TNPO1
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Also known as MIPTRNIPO2MIP1
Summary
TNPO1 (transportin 1, HGNC:6401) is a protein-coding gene on chromosome 5q13.2, encoding Transportin-1 (Q92973). Functions in nuclear protein import as nuclear transport receptor. It is a selective cancer dependency (DepMap: 31.9% of cell lines).
This gene encodes the beta subunit of the karyopherin receptor complex which interacts with nuclear localization signals to target nuclear proteins to the nucleus. The karyopherin receptor complex is a heterodimer of an alpha subunit which recognizes the nuclear localization signal and a beta subunit which docks the complex at nucleoporins. Alternate splicing of this gene results in several transcript variants encoding different proteins.
Source: NCBI Gene 3842 — RefSeq curated summary.
At a glance
- Gene–disease (curated): cataract 15 multiple types (Definitive, GenCC) — +7 more curated relationships
- GWAS associations: 28
- Clinical variants (ClinVar): 227 total — 15 pathogenic, 7 likely-pathogenic
- Phenotypes (HPO): 1
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 31.9% of screened cell lines
- MANE Select transcript:
NM_002270
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:6401 |
| Approved symbol | TNPO1 |
| Name | transportin 1 |
| Location | 5q13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MIP, TRN, IPO2, MIP1 |
| Ensembl gene | ENSG00000083312 |
| Ensembl biotype | protein_coding |
| OMIM | 602901 |
| Entrez | 3842 |
Gene structure
Transcript identifiers
Ensembl transcripts: 25 — 12 protein_coding, 8 protein_coding_CDS_not_defined, 3 nonsense_mediated_decay, 2 retained_intron
ENST00000337273, ENST00000503084, ENST00000505082, ENST00000506351, ENST00000506528, ENST00000508762, ENST00000509030, ENST00000511754, ENST00000513944, ENST00000515483, ENST00000518279, ENST00000520850, ENST00000523768, ENST00000605210, ENST00000679378, ENST00000680025, ENST00000680111, ENST00000680533, ENST00000681711, ENST00000895477, ENST00000895478, ENST00000895479, ENST00000895480, ENST00000895481, ENST00000944758
RefSeq mRNA: 7 — MANE Select: NM_002270
NM_001364292, NM_001364293, NM_001364294, NM_001364295, NM_001364296, NM_002270, NM_153188
CCDS: CCDS4016, CCDS43329, CCDS93732, CCDS93733
Canonical transcript exons
ENST00000337273 — 25 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000752440 | 72865596 | 72865729 |
| ENSE00001925200 | 72908709 | 72914388 |
| ENSE00002212634 | 72893139 | 72893246 |
| ENSE00002222197 | 72887070 | 72887222 |
| ENSE00002231362 | 72888078 | 72888303 |
| ENSE00002305754 | 72893377 | 72893535 |
| ENSE00003235032 | 72900974 | 72901073 |
| ENSE00003253564 | 72896458 | 72896556 |
| ENSE00003292584 | 72889786 | 72889957 |
| ENSE00003317917 | 72891810 | 72891896 |
| ENSE00003350786 | 72893616 | 72893703 |
| ENSE00003366077 | 72897056 | 72897151 |
| ENSE00003431492 | 72900006 | 72900081 |
| ENSE00003473823 | 72877228 | 72877346 |
| ENSE00003477851 | 72872639 | 72872720 |
| ENSE00003484653 | 72855774 | 72855923 |
| ENSE00003491909 | 72875615 | 72875737 |
| ENSE00003513790 | 72905303 | 72905445 |
| ENSE00003528442 | 72861808 | 72861914 |
| ENSE00003537675 | 72883064 | 72883232 |
| ENSE00003602767 | 72882467 | 72882527 |
| ENSE00003615011 | 72903709 | 72903783 |
| ENSE00003631090 | 72848385 | 72848498 |
| ENSE00003647928 | 72851244 | 72851319 |
| ENSE00003917906 | 72816661 | 72816752 |
Expression profiles
Bgee: expression breadth ubiquitous, 295 present calls, max score 99.74.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 105.8212 / max 499.4646, expressed in 1828 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 57016 | 47.6938 | 1825 |
| 57009 | 45.1594 | 1810 |
| 57017 | 8.4269 | 1738 |
| 57022 | 1.8971 | 977 |
| 57015 | 1.4074 | 767 |
| 57008 | 1.2366 | 815 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus epididymis | UBERON:0004359 | 99.74 | gold quality |
| caput epididymis | UBERON:0004358 | 99.73 | gold quality |
| cauda epididymis | UBERON:0004360 | 99.73 | gold quality |
| pylorus | UBERON:0001166 | 99.64 | gold quality |
| secondary oocyte | CL:0000655 | 99.63 | gold quality |
| cranial nerve II | UBERON:0000941 | 99.56 | gold quality |
| cardia of stomach | UBERON:0001162 | 99.44 | gold quality |
| renal medulla | UBERON:0000362 | 99.41 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 99.39 | gold quality |
| pericardium | UBERON:0002407 | 99.35 | gold quality |
| nipple | UBERON:0002030 | 99.29 | gold quality |
| visceral pleura | UBERON:0002401 | 99.27 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.23 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 99.23 | gold quality |
| mammary duct | UBERON:0001765 | 99.18 | gold quality |
| superior surface of tongue | UBERON:0007371 | 99.18 | gold quality |
| inferior olivary complex | UBERON:0002127 | 99.16 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 99.06 | gold quality |
| saphenous vein | UBERON:0007318 | 99.04 | gold quality |
| parietal pleura | UBERON:0002400 | 99.01 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 98.98 | gold quality |
