TOR1AIP2
gene geneOn this page
Also known as LULL1NET9IFRG15
Summary
TOR1AIP2 (torsin 1A interacting protein 2, HGNC:24055) is a protein-coding gene on chromosome 1q25.2, encoding Torsin-1A-interacting protein 2 (Q8NFQ8). Required for endoplasmic reticulum integrity.
One of the two protein isoforms encoded by this gene is a type II integral membrane protein found in the endoplasmic reticulum (ER). The encoded protein is a cofactor for the ATPase TorsinA, regulating the amount of TorsinA present in the ER compared to that found in the nuclear envelope. Defects in this protein are a cause of early onset primary dystonia, a neuromuscular disease. The other isoform encoded by this gene is an interferon alpha responsive protein whose cellular role has yet to be determined.
Source: NCBI Gene 163590 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 20 total — 1 pathogenic
- MANE Select transcript:
NM_001199260
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24055 |
| Approved symbol | TOR1AIP2 |
| Name | torsin 1A interacting protein 2 |
| Location | 1q25.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LULL1, NET9, IFRG15 |
| Ensembl gene | ENSG00000169905 |
| Ensembl biotype | protein_coding |
| OMIM | 614513 |
| Entrez | 163590 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 24 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000367612, ENST00000474318, ENST00000482587, ENST00000483123, ENST00000495650, ENST00000609928, ENST00000894825, ENST00000894826, ENST00000894827, ENST00000894828, ENST00000894829, ENST00000894830, ENST00000894831, ENST00000894832, ENST00000894833, ENST00000894834, ENST00000894835, ENST00000894836, ENST00000894837, ENST00000894838, ENST00000936116, ENST00000936117, ENST00000942404, ENST00000942405, ENST00000942406, ENST00000942407
RefSeq mRNA: 9 — MANE Select: NM_001199260
NM_001199260, NM_001349931, NM_001349933, NM_001349934, NM_001349935, NM_001349936, NM_001349937, NM_022347, NM_145034
CCDS: CCDS1334, CCDS53439
Canonical transcript exons
ENST00000609928 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001120664 | 179847535 | 179847636 |
| ENSE00001120667 | 179850845 | 179851363 |
| ENSE00001231760 | 179852632 | 179852811 |
| ENSE00002342499 | 179877239 | 179877373 |
| ENSE00003703145 | 179839976 | 179846828 |
| ENSE00003707494 | 179865436 | 179865854 |
| ENSE00003707760 | 179877693 | 179877803 |
Expression profiles
Bgee: expression breadth ubiquitous, 282 present calls, max score 98.31.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 48.8428 / max 310.2371, expressed in 1820 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 16092 | 40.9018 | 1820 |
| 16091 | 7.7865 | 1756 |
| 16086 | 0.1545 | 24 |
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| adrenal tissue | UBERON:0018303 | 98.31 | gold quality |
| jejunal mucosa | UBERON:0000399 | 97.46 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 96.62 | gold quality |
| parietal pleura | UBERON:0002400 | 95.71 | gold quality |
| amniotic fluid | UBERON:0000173 | 95.69 | gold quality |
| pleura | UBERON:0000977 | 94.81 | gold quality |
| visceral pleura | UBERON:0002401 | 94.04 | gold quality |
| tibia | UBERON:0000979 | 93.84 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 93.69 | gold quality |
| buccal mucosa cell | CL:0002336 | 93.60 | gold quality |
| pericardium | UBERON:0002407 | 93.53 | gold quality |
| seminal vesicle | UBERON:0000998 | 93.45 | gold quality |
| jejunum | UBERON:0002115 | 93.18 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 92.87 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 92.80 | gold quality |
| placenta | UBERON:0001987 | 92.80 | gold quality |
