TNR-IT1

Summary

TNR-IT1 (TNR intronic transcript 1, HGNC:41391) is a long non-coding RNA gene on chromosome 1q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41391
Approved symbol	TNR-IT1
Name	TNR intronic transcript 1
Location	1q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235628
Ensembl biotype	lncRNA
Entrez	100874256
RNAcentral	URS00004EE1B4 — lncRNA, 630 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000455447

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000455447 — 2 exons

Exon	Start	End
ENSE00001659282	175538775	175539176
ENSE00001697414	175556591	175556818

Expression profiles

Bgee: expression breadth broad, 39 present calls, max score 66.54.

Top tissues by expression

39 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal gland	UBERON:0002369	66.54	gold quality
corpus callosum	UBERON:0002336	61.90	gold quality
blood	UBERON:0000178	53.60	silver quality
thyroid gland	UBERON:0002046	53.43	gold quality
primary visual cortex	UBERON:0002436	53.27	gold quality
prefrontal cortex	UBERON:0000451	51.03	gold quality
skin of abdomen	UBERON:0001416	49.14	gold quality
monocyte	CL:0000576	48.72	silver quality
superior frontal gyrus	UBERON:0002661	47.20	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	47.18	gold quality
lung	UBERON:0002048	45.71	silver quality
nucleus accumbens	UBERON:0001882	44.62	gold quality
brain	UBERON:0000955	43.61	gold quality
amygdala	UBERON:0001876	43.54	gold quality
putamen	UBERON:0001874	43.17	silver quality
anterior cingulate cortex	UBERON:0009835	42.30	gold quality
cerebral cortex	UBERON:0000956	41.94	silver quality
cerebellar cortex	UBERON:0002129	41.73	silver quality
tibial artery	UBERON:0007610	41.12	silver quality
substantia nigra	UBERON:0002038	41.11	silver quality
heart left ventricle	UBERON:0002084	40.98	silver quality
Ammon’s horn	UBERON:0001954	40.91	silver quality
caudate nucleus	UBERON:0001873	40.75	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	40.16	silver quality
Brodmann (1909) area 9	UBERON:0013540	40.07	silver quality
body of pancreas	UBERON:0001150	39.62	silver quality
hypothalamus	UBERON:0001898	39.41	silver quality
cerebellar hemisphere	UBERON:0002245	39.37	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	38.88	silver quality
upper lobe of left lung	UBERON:0008952	38.73	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.