| medulla oblongata | UBERON:0001896 | 98.97 | gold quality |
| epithelium of mammary gland | UBERON:0003244 | 98.95 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 98.86 | gold quality |
| ventral tegmental area | UBERON:0002691 | 98.86 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.83 | gold quality |
| superficial temporal artery | UBERON:0001614 | 98.83 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 98.83 | gold quality |
| urethra | UBERON:0000057 | 98.79 | gold quality |
| pleura | UBERON:0000977 | 98.78 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): IRF3, PITX3
miRNA regulators (miRDB)
512 targeting TNPO1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-513A-5P | 100.00 | 69.77 | 2465 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 31.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- nuclear import of the HPV16 E6 oncoprotein in digitonin-permeabilized HeLa cells could be mediated by Kap beta2 (PMID:12551970)
- 1 major capsid protein of human papillomavirus type 11 interacts with Kap beta2 nuclear import receptor (PMID:12620808)
- HPV16 L2 interacts via its NLSs with a network of karyopherins and can enter the nucleus via several import pathways mediated by Kapalpha(2)beta(1) heterodimers, Kapbeta(2), and Kapbeta(3). (PMID:15507604)
- Results describe four crystal structures of human transoprtin 1 in a substrate-free form as well as in the complex with three nuclear localization signals. (PMID:17936704)
- the 3.0 A crystal structure of unliganded Kap beta2, which consists of a superhelix of 20 HEAT repeats (PMID:17997969)
- TRN1-binding to CCR2 promotes its nuclear translocation in a TRN1-dependent manner. (PMID:18846510)
- Data suggest that increased MIP-1alpha/beta production enhances multiple myeloma cell binding to stromal cells by VLA-4-VCAM-1 adhesion, forming a “vicious cycle” between MM cell adhesion to stromal cells and MIP-1 production via VLA-4-VCAM-1 interaction. (PMID:19057841)
- we identify transportin-1 as the import receptor for ADAR1. (PMID:19124606)
- Ran in complex with importin-beta has a higher affinity for GTP. This feature is responsible for the generation of Ran-GTP from Ran-GDP by importin-beta. (PMID:19549784)
- The interplay of the two negative regulators, transportin and importin beta, along with the positive regulator RanGTP, allows precise choreography of multiple cell cycle assembly events. (PMID:19641022)
- Results suggest that hnRNP H and F are nuclear shuttling proteins whose posttranslational modifications may alter interaction with transportin 1, nuclear localization, and hence function. (PMID:20308327)
- Nuclear import of fused in sarcoma (FUS) is dependent on Transportin, and interference with this transport pathway leads to cytoplasmic redistribution and recruitment of fused in sarcoma (FUS) into stress granules. (PMID:20606625)
- Data demonstrate that Importin beta2 is necessary for localization of retinitis pigmentosa 2 (RP2) to the primary cilium, and identify two distinct binding sites of RP2, which interact independently with Importin beta2. (PMID:21285245)
- Transportin binding might delay methylation of PABPN1 until after nuclear import. (PMID:21808065)
- These data imply a specific dysfunction in the interaction between Trn1 and FET proteins in the inclusion body formation in FTLD-FUS. (PMID:22842875)
- C-terminal FUS mutations prevent TNPO 1 binding to the NLS, inhibiting nuclear import and promoting cytoplasmic aggregation. The presence of TNPO 1 in wild-type FUS aggregates in frontotemporal lobar degeneration-FUS distinguishes it from ALS. (PMID:22934812)
- arginine methylation impairs TRN dependent nuclear import of FUS, by decreasing binding of TRN to a novel TRN-binding motif next to the proline-tyrosine nuclear localization signal of FUS. (PMID:22968170)
- Identification of a karyopherin beta1/beta2 proline-tyrosine nuclear localization signal in huntingtin protein. (PMID:23012356)
- The crystal structure of the FUS-NLS/Trn1 complex shows extensive contacts between the two proteins and a unique alpha-helical structure in the FUS-NLS. (PMID:23056579)
- In case of L7, importin beta2 or importin beta3 are preferentially used by clusters with a high import efficiency. (PMID:23266416)
- Disulfide formation with transportin-1 is required for nuclear localization and the activation of FOXO4 induced by reactive oxygen species. (PMID:23333309)
- Crystal structure of human Karyopherin beta2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2 (PMID:23535894)
- Data suggest the C-terminal nuclear localization domain (QYP) is critical for RAM (RNMT-activating mini protein) to enter the cell nucleus where RAM activates RNMT resulting in mRNA cap methylation; TNPO1/TNPO2 mediate RAM nuclear entry. (PMID:24200467)
- ADAR1 carries a unique nuclear localization signal (NLS) that overlaps one of its double-stranded RNA-binding domains (dsRBDs). This dsRBD-NLS is recognized by nuclear import receptor transportin 1 (also called karyopherin-beta2) in an RNA-sensitive manner. (PMID:24753571)
- Studies indicate potential roles of Tranportin-1 and Transportin-2 beyond protein nuclear import. (PMID:24780099)