| decidua | UBERON:0002450 | 92.61 | gold quality |
| penis | UBERON:0000989 | 92.26 | gold quality |
| tendon | UBERON:0000043 | 91.95 | gold quality |
| lower lobe of lung | UBERON:0008949 | 91.63 | gold quality |
| calcaneal tendon | UBERON:0003701 | 91.61 | gold quality |
| stromal cell of endometrium | CL:0002255 | 91.53 | gold quality |
| gingival epithelium | UBERON:0001949 | 91.45 | gold quality |
| duodenum | UBERON:0002114 | 91.36 | gold quality |
| liver | UBERON:0002107 | 91.23 | gold quality |
| islet of Langerhans | UBERON:0000006 | 91.05 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 91.01 | gold quality |
| gingiva | UBERON:0001828 | 90.89 | gold quality |
| oocyte | CL:0000023 | 90.76 | gold quality |
| medial globus pallidus | UBERON:0002477 | 90.75 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): NANOG, POU5F1
miRNA regulators (miRDB)
226 targeting TOR1AIP2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4533 | 100.00 | 69.48 | 2758 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
Literature-anchored findings (GeneRIF, showing 6)
- identifed a novel transmembrane protein, lumenal domain like LAP1 (LULL1), which appears to interact with torsinA; it resides in the main endoplasmic reticulum. (PMID:15767459)
- Data suggest that LULL1 regulates the distribution and activity of TorA within the ER and NE lumen and reveal functional defects in the mutant protein responsible for DYT1 dystonia. (PMID:19339278)
- LAP1 and LULL1 as regulatory cofactors that are responsible for the activation of TorA’s ATPase activity. (PMID:23569223)
- LAP1 and LULL1 regulate Torsin ATPase activity through an active site complementation mechanism. (PMID:25352667)
- The Torsin Activator LULL1 Is Required for Efficient Growth of Herpes Simplex Virus 1. (PMID:26041288)
- A comparison of these structures shows, in atomic detail, the subtle differences in TorsinADeltaE-LULL1 activator interactions that separate the healthy from the diseased state. (PMID:27490483)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | zgc:112962 | ENSDARG00000069102 |
| danio_rerio | si:dkeyp-82a1.6 | ENSDARG00000094336 |
| mus_musculus | Tor1aip2 | ENSMUSG00000050565 |
| rattus_norvegicus | Tor1aip2 | ENSRNOG00000024849 |
Paralogs (1): TOR1AIP1 (ENSG00000143337)
Protein
Protein identifiers
Torsin-1A-interacting protein 2 — Q8NFQ8 (reviewed: Q8NFQ8, Q9H496)
Alternative names: Lumenal domain-like LAP1
All UniProt accessions (4): Q8NFQ8, Q9H496, A0A096LNM1, A0A6B9D1Q5
UniProt curated annotations — full annotation on UniProt →
Function. Required for endoplasmic reticulum integrity. Regulates the distribution of TOR1A between the endoplasmic reticulum and the nuclear envelope as well as induces TOR1A, TOR1B and TOR3A ATPase activity.
Subunit / interactions. Interacts with TOR1A and TOR1B (ATP-bound).
Subcellular location. Endoplasmic reticulum membrane. Nucleus membrane.
Similarity. Belongs to the TOR1AIP family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8NFQ8-1 | TOR1AIP2 | yes |
| Q9H496-1 | IFRG15 |
RefSeq proteins (9): NP_001186189, NP_001336860, NP_001336862, NP_001336863, NP_001336864, NP_001336865, NP_001336866, NP_071742, NP_659471 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008662 | TOIP1/2 | Family |
| IPR038599 | LAP1C-like_C_sf | Homologous_superfamily |
| IPR046753 | TOIP1/2_C | Domain |
| IPR046754 | TOIP1/2_N | Domain |
Pfam: PF05609, PF20443
UniProt features (41 total): helix 12, modified residue 7, strand 7, compositionally biased region 4, chain 2, topological domain 2, turn 2, region of interest 2, initiator methionine 1, glycosylation site 1, transmembrane region 1
