxazol-5-yl)methyl]pyrimidine-2,4-diamine | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0030 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]amino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526152: Binding affinity to recombinant human N-terminal GST-tagged TNK1 (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate incubated for 1 hr by TR-FRET assay | kd | 0.0040 | uM |
| (15S,16S,18R)-16-hydroxy-16-(hydroxymethyl)-15-methyl-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaen-3-one | 508114: Binding affinity to TNK1 | kd | 0.0093 | uM |
| 3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)-N-[2-[2-[2-[2-[[(2S,3R,4R,6R)-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-methylamino]ethoxy]ethoxy]ethoxy]ethyl]propanamide | 1526152: Binding affinity to recombinant human N-terminal GST-tagged TNK1 (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate incubated for 1 hr by TR-FRET assay | kd | 0.0130 | uM |
| 2,6-difluoro-N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]benzenesulfonamide | 1573275: Binding affinity to TNK1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assay | kd | 0.0140 | uM |
| N-[3-[2-[2-ethoxy-4-(4-methylpiperazin-1-yl)anilino]-7-oxo-8-[[(2R)-oxolan-2-yl]methyl]pyrido[2,3-d]pyrimidin-6-yl]phenyl]-3-(trifluoromethyl)benzamide | 1988555: Binding affinity to TNK1 (unknown origin) assessed as dissociation constant by KINOME scan assay | kd | 0.0150 | uM |
| 1-N’-[3-fluoro-4-[6-methoxy-7-(3-morpholin-4-ylpropoxy)quinolin-4-yl]oxyphenyl]-1-N-(4-fluorophenyl)cyclopropane-1,1-dicarboxamide | 624930: Binding constant for TNK1 kinase domain | kd | 0.0210 | uM |
| 2,5-difluoro-N-[3-fluoro-4-[6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinolin-4-yl]oxyphenyl]benzenesulfonamide | 1573275: Binding affinity to TNK1 in SILAC-labeled human MDA-MB-231 cells lysate by mass spectrometry based kinAffinity assay | kd | 0.0240 | uM |
| 6-[[5-fluoro-2-(3,4,5-trimethoxyanilino)pyrimidin-4-yl]amino]-2,2-dimethyl-4H-pyrido[3,2-b][1,4]oxazin-3-one | 624930: Binding constant for TNK1 kinase domain | kd | 0.0250 | uM |
| 2-N-[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]-4-N-(2-propan-2-ylsulfonylphenyl)-1,3,5-triazine-2,4-diamine | 2161838: Inhibition of human N-terminal GST-fused TNK1 isoform 2 catalytic domain (106 to 390 residues) expressed in baculovirus expression system using CSKtide as substrate measured after 5 hrs by off-chip mobility shift assay relative to control | ic50 | 0.0268 | uM |
| Ceritinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0270 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149625: Binding affinity to human TNK1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0277 | uM |
| 2-[2-methoxy-4-(4-methylpiperazin-1-yl)anilino]-5,11-dimethylpyrimido[4,5-b][1,4]benzodiazepin-6-one | 570548: Binding affinity to TNK1 by immobilized ligand displacement assay | kd | 0.0290 | uM |
| Gilteritinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0390 | uM |
| (2R)-2-methyl-2-[[2-(1H-pyrrolo[2,3-b]pyridin-3-yl)pyrimidin-4-yl]amino]-N-(2,2,2-trifluoroethyl)butanamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0460 | uM |
| N-[5-[(2R)-2-methoxy-2-phenylacetyl]-4,6-dihydro-1H-pyrrolo[3,4-d]pyrazol-3-yl]-4-(4-methylpiperazin-1-yl)benzamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0490 | uM |
| 4-[4-[(3-tert-butyl-1-quinolin-6-ylpyrazol-5-yl)carbamoylamino]-3-fluorophenoxy]-N-methylpyridine-2-carboxamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0550 | uM |
| 1-[4-[(4-ethylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl]-3-[4-[6-(methylamino)pyrimidin-4-yl]oxyphenyl]urea | 435833: Binding constant for full-length TNK1 | kd | 0.0600 | uM |
| Dabrafenib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0660 | uM |
| N-[4-[4-(4-methylpiperazin-1-yl)-6-[(5-methyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]sulfanylphenyl]cyclopropanecarboxamide | 435833: Binding constant for full-length TNK1 | kd | 0.0830 | uM |
| Midostaurin | 435833: Binding constant for full-length TNK1 | kd | 0.0830 | uM |
| Ponatinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.0840 | uM |
| Tofacitinib | 624930: Binding constant for TNK1 kinase domain | kd | 0.1200 | uM |
| (2S)-1-[4-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]pyrrolo[2,1-f][1,2,4]triazin-2-yl]-N-(6-fluoro-3-pyridinyl)-2-methylpyrrolidine-2-carboxamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.1520 | uM |
| Fostamatinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.1600 | uM |
| Axitinib | 624930: Binding constant for TNK1 kinase domain | kd | 0.1600 | uM |
| methyl 2-hydroxy-3-[N-[4-[methyl-[2-(4-methylpiperazin-1-yl)acetyl]amino]phenyl]-C-phenylcarbonimidoyl]-1H-indole-6-carboxylate | 624930: Binding constant for TNK1 kinase domain | kd | 0.2100 | uM |
| methyl (15S,16R,18R)-16-hydroxy-15-methyl-3-oxo-28-oxa-4,14,19-triazaoctacyclo[12.11.2.115,18.02,6.07,27.08,13.019,26.020,25]octacosa-1,6,8,10,12,20,22,24,26-nonaene-16-carboxylate | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.2870 | uM |