- Kapbeta2 interacts with ULK2 through ULK2’s putative PY-NLS motif, and facilitates transport from the cytoplasm to the nucleus, depending on its Ser1027 residue phosphorylation by PKA, thereby reducing autophagic activity. (PMID:26052940)
- FGF2 nuclear translocation is regulated by Karyopherin-beta2 and Ran GTPase in human glioblastoma cells (PMID:26056081)
- A molecular docking and dynamics study concluded that R521C and R521H mutations in FUS result in weak binding with Karyopherin-beta2 leading to amyotrophic lateral sclerosis. (PMID:27381509)
- Importins, Impbeta, Kapbeta2, Imp4, Imp5, Imp7, Imp9, and Impalpha, show the H3 tail binding more tightly than the H4 tail. The H3 tail binds Kapbeta2 and Imp5 with KD values of 77 and 57 nm, respectively, and binds the other five Importins more weakly. (PMID:27528606)
- Results show that Karyopherin-b2 binds to the N-terminal tail of histone H3 with high affinity even though H3 lacks a recognizable proline-tyrosine nuclear localization signal (PY-NLS). (PMID:27618664)
- the TNPO1-Rab8-ciliary targeting signals complex mediates selective entry into and retention of cargos within cilia. (PMID:27633000)
- Together, these results indicate that transportin-1 mediates YB-1 nuclear translocation. (PMID:27794479)
- findings suggest that a new player, i.e., O-GlcNAcylation, regulates hnRNP A1 translocation and interaction with Trn1, possibly affecting its function (PMID:27913144)
- Data suggest that micoRNA-128 targets the 3prime-untranslated region of nuclear import factor transportin 1 (TNPO1) mRNA. (PMID:28974576)
- TNPO1-mediated nuclear import may constitute a novel input pathway of how cellular redox state signals to the clock, since redox stress increases binding of TNPO1 to PER1 and decreases its nuclear localization. TNPO1 is one of the novel players essential for normal circadian periods and potentially for redox regulation of the clock. (PMID:29377895)
- high-affinity binding of karyopherin-beta2 to the FUS C-terminal proline-tyrosine nuclear localization signal tethers the proteins together, allowing multiple, distributed weak intermolecular contacts to disrupt FUS self-association, blocking liquid-liquid phase separation (PMID:29677513)
- Transportin 1, a member of the importin-beta family proteins, binds to a PY-NLS(2) sequence motif close to the amino terminus of matrix protein (M1) exposed during acid priming of the viral core. (PMID:30692667)
- Study provides evidence that TRN-1 mediates the timely release of the HIV-1 genome from the capsid protein shell and efficient viral nuclear import. (PMID:31611641)
- The Renpenning syndrome-associated protein PQBP1 facilitates the nuclear import of splicing factor TXNL4A through the karyopherin beta2 receptor. (PMID:32041777)
- Nup358 and Transportin 1 Cooperate in Adenoviral Genome Import. (PMID:32161167)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tnpo1 | ENSDARG00000035390 |
| mus_musculus | Tnpo1 | ENSMUSG00000009470 |
| rattus_norvegicus | Tnpo1 | ENSRNOG00000014999 |
| drosophila_melanogaster | CG8219 | FBGN0035693 |
| caenorhabditis_elegans | WBGENE00002076 |
Paralogs (5): IPO5 (ENSG00000065150), TNPO2 (ENSG00000105576), KPNB1 (ENSG00000108424), RANBP6 (ENSG00000137040), IPO4 (ENSG00000196497)
Protein
Protein identifiers
Transportin-1 — Q92973 (reviewed: Q92973)
Alternative names: Importin beta-2, Karyopherin beta-2, M9 region interaction protein
All UniProt accessions (7): Q92973, A0A7P0T944, A0A7P0T9C0, A0A7P0TBF0, A0A7P0Z4D3, E7EW37, S4R398
UniProt curated annotations — full annotation on UniProt →
Function. Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. May mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Involved in nuclear import of M9-containing proteins. In vitro, binds directly to the M9 region of the heterogeneous nuclear ribonucleoproteins (hnRNP), A1 and A2 and mediates their nuclear import. Involved in hnRNP A1/A2 nuclear export. Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In vitro, mediates nuclear import of SRP19. Mediates nuclear import of ADAR/ADAR1 isoform 1 and isoform 5 in a RanGTP-dependent manner. Main mediator of PR-DUB complex component BAP1 nuclear import; acts redundantly with the karyopherins KPNA1 and KPNA2. (Microbial infection) In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
Subunit / interactions. Identified in a complex that contains TNPO1, RAN and RANBP1. Binds HNRPA1, HNRPA2, HNRNPDL, RPS7, RPL5 and RAN. Interacts with H2A, H2B, H3 and H4 histones. Interacts with isoform 1 and isoform 5 of ADAR/ADAR1 (via DRBM 3 domain). Interacts with SNAI1 (via zinc fingers); the interaction mediates SNAI1 nuclear import. Interacts with SNAI2 (via zinc fingers). Interacts with RPL23A (via BIB domain) and SRP19; this interaction is involved in RPL23A and SRP19 import into the nucleus. Interacts (via HEAT repeats 8-12) with BAP1 (via non-classical PY-NLS); this interaction is direct, is involved in BAP1 nuclear import and disrupts BAP1 homodimerization. (Microbial infection) Binds to HIV-1 Rev.
Subcellular location. Cytoplasm. Nucleus.