Structure
Experimental structures (PDB)
2 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5J1S | X-RAY DIFFRACTION | 1.4 |
| 5J1T | X-RAY DIFFRACTION | 1.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8NFQ8-F1 | 69.89 | 0.45 |
| AF-Q9H496-F1 | 63.86 | 0.00 |
Antibody-complex structures (SAbDab): 2 — 5J1S, 5J1T
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (7): 2, 13, 93, 120, 163, 176, 193
Glycosylation sites (1): 286
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 213 (showing top):
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, MAZ_Q6, GGGTGGRR_PAX4_03, OSWALD_HEMATOPOIETIC_STEM_CELL_IN_COLLAGEN_GEL_UP, GOBP_POSITIVE_REGULATION_OF_MOLECULAR_FUNCTION, FOSTER_TOLERANT_MACROPHAGE_UP, DOANE_RESPONSE_TO_ANDROGEN_DN, LIAO_METASTASIS, TGANTCA_AP1_C, GOBP_ENDOMEMBRANE_SYSTEM_ORGANIZATION, DODD_NASOPHARYNGEAL_CARCINOMA_UP, GOBP_PROTEIN_LOCALIZATION_TO_ORGANELLE, IK2_01, GOBP_REGULATION_OF_ATP_DEPENDENT_ACTIVITY, GOBP_MEMBRANE_ORGANIZATION
GO Biological Process (4): endoplasmic reticulum organization (GO:0007029), positive regulation of ATP-dependent activity (GO:0032781), membrane organization (GO:0061024), protein localization to nuclear envelope (GO:0090435)
GO Molecular Function (3): ATPase activator activity (GO:0001671), ATPase binding (GO:0051117), protein binding (GO:0005515)
GO Cellular Component (6): endoplasmic reticulum (GO:0005783), endoplasmic reticulum membrane (GO:0005789), membrane (GO:0016020), nuclear membrane (GO:0031965), nucleus (GO:0005634), endomembrane system (GO:0012505)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| ATP-dependent activity | 2 |
| intracellular membrane-bounded organelle | 2 |
| organelle membrane | 2 |
| cellular anatomical structure | 2 |
| organelle organization | 1 |
| endomembrane system organization | 1 |
| regulation of ATP-dependent activity | 1 |
| positive regulation of molecular function | 1 |
| cellular component organization | 1 |
| protein localization to nucleus | 1 |
| molecular function activator activity | 1 |
| enzyme binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| endomembrane system | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| nucleus | 1 |
| nuclear envelope | 1 |
| vacuole | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
758 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TOR1AIP2 | TOR1A | O14656 | 983 |
| TOR1AIP2 | TOR1B | O14657 | 870 |
| TOR1AIP2 | TOR3A | Q9H497 | 673 |
| TOR1AIP2 | TOR2A | Q5JU69 | 654 |
| TOR1AIP2 | SUN2 | Q9UH99 | 643 |
| TOR1AIP2 | SUN1 | O94901 | 522 |
| TOR1AIP2 | C6orf52 | Q5T4I8 | 484 |
| TOR1AIP2 | TDRD5 | Q8NAT2 | 482 |
| TOR1AIP2 | SNAPIN | O95295 | 480 |
| TOR1AIP2 | FAM163A | Q96GL9 | 468 |
| TOR1AIP2 | CEP350 | Q5VT06 | 464 |
| TOR1AIP2 | TM7SF2 | O76062 | 461 |
| TOR1AIP2 | LRRC7 | Q96NW7 | 446 |
| TOR1AIP2 | TOR4A | Q9NXH8 | 439 |
| TOR1AIP2 | SCCPDH | Q8NBX0 | 418 |
IntAct
92 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TOR1A | TOR1AIP2 | psi-mi:“MI:0915”(physical association) | 0.810 |
| TOR1A | TOR1AIP2 | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| TOR1AIP2 | TOR1A | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| RAB15 | RAP1GDS1 | psi-mi:“MI:0914”(association) | 0.640 |
| CANX | PGRMC1 | psi-mi:“MI:0914”(association) | 0.570 |
| TOR1AIP2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.530 |
| RPS2 | MPHOSPH10 | psi-mi:“MI:0914”(association) | 0.530 |
| ABHD18 | HSPD1 | psi-mi:“MI:0914”(association) | 0.530 |
| FAM174A | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| APLNR | SLC33A1 | psi-mi:“MI:0914”(association) | 0.530 |
| TOR1A | TOR1B | psi-mi:“MI:0914”(association) | 0.530 |