| N-[3-[[2-[4-(4-acetylpiperazin-1-yl)-2-methoxyanilino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.2890 | uM |
| Crizotinib | 624930: Binding constant for TNK1 kinase domain | kd | 0.3200 | uM |
| Fedratinib | 624930: Binding constant for TNK1 kinase domain | kd | 0.3600 | uM |
| 6-(2,6-dichlorophenyl)-8-methyl-2-(3-methylsulfanylanilino)pyrido[2,3-d]pyrimidin-7-one | 624930: Binding constant for TNK1 kinase domain | kd | 0.3600 | uM |
| N-[2-[4-[[4-(cyclobutylamino)-5-(trifluoromethyl)pyrimidin-2-yl]amino]-11-azatricyclo[6.2.1.02,7]undeca-2(7),3,5-trien-11-yl]-2-oxoethyl]acetamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.3690 | uM |
| 3-[4-[4-[2-[3-[(dimethylamino)methyl]phenyl]-1H-pyrrolo[2,3-b]pyridin-4-yl]-1-ethylpyrazol-3-yl]phenyl]-1,1-dimethylurea | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.5360 | uM |
| 5-(3-ethylsulfonylphenyl)-3,8-dimethyl-N-(1-methylpiperidin-4-yl)-9H-pyrido[2,3-b]indole-7-carboxamide | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.5580 | uM |
| N-[(2S,3R,4R,6R,18S)-18-hydroxy-3-methoxy-2-methyl-16-oxo-29-oxa-1,7,17-triazaoctacyclo[12.12.2.12,6.07,28.08,13.015,19.020,27.021,26]nonacosa-8,10,12,14,19,21,23,25,27-nonaen-4-yl]-N-methylbenzamide | 508114: Binding affinity to TNK1 | kd | 0.5700 | uM |
| [4-[(E)-2-(1H-indazol-3-yl)ethenyl]phenyl]-piperazin-1-ylmethanone | 624930: Binding constant for TNK1 kinase domain | kd | 0.5800 | uM |
| Baricitinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.6220 | uM |
| Erlotinib | 435833: Binding constant for full-length TNK1 | kd | 0.6300 | uM |
| N-(2-chloro-6-methylphenyl)-2-[[6-[4-(2-hydroxyethyl)piperazin-1-yl]-2-methylpyrimidin-4-yl]amino]-1,3-thiazole-5-carboxamide;hydrate | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.6780 | uM |
| Sunitinib | 435833: Binding constant for full-length TNK1 | kd | 0.6800 | uM |
| Pacritinib | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 0.8880 | uM |
| 2-[2-ethoxy-4-(4-hydroxypiperidin-1-yl)anilino]-5,11-dimethylpyrimido[4,5-b][1,4]benzodiazepin-6-one | 2160995: Binding affinity to TNK1 (unknown origin) assessed as dissociation constant by ATP-competition binding assay | kd | 0.8900 | uM |
| Pazopanib | 435833: Binding constant for full-length TNK1 | kd | 0.9800 | uM |
| 2-(4-amino-1-propan-2-ylpyrazolo[3,4-d]pyrimidin-3-yl)-1H-indol-5-ol | 624930: Binding constant for TNK1 kinase domain | kd | 1.2000 | uM |
| 5-chloro-2-N-[(1S)-1-(5-fluoropyrimidin-2-yl)ethyl]-4-N-(5-methyl-1H-pyrazol-3-yl)pyrimidine-2,4-diamine | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 1.2640 | uM |
| 1-[4-[4-amino-6-(methoxymethyl)-7-(morpholin-4-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-5-yl]-2-fluorophenyl]-3-[2-fluoro-5-(trifluoromethyl)phenyl]urea | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 1.2650 | uM |
| 4-[[9-chloro-7-(2-fluoro-6-methoxyphenyl)-5H-pyrimido[5,4-d][2]benzazepin-2-yl]amino]-2-methoxybenzoic acid | 1425200: Kinobeads (epsilon), multiple immobilized ATP-competitive broad spectrum kinase inhibitors, used to assess residual binding of ~300 proteins simultaneously from cell lysate in the presence of a compound. Quantitative readout performed by mass spectrometry. | kd | 1.2700 | uM |
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| aristolochic acid I | increases expression | 1 |
| sodium bichromate | decreases expression | 1 |
| nickel subsulfide | decreases expression | 1 |
| sodium arsenite | increases abundance, increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| nutlin 3 | increases expression, affects cotreatment | 1 |
| ON 01910 | increases phosphorylation | 1 |
| licochalcone B | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | decreases response to substance | 1 |
| Leflunomide | decreases expression | 1 |
| Arsenic | increases abundance, increases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Calcitriol | increases expression | 1 |
| Dactinomycin | affects cotreatment, increases expression | 1 |
| Dichlorodiphenyl Dichloroethylene | decreases expression | 1 |
| Mustard Gas | increases phosphorylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Selenium | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Metribolone | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Acrylamide | increases expression | 1 |
ChEMBL screening assays
153 unique, capped per target: 153 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1017051 | Binding | Binding affinity to Tnk1 | Examining the chirality, conformation and selective kinase inhibition of 3-((3R,4R)-4-methyl-3-(methyl(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino)piperidin-1-yl)-3-oxopropanenitrile (CP-690,550). — J Med Chem |
Cellosaurus cell lines
2 cell lines: 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B2J7 | Abcam HeLa TNK1 KO | Cancer cell line | Female |
| CVCL_TT14 | HAP1 TNK1 (-) | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.