Similarity. Belongs to the importin beta family. Importin beta-2 subfamily.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q92973-1 | 1 | yes |
| Q92973-2 | 2 | |
| Q92973-3 | 3 |
RefSeq proteins (6): NP_001351221, NP_001351222, NP_001351223, NP_001351224, NP_002261, NP_694858 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001494 | Importin-beta_N | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR040122 | Importin_beta | Family |
| IPR057672 | TPR_IPO4/5 | Domain |
| IPR058584 | IMB1_TNPO1-like_TPR | Domain |
Pfam: PF03810, PF13513, PF25574, PF25780
UniProt features (121 total): helix 68, repeat 20, strand 9, turn 9, sequence conflict 4, site 2, splice variant 2, mutagenesis site 2, chain 1, modified residue 1, domain 1, region of interest 1, compositionally biased region 1
Structure
Experimental structures (PDB)
21 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4FDD | X-RAY DIFFRACTION | 2.3 |
| 2Z5K | X-RAY DIFFRACTION | 2.6 |
| 4OO6 | X-RAY DIFFRACTION | 2.7 |
| 7CYL | X-RAY DIFFRACTION | 2.7 |
| 5YVI | X-RAY DIFFRACTION | 2.9 |
| 1QBK | X-RAY DIFFRACTION | 3 |
| 2QMR | X-RAY DIFFRACTION | 3 |
| 2Z5M | X-RAY DIFFRACTION | 3 |
| 4FQ3 | X-RAY DIFFRACTION | 3 |
| 5TQC | X-RAY DIFFRACTION | 3 |
| 2H4M | X-RAY DIFFRACTION | 3.05 |
| 4JLQ | X-RAY DIFFRACTION | 3.05 |
| 5J3V | X-RAY DIFFRACTION | 3.05 |
| 2OT8 | X-RAY DIFFRACTION | 3.1 |
| 5YVH | X-RAY DIFFRACTION | 3.15 |
| 8SGH | ELECTRON MICROSCOPY | 3.17 |
| 2Z5N | X-RAY DIFFRACTION | 3.2 |
| 2Z5O | X-RAY DIFFRACTION | 3.2 |
| 2Z5J | X-RAY DIFFRACTION | 3.4 |
| 7VPW | X-RAY DIFFRACTION | 3.76 |
| 5YVG | X-RAY DIFFRACTION | 4.05 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92973-F1 | 92.24 | 0.83 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 468 (important for interaction with cargo nuclear localization signals); 738 (important for interaction with cargo nuclear localization signals)
Post-translational modifications (1): 1
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 468 | abolishes interaction with the adar nuclear localization signal. abolishes adar nuclear import. |
| 738 | abolishes interaction with the adar nuclear localization signal. abolishes adar nuclear import. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-450513 | Tristetraprolin (TTP, ZFP36) binds and destabilizes mRNA |
| R-HSA-5620924 | Intraflagellar transport |
| R-HSA-9615933 | Postmitotic nuclear pore complex (NPC) reformation |
MSigDB gene sets: 514 (showing top):
WENDT_COHESIN_TARGETS_UP, TONKS_TARGETS_OF_RUNX1_RUNX1T1_FUSION_MONOCYTE_UP, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, JI_RESPONSE_TO_FSH_UP, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, SP3_Q3, TACAATC_MIR508, MODULE_352, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, GOMF_GTPASE_BINDING, PATIL_LIVER_CANCER, GOBP_NUCLEAR_TRANSPORT, GOBP_CELL_CELL_ADHESION, GOBP_WATER_TRANSPORT, ONKEN_UVEAL_MELANOMA_UP
GO Biological Process (3): protein import into nucleus (GO:0006606), intracellular protein transport (GO:0006886), protein transport (GO:0015031)
GO Molecular Function (5): RNA binding (GO:0003723), nuclear localization sequence binding (GO:0008139), small GTPase binding (GO:0031267), nuclear import signal receptor activity (GO:0061608), protein binding (GO:0005515)
GO Cellular Component (8): nucleus (GO:0005634), nucleoplasm (GO:0005654), nucleolus (GO:0005730), cytoplasm (GO:0005737), cytosol (GO:0005829), cilium (GO:0005929), extracellular exosome (GO:0070062), nuclear lumen (GO:0031981)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Regulation of mRNA stability by proteins that bind AU-rich elements | 1 |
| Assembly of the 9+0 primary cilium | 1 |
| Nuclear Envelope (NE) Reassembly | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| import into nucleus | 2 |
| intracellular protein localization | 2 |
| nuclear lumen | 2 |
| intracellular protein transport | 1 |
| protein localization to nucleus | 1 |
| establishment of protein localization to organelle | 1 |
| protein transport | 1 |
| intracellular transport | 1 |
| transport | 1 |
| establishment of protein localization | 1 |
| nucleic acid binding | 1 |
| signal sequence receptor activity | 1 |
| GTPase binding | 1 |
| nucleocytoplasmic carrier activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
| extracellular vesicle | 1 |
| nucleus | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
2562 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TNPO1 | HNRNPA1 | P09651 | 995 |
| TNPO1 | TNPO3 | Q9Y5L0 | 955 |
| TNPO1 | PHGDH | O43175 | 913 |
| TNPO1 | FUS | P35637 | 867 |
| TNPO1 | KIF17 | Q9P2E2 | 822 |
| TNPO1 | RGPD5 | Q99666 | 814 |
| TNPO1 | IPO7 | O95373 | 800 |
| TNPO1 | CSE1L | P55060 | 794 |
| TNPO1 | NUP153 | P49790 | 794 |
| TNPO1 | FOXO4 | P98177 | 779 |
| TNPO1 | IPO9 | Q96P70 | 778 |
| TNPO1 | RANBP2 | P49792 | 763 |