| TIMP3 | ZZEF1 | psi-mi:“MI:0914”(association) | 0.530 |
| ARL6 | SART1 | psi-mi:“MI:0914”(association) | 0.510 |
| NRAS | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.480 |
| TOR1A | psi-mi:“MI:0882”(atpase reaction) | 0.440 | |
| TOR1B | psi-mi:“MI:0882”(atpase reaction) | 0.440 | |
| TOR1AIP2 | psi-mi:“MI:0882”(atpase reaction) | 0.440 | |
| PGRMC1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (777): TOR1AIP2 (Two-hybrid), TOR1B (Affinity Capture-Western), TOR1AIP2 (Reconstituted Complex), TOR1AIP2 (Affinity Capture-Western), TOR1A (Affinity Capture-Western), TOR1AIP2 (Co-purification), TOR1AIP2 (Affinity Capture-Western), TOR1AIP2 (Proximity Label-MS), TOR1AIP2 (Proximity Label-MS), TOR1AIP2 (Affinity Capture-MS), TOR1AIP2 (Proximity Label-MS), TOR1AIP2 (Affinity Capture-MS), SH3BP4 (Affinity Capture-MS), MCU (Affinity Capture-MS), TOR1AIP2 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8HTT5, A1A4L4, A6QLD2, A8T6P4, F1N4E5, O02776, O35144, O60303, O88622, O94901, Q1LVK9, Q2M243, Q3UH68, Q3UQI9, Q3V0J1, Q4G0A6, Q5BLK4, Q5JTV8, Q5PQX1, Q5R7A3, Q5RF72, Q5RJ80, Q61029, Q6A037, Q6IRU7, Q6P1H6, Q6P752, Q71M44, Q76LL6, Q76N89, Q7T3T8, Q7T3T9, Q7TNY7, Q7TP65, Q80VH0, Q86W56, Q86XL3, Q8BVV7, Q8BYU6, Q8K3I4
Diamond homologs: F1N4E5, Q5JTV8, Q5PQX1, Q5R7A3, Q6P752, Q8BYU6, Q8NFQ8, Q921T2
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 103 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Cargo trafficking to the periciliary membrane | 5 | 17.2× | 4e-04 |
| Aggrephagy | 5 | 17.2× | 4e-04 |
| HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand | 5 | 13.4× | 8e-04 |
| Translocation of SLC2A4 (GLUT4) to the plasma membrane | 6 | 12.9× | 4e-04 |
| Autophagy | 5 | 10.3× | 1e-03 |
| Cilium Assembly | 6 | 9.1× | 8e-04 |
| Macroautophagy | 5 | 8.0× | 3e-03 |
| Neurotransmitter receptors and postsynaptic signal transmission | 5 | 7.0× | 4e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
20 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 2 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 253059 | NM_015602.4(TOR1AIP1):c.186del (p.Glu62fs) | Pathogenic |
SpliceAI
704 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:179877691:A:AC | donor_gain | 1.0000 |
| 1:179877692:C:CC | donor_gain | 1.0000 |
| 1:179877692:CA:C | donor_gain | 0.9900 |
| 1:179877692:CAA:C | donor_gain | 0.9900 |
| 1:179882977:GGTGA:G | donor_loss | 0.9900 |
| 1:179882979:T:G | donor_loss | 0.9900 |
| 1:179877687:A:AC | donor_gain | 0.9800 |
| 1:179877687:ACTT:A | donor_loss | 0.9800 |
| 1:179877688:C:CC | donor_gain | 0.9800 |
| 1:179877689:TTACA:T | donor_loss | 0.9800 |
| 1:179877691:ACAA:A | donor_loss | 0.9800 |
| 1:179877692:CAAA:C | donor_gain | 0.9800 |
| 1:179877692:CAAAT:C | donor_gain | 0.9800 |
| 1:179882947:A:T | donor_gain | 0.9800 |
| 1:179876207:A:C | acceptor_gain | 0.9700 |
| 1:179877684:TTTAC:T | donor_loss | 0.9600 |
| 1:179877685:TTAC:T | donor_loss | 0.9600 |
| 1:179877686:TAC:T | donor_loss | 0.9600 |
| 1:179865570:CT:C | donor_gain | 0.9500 |
| 1:179876206:CA:C | acceptor_gain | 0.9500 |
| 1:179882794:G:GT | donor_gain | 0.9500 |
| 1:179864981:A:T | acceptor_gain | 0.9400 |
| 1:179882974:GAAG:G | donor_gain | 0.9400 |
| 1:179864980:C:CT | acceptor_gain | 0.9300 |
| 1:179865569:A:AC | donor_gain | 0.9300 |
| 1:179865570:C:CC | donor_gain | 0.9300 |
| 1:179865570:CTCTG:C | donor_gain | 0.9200 |
| 1:179876205:CCA:C | acceptor_gain | 0.9200 |
| 1:179882489:C:G | donor_gain | 0.9100 |
| 1:179882990:G:GT | donor_gain | 0.9100 |
AlphaMissense
3113 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:179846145:A:G | W447R | 0.998 |
| 1:179846145:A:T | W447R | 0.998 |