| TNPO1 | NUP62 | P37198 | 747 |
| TNPO1 | IPO8 | O15397 | 745 |
| TNPO1 | XPO1 | O14980 | 742 |
| TNPO1 | RAN | P17080 | 742 |
IntAct
172 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NUP153 | KPNB1 | psi-mi:“MI:0914”(association) | 0.820 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| TNPO1 | HNRNPM | psi-mi:“MI:0407”(direct interaction) | 0.620 |
| FAM234B | ABCD4 | psi-mi:“MI:0914”(association) | 0.620 |
| LRRK2 | PSMD11 | psi-mi:“MI:0914”(association) | 0.600 |
| RAN | TNPO1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| FUS | TNPO1 | psi-mi:“MI:0407”(direct interaction) | 0.590 |
| TNPO1 | psi-mi:“MI:0407”(direct interaction) | 0.560 | |
| TNPO1 | HNRNPA1 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| TNPO1 | CIRBP | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| CIRBP | TNPO1 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
| NXF1 | TNPO1 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| NXF1 | TNPO1 | psi-mi:“MI:0915”(physical association) | 0.540 |
| EGFR | NDUFA4 | psi-mi:“MI:0914”(association) | 0.530 |
| KPNB1 | POM121C | psi-mi:“MI:0914”(association) | 0.530 |
| TMA16 | TNPO2 | psi-mi:“MI:0914”(association) | 0.530 |
| EPHA1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| VAMP5 | NBAS | psi-mi:“MI:0914”(association) | 0.530 |
| CD40 | EXOC5 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (413): TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), TNPO1 (Affinity Capture-MS), IPO7 (Co-fractionation), IPO8 (Co-fractionation), IPO9 (Co-fractionation), RAN (Co-fractionation), RANBP6 (Co-fractionation), TNPO1 (Co-fractionation), TNPO1 (Co-fractionation), TNPO1 (Co-fractionation)
ESM2 similar proteins: A0JN27, C9WPN6, F1LTR1, F1QGW6, O14787, O14980, O15294, P17427, P18484, P20461, P41091, P52296, P52297, P56558, P61201, P61202, P61203, P70168, P81436, P81795, Q13888, Q14974, Q27HV0, Q28D01, Q2KHU8, Q2TBV5, Q2VIR3, Q3SYU7, Q5F398, Q5HZM6, Q5R797, Q5RIC0, Q5SP67, Q5ZHS1, Q5ZMS3, Q6IQT4, Q6IR75, Q6NVL5, Q6P1K8, Q6P5F9
Diamond homologs: B8ARW2, B9FDR3, O14089, O14787, Q3SYU7, Q55CQ7, Q8BFY9, Q8H0U4, Q92973, Q99LG2, P38217, P52296, P70168
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TNPO1 | “up-regulates activity” | PER1 | relocalization |
| RANBP2 | “up-regulates activity” | TNPO1 | binding |
| TNPO1 | “up-regulates activity” | HNRNPA1 | relocalization |
| TNPO1 | “up-regulates activity” | NUP153 | relocalization |
| TNPO1 | “up-regulates activity” | FUS | relocalization |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 178 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| GRB2 events in EGFR signaling | 5 | 34.6× | 4e-05 |
| SHC1 events in EGFR signaling | 5 | 32.4× | 4e-05 |
| Constitutive Signaling by EGFRvIII | 5 | 32.4× | 4e-05 |
| Signaling by ERBB2 ECD mutants | 5 | 30.5× | 5e-05 |
| GRB2 events in ERBB2 signaling | 5 | 28.8× | 6e-05 |
| Constitutive Signaling by Ligand-Responsive EGFR Cancer Variants | 5 | 25.9× | 7e-05 |
| SHC1 events in ERBB2 signaling | 5 | 21.6× | 1e-04 |
| Signaling by ERBB2 TMD/JMD mutants | 5 | 21.6× | 1e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| RNA export from nucleus | 5 | 33.2× | 2e-04 |
| NLS-bearing protein import into nucleus | 5 | 28.5× | 3e-04 |
| protein import into nucleus | 12 | 12.3× | 3e-07 |
| Ras protein signal transduction | 6 | 8.8× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
227 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 15 |
| Likely pathogenic | 7 |
| Uncertain significance | 116 |
| Likely benign | 18 |
| Benign | 25 |
Top pathogenic / likely-pathogenic (22)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1069403 | NM_012064.4(MIP):c.606+1G>C | Pathogenic |
| 14354 | NM_012064.4(MIP):c.413C>G (p.Thr138Arg) | Pathogenic |
| 14355 | NM_012064.4(MIP):c.401A>G (p.Glu134Gly) | Pathogenic |
| 1806189 | NM_012064.4(MIP):c.616_632del (p.Val206fs) | Pathogenic |
| 217342 | NM_012064.4(MIP):c.97C>T (p.Arg33Cys) | Pathogenic |
| 217345 | NM_012064.4(MIP):c.597_598insGGGAACATTCCACT (p.Asn200fs) | Pathogenic |
| 252956 | NM_012064.4(MIP):c.631G>T (p.Gly211Ter) | Pathogenic |
| 2629509 | NM_012064.4(MIP):c.605G>A (p.Trp202Ter) | Pathogenic |
| 2722298 | NM_012064.4(MIP):c.606+1G>T | Pathogenic |
| 377392 | NM_012064.4(MIP):c.508dup (p.Leu170fs) | Pathogenic |
| 432015 | NM_012064.4(MIP):c.698G>A (p.Arg233Lys) | Pathogenic |
| 4727827 | NM_012064.4(MIP):c.162dup (p.Leu55fs) | Pathogenic |
| 4734471 | NM_012064.4(MIP):c.530_531del (p.Tyr177fs) | Pathogenic |
| 474241 | NM_012064.4(MIP):c.623del (p.Pro208fs) | Pathogenic |
| 992878 | NM_012064.4(MIP):c.615G>A (p.Trp205Ter) | Pathogenic |
| 1176948 | NM_012064.4(MIP):c.698_699del (p.Arg233fs) | Likely pathogenic |
| 1703071 | NM_012064.4(MIP):c.559del (p.Arg187fs) | Likely pathogenic |
| 3061915 | NM_012064.4(MIP):c.493_494insT (p.Gly165fs) | Likely pathogenic |
| 3345576 | NM_012064.4(MIP):c.494G>A (p.Gly165Asp) | Likely pathogenic |
| 391974 | NM_012064.4(MIP):c.401A>C (p.Glu134Ala) | Likely pathogenic |
| 392878 | NM_012064.4(MIP):c.526-2A>C | Likely pathogenic |
| 944316 | NM_012064.4(MIP):c.525+1G>A | Likely pathogenic |
SpliceAI
4057 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:72855768:TTACA:T | acceptor_loss | 1.0000 |
| 5:72855769:TACA:T | acceptor_loss | 1.0000 |
| 5:72855770:ACAG:A | acceptor_loss | 1.0000 |
| 5:72855771:CA:C | acceptor_loss | 1.0000 |
| 5:72855772:A:AC | acceptor_loss | 1.0000 |
| 5:72855772:A:AG | acceptor_gain | 1.0000 |
| 5:72855772:AGAT:A | acceptor_gain | 1.0000 |
| 5:72855773:G:GT | acceptor_gain | 1.0000 |
| 5:72855773:GA:G | acceptor_gain | 1.0000 |
| 5:72855773:GAT:G | acceptor_gain | 1.0000 |
| 5:72855773:GATG:G | acceptor_gain | 1.0000 |
| 5:72855773:GATGA:G | acceptor_gain | 1.0000 |
| 5:72855920:GTTG:G | donor_gain | 1.0000 |
| 5:72855922:TGG:T | donor_loss | 1.0000 |
| 5:72855924:G:GG | donor_gain | 1.0000 |
| 5:72855924:GT:G | donor_loss | 1.0000 |
| 5:72855925:TAA:T | donor_loss | 1.0000 |
| 5:72860503:T:G | acceptor_gain | 1.0000 |
| 5:72865590:TTACA:T | acceptor_loss | 1.0000 |
| 5:72865591:TACAG:T | acceptor_loss | 1.0000 |
| 5:72865593:CAGG:C | acceptor_loss | 1.0000 |
| 5:72865594:A:AG | acceptor_gain | 1.0000 |
| 5:72865594:A:T | acceptor_loss | 1.0000 |
| 5:72865594:AG:A | acceptor_gain | 1.0000 |
| 5:72865595:G:GG | acceptor_gain | 1.0000 |
| 5:72865595:GG:G | acceptor_gain | 1.0000 |
| 5:72865595:GGGA:G | acceptor_gain | 1.0000 |
| 5:72865725:ATAAG:A | donor_loss | 1.0000 |
| 5:72865726:TAAG:T | donor_loss | 1.0000 |
| 5:72865727:AAGG:A | donor_loss | 1.0000 |
AlphaMissense
5990 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:72848446:T:C | L26P | 1.000 |
| 5:72848449:T:C | L27S | 1.000 |
| 5:72851248:T:C | L45P | 1.000 |
| 5:72851257:T:C | L48P | 1.000 |
| 5:72851274:T:C | F54L | 1.000 |
| 5:72851276:T:A | F54L | 1.000 |
| 5:72851276:T:G | F54L | 1.000 |
| 5:72851287:T:C | L58S | 1.000 |
| 5:72851287:T:G | L58W | 1.000 |
| 5:72851296:T:A | V61D | 1.000 |
| 5:72851299:T:C | L62P | 1.000 |
| 5:72855785:A:G | R73G | 1.000 |
| 5:72855786:G:C | R73T | 1.000 |
| 5:72855786:G:T | R73I | 1.000 |
| 5:72855787:A:C | R73S | 1.000 |
| 5:72855787:A:T | R73S | 1.000 |
| 5:72855794:A:C | S76R | 1.000 |
| 5:72855796:T:A | S76R | 1.000 |
| 5:72855796:T:G | S76R | 1.000 |
| 5:72855797:G:C | G77R | 1.000 |
| 5:72855798:G:A | G77D | 1.000 |
| 5:72855798:G:T | G77V | 1.000 |
| 5:72855801:T:A | L78H | 1.000 |
| 5:72855801:T:C | L78P | 1.000 |
| 5:72855807:T:G | L80W | 1.000 |
| 5:72855809:A:G | K81E | 1.000 |
| 5:72855810:A:C | K81T | 1.000 |
| 5:72855810:A:T | K81M | 1.000 |
| 5:72855811:G:C | K81N | 1.000 |
| 5:72855811:G:T | K81N | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000015732 (5:72853444 A>C), RS1000025311 (5:72816723 C>T), RS1000026623 (5:72895834 T>A), RS1000063573 (5:72876601 A>C), RS1000088832 (5:72853188 C>G,T), RS1000092416 (5:72816964 A>G), RS1000100922 (5:72891324 G>C), RS1000150455 (5:72815059 C>A,T), RS1000157424 (5:72898034 A>G), RS1000185856 (5:72823330 A>G), RS1000211668 (5:72823559 T>C), RS1000228275 (5:72858749 A>G), RS1000251709 (5:72856112 A>G,T), RS1000321923 (5:72847916 A>G), RS1000331018 (5:72908168 A>G)
Disease associations
OMIM: gene MIM:602901 | disease phenotypes: MIM:615274, MIM:221900
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| cataract 15 multiple types | Definitive | Autosomal dominant |
| early-onset lamellar cataract | Supportive | Autosomal dominant |
| early-onset sutural cataract | Supportive | Autosomal dominant |
| cerulean cataract | Supportive | Autosomal dominant |
| early-onset nuclear cataract | Supportive | Autosomal dominant |
| early-onset posterior polar cataract | Supportive | Autosomal dominant |
| total early-onset cataract | Supportive | Autosomal dominant |
| Tourette syndrome | No Known Disease Relationship | Unknown |
Mondo (11): cataract 15 multiple types (MONDO:0014110), persistent hyperplastic primary vitreous (MONDO:0019631), pathologic nystagmus (MONDO:0004843), microphthalmia (MONDO:0021129), Tourette syndrome (MONDO:0007661), early-onset lamellar cataract (MONDO:0018611), early-onset sutural cataract (MONDO:0020372), cerulean cataract (MONDO:0020374), early-onset nuclear cataract (MONDO:0020376), early-onset posterior polar cataract (MONDO:0020378), total early-onset cataract (MONDO:0021548)
Orphanet (2): Early onset non-syndromic cataract (Orphanet:91492), Persistent hyperplastic primary vitreous (Orphanet:91495)
HPO phenotypes
1 total (1 of 1 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000568 | Microphthalmia |
GWAS associations
28 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002115_16 | Axial length | 4.000000e-07 |
| GCST004599_100 | Mean platelet volume | 4.000000e-16 |