| 1:179846114:A:T | V457D | 0.997 |
| 1:179846143:C:A | W447C | 0.997 |
| 1:179846143:C:G | W447C | 0.997 |
| 1:179846317:A:C | F389L | 0.997 |
| 1:179846317:A:T | F389L | 0.997 |
| 1:179846319:A:G | F389L | 0.997 |
| 1:179846336:T:A | D383V | 0.997 |
| 1:179846338:A:C | C382W | 0.997 |
| 1:179846339:C:T | C382Y | 0.997 |
| 1:179846399:G:T | A362D | 0.997 |
| 1:179846147:A:G | L446P | 0.996 |
| 1:179846324:G:T | A387D | 0.996 |
| 1:179846342:T:C | Y381C | 0.996 |
| 1:179846343:A:G | Y381H | 0.996 |
| 1:179846432:A:G | L351P | 0.996 |
| 1:179846120:A:G | L455P | 0.995 |
| 1:179846138:C:G | R449P | 0.995 |
| 1:179846140:G:C | S448R | 0.995 |
| 1:179846140:G:T | S448R | 0.995 |
| 1:179846142:T:G | S448R | 0.995 |
| 1:179846150:C:T | G445E | 0.995 |
| 1:179846291:A:T | V398D | 0.995 |
| 1:179846336:T:G | D383A | 0.995 |
| 1:179846351:A:G | F378S | 0.995 |
| 1:179846400:C:G | A362P | 0.995 |
| 1:179846452:C:A | K344N | 0.995 |
| 1:179846452:C:G | K344N | 0.995 |
| 1:179846548:G:C | S312R | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000055442 (1:179861835 C>T), RS1000060533 (1:179874355 A>C,G), RS1000338573 (1:179859949 A>C), RS1000363898 (1:179840579 T>G), RS1000376794 (1:179878481 C>T), RS1000410552 (1:179873947 T>C), RS1000416229 (1:179841098 C>T), RS1000429316 (1:179878820 G>A,C,T), RS1000447236 (1:179863676 G>A,C), RS1000470989 (1:179878941 G>C), RS1000979023 (1:179866700 C>T), RS1000995572 (1:179873866 T>C), RS1001044183 (1:179853312 T>C), RS1001050730 (1:179867000 G>C), RS1001171139 (1:179839549 C>T)
Disease associations
OMIM: gene MIM:614513 | disease phenotypes: MIM:617072
GenCC curated gene-disease
Mondo (1): autosomal recessive limb-girdle muscular dystrophy type 2Y (MONDO:0014900)
Orphanet (1): TOR1AIP1-related limb-girdle muscular dystrophy (Orphanet:424261)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010002_371 | Refractive error | 3.000000e-09 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
42 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects expression, increases expression | 2 |
| Air Pollutants | affects cotreatment, decreases expression, increases abundance | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| urushiol | increases expression | 1 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, decreases expression, increases abundance | 1 |
| bisphenol A | decreases expression | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | increases expression | 1 |
| coumarin | affects phosphorylation | 1 |
| methacrylaldehyde | increases abundance, affects cotreatment, decreases expression | 1 |
| 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine | increases expression | 1 |
| pentabromodiphenyl ether | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| (4-amino-1,4-dihydro-3-(2-pyridyl)-5-thioxo-1,2,4-triazole)copper(II) | decreases expression | 1 |
| Resveratrol | increases expression, affects cotreatment | 1 |
| Acrolein | increases abundance, affects cotreatment, decreases expression | 1 |
| Air Pollutants, Occupational | decreases expression | 1 |
| Benzo(a)pyrene | increases mutagenesis | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Estradiol | increases expression | 1 |
| Hydrogen Peroxide | increases expression | 1 |
| Nickel | decreases expression | 1 |
| Ozone | affects cotreatment, decreases expression, increases abundance | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
1 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05989620 | Not specified | RECRUITING | Long-Term Development of Muscular Dystrophy Outcome Assessments |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive limb-girdle muscular dystrophy type 2Y