| GCST004603_228 | Platelet count | 9.000000e-10 |
| GCST004605_73 | Mean corpuscular hemoglobin concentration | 6.000000e-15 |
| GCST005988_5 | Serum albumin levels | 1.000000e-08 |
| GCST005992_7 | Mean corpuscular hemoglobin concentration | 5.000000e-09 |
| GCST006804_62 | Red cell distribution width | 4.000000e-12 |
| GCST007445_42 | Factor VIII levels | 2.000000e-10 |
| GCST007445_8 | Factor VIII levels | 5.000000e-10 |
| GCST007446_2 | vWF levels | 6.000000e-13 |
| GCST007446_41 | vWF levels | 1.000000e-12 |
| GCST007446_61 | vWF levels | 3.000000e-12 |
| GCST007446_81 | vWF levels | 1.000000e-12 |
| GCST007692_81 | Chronic obstructive pulmonary disease | 3.000000e-08 |
| GCST007932_52 | Medication use (thyroid preparations) | 2.000000e-08 |
| GCST008839_17 | Height | 1.000000e-15 |
| GCST012020_368 | Serum metabolite levels | 5.000000e-16 |
| GCST012020_369 | Serum metabolite levels | 2.000000e-26 |
| GCST012232_21 | Lipoprotein (a) levels | 2.000000e-08 |
| GCST90002384_108 | Hemoglobin | 2.000000e-17 |
| GCST90002390_130 | Mean corpuscular hemoglobin | 6.000000e-15 |
| GCST90002391_33 | Mean corpuscular hemoglobin concentration | 3.000000e-28 |
| GCST90002395_670 | Mean platelet volume | 3.000000e-28 |
| GCST90002400_686 | Plateletcrit | 3.000000e-20 |
| GCST90002402_767 | Platelet count | 9.000000e-22 |
| GCST90002402_768 | Platelet count | 4.000000e-09 |
| GCST90002404_207 | Red cell distribution width | 1.000000e-42 |
| GCST90013407_57 | Liver enzyme levels (gamma-glutamyl transferase) | 7.000000e-17 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005318 | axial length measurement |
| EFO:0004309 | platelet count |
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0009188 | Red cell distribution width |
| EFO:0004630 | factor VIII measurement |
| EFO:0009933 | Thyroid preparation use measurement |
| EFO:0006925 | lipoprotein A measurement |
| EFO:0004509 | hemoglobin measurement |
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0007985 | platelet crit |
| EFO:0004532 | serum gamma-glutamyl transferase measurement |
MeSH disease descriptors (6)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008850 | Microphthalmos | C11.250.566; C16.131.384.666 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| D054514 | Persistent Hyperplastic Primary Vitreous | C11.250.616; C16.131.384.725 |
| D005879 | Tourette Syndrome | C10.228.140.079.898; C10.228.662.825.800; C10.574.500.850; C16.320.400.820; F03.625.992.850 |
| C563333 | Cataract, Age-Related Nuclear (supp.) | |
| C537955 | Cerulean cataract (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5725070 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
4 potent at pChembl≥5 of 4 total, top 4 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.33 | Kd | 463.8 | nM | CHEMBL5653589 |
| 6.33 | ED50 | 463.8 | nM | CHEMBL5653589 |
| 5.42 | Kd | 3814 | nM | CHEMBL3752910 |
| 5.42 | ED50 | 3814 | nM | CHEMBL3752910 |
PubChem BioAssay actives
2 with measured affinity, of 10 total; 2 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149628: Binding affinity to human TNPO1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.4638 | uM |
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149628: Binding affinity to human TNPO1 incubated for 45 mins by Kinobead based pull down assay | kd | 3.8136 | uM |
CTD chemical–gene interactions
66 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, affects expression, decreases expression | 3 |
| methylmercuric chloride | increases expression, decreases expression | 2 |
| bisphenol A | decreases expression, increases expression | 2 |
| sodium arsenite | increases abundance, increases expression | 2 |
| cadmium sulfate | increases expression | 2 |
| Acetaminophen | increases expression | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases oxidation, decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| Calcitriol | increases activity, decreases activity, decreases expression, affects binding, increases reaction | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| Tretinoin | decreases expression, affects expression | 2 |
| Cyclosporine | increases expression | 2 |
| Aflatoxin B1 | decreases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| uranyl acetate | affects expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| afimoxifene | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| aflatoxin B2 | decreases methylation | 1 |
| 1-nitropyrene | increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| manumycin | decreases expression, decreases reaction | 1 |
| tamibarotene | decreases expression | 1 |
ChEMBL screening assays
7 unique, capped per target: 7 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652670 | Binding | Binding affinity to human TNPO1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_TT18 | HAP1 TNPO1 (-) 1 | Cancer cell line | Male |
| CVCL_TT19 | HAP1 TNPO1 (-) 2 | Cancer cell line | Male |
| CVCL_TT20 | HAP1 TNPO1 (-) 3 | Cancer cell line | Male |
| CVCL_XU62 | HAP1 TNPO1 (-) 4 | Cancer cell line | Male |
Clinical trials (associated diseases)
189 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00152750 | PHASE4 | UNKNOWN | Study of Clonidine on Sleep Architecture in Children With Tourette’s Syndrome (TS) and Comorbid ADHD |
| NCT00226824 | PHASE4 | TERMINATED | Safety Study of Galantamine in Tic Disorders |
| NCT00241176 | PHASE4 | COMPLETED | Open Label Trial of Aripiprazole in Children and Adolescents With Tourette’s Disorder |
| NCT00370838 | PHASE4 | COMPLETED | Comparison of Keppra and Clonidine in the Treatment of Tics |
| NCT01018056 | PHASE4 | COMPLETED | Developing New Treatments for Tourette Syndrome: Therapeutic Trials With Modulators of Glutamatergic Neurotransmission |
| NCT01547000 | PHASE4 | COMPLETED | Guanfacine in Children With Tic Disorders |
| NCT03239210 | PHASE4 | COMPLETED | Effects of Ondansetron in Obsessive-compulsive and Tic Disorders |
| NCT00004376 | PHASE3 | COMPLETED | Phase III Randomized, Double-Blind, Placebo-Controlled Study of Guanfacine for Tourette Syndrome and Attention Deficit Hyperactivity Disorder |
| NCT00206323 | PHASE3 | COMPLETED | A Randomized, Placebo-controlled, Tourette Syndrome Study. |
| NCT00206336 | PHASE3 | COMPLETED | An Open-label Study to Determine the Efficacy and Safety of Topiramate in the Treatment of Tourette Syndrome. |
| NCT00478842 | PHASE3 | COMPLETED | Pallidal Stimulation and Gilles de la Tourette Syndrome |
| NCT00681863 | PHASE3 | TERMINATED | Open-label Extension Study of Pramipexole in the Treatment of Children and Adolescents With Tourette Syndrome |
| NCT01501695 | PHASE3 | COMPLETED | Phase III Study of 5LGr to Treat Tic Disorder |
| NCT03087201 | PHASE3 | COMPLETED | CANNAbinoids in the Treatment of TICS (CANNA-TICS) |
| NCT03487783 | PHASE3 | COMPLETED | Aripiprazole Oral Solution in the Treatment of Children and Adolescents With Tourette’s Syndrome |
| NCT03567291 | PHASE3 | TERMINATED | Evaluation of Safety and Tolerability of Long-term TEV-50717 (Deutetrabenazine) for Treatment of Tourette Syndrome in Children and Adolescents |
| NCT03571256 | PHASE3 | COMPLETED | A Study to Test if TEV-50717 is Effective in Relieving Tics Associated With Tourette Syndrome (TS) |
| NCT06021522 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate Long-term Safety of Ecopipam Tablets in Children, Adolescents and Adults With Tourette’s Disorder |
| NCT00004393 | PHASE2 | COMPLETED | Phase II Double Blind Placebo Controlled Trial of Risperidone in Tourette Syndrome |
| NCT00004652 | PHASE2 | COMPLETED | Phase II Pilot Controlled Study of Short Vs Longer Term Pimozide (Orap) Therapy in Tourette Syndrome |
| NCT00231985 | PHASE2 | COMPLETED | Effectiveness of Behavior Therapy and Psychosocial Therapy for the Treatment of Tourette Syndrome and Chronic Tic Disorder |
| NCT00311909 | PHASE2 | COMPLETED | Thalamic Deep Brain Stimulation for Tourette Syndrome |
| NCT00529308 | PHASE2 | COMPLETED | Transcranial Magnetic Stimulation (TMS) for Individuals With Tourette’s Syndrome |
| NCT00558467 | PHASE2 | COMPLETED | Pramipexole Pilot Phase II Study in Children and Adolescents With Tourette Disorder According to DSM-IV Criteria |
| NCT01043549 | PHASE2 | TERMINATED | Repetitive Transcranial Magnetic Stimulation of the Posterior Parietal Cortex in Patients Suffering From Gilles de la Tourette Syndrome |
| NCT01133353 | PHASE2 | WITHDRAWN | A Study of the Effectiveness and Safety of Tetrabenazine MR in Pediatric Subjects With Tourette’s Syndrome |
| NCT01475383 | PHASE2 | WITHDRAWN | Study Evaluating The Safety And Efficacy Of PF-03654746 In Adult Subjects With Tourette’s Syndrome |
| NCT01647269 | PHASE2 | COMPLETED | A Trial of Bilateral Deep Brain Stimulation to the Globus Pallidus Internum in Tourette Syndrome |
| NCT01904773 | PHASE2 | COMPLETED | Safety, Tolerability, Pharmacokinetic, and Efficacy Study of AZD5213 in Adolescents With Tourette’s Disorder |
| NCT02102698 | PHASE2 | COMPLETED | Ecopipam Treatment of Tourette’s Syndrome in Subjects 7-17 Years |
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Related Atlas pages
- Associated diseases: cataract 15 multiple types, Tourette syndrome, early-onset lamellar cataract, early-onset sutural cataract, cerulean cataract, early-onset nuclear cataract, early-onset posterior polar cataract, total early-onset cataract
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): cataract 15 multiple types, cerulean cataract, early-onset lamellar cataract, early-onset nuclear cataract, early-onset posterior polar cataract, early-onset sutural cataract, microphthalmia, pathologic nystagmus, persistent hyperplastic primary vitreous, total early-onset cataract