TPRKB
gene geneOn this page
Also known as CGI-121CGI121
Summary
TPRKB (TP53RK binding protein, HGNC:24259) is a protein-coding gene on chromosome 2p13.1, encoding EKC/KEOPS complex subunit TPRKB (Q9Y3C4). Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
Enables protein kinase binding activity. Involved in tRNA threonylcarbamoyladenosine modification. Located in cytosol and nucleus. Part of EKC/KEOPS complex. Implicated in Galloway-Mowat syndrome 5.
Source: NCBI Gene 51002 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Galloway-Mowat syndrome 5 (Strong, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 69 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 47
- Druggable target: yes
- MANE Select transcript:
NM_016058
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24259 |
| Approved symbol | TPRKB |
| Name | TP53RK binding protein |
| Location | 2p13.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CGI-121, CGI121 |
| Ensembl gene | ENSG00000144034 |
| Ensembl biotype | protein_coding |
| OMIM | 608680 |
| Entrez | 51002 |
Gene structure
Transcript identifiers
Ensembl transcripts: 49 — 42 protein_coding, 5 protein_coding_CDS_not_defined, 2 retained_intron
ENST00000272424, ENST00000318190, ENST00000409716, ENST00000462166, ENST00000463231, ENST00000470012, ENST00000484969, ENST00000485758, ENST00000489476, ENST00000497464, ENST00000904803, ENST00000904804, ENST00000904805, ENST00000904806, ENST00000904807, ENST00000904808, ENST00000904809, ENST00000904810, ENST00000904811, ENST00000939335, ENST00000939336, ENST00000939337, ENST00000939338, ENST00000939339, ENST00000939340, ENST00000939341, ENST00000939342, ENST00000939343, ENST00000939344, ENST00000939345, ENST00000939346, ENST00000939347, ENST00000939348, ENST00000939349, ENST00000939350, ENST00000939351, ENST00000939352, ENST00000939353, ENST00000939354, ENST00000939355, ENST00000939356, ENST00000939357, ENST00000939358, ENST00000939359, ENST00000939360, ENST00000939361, ENST00000939362, ENST00000939363, ENST00000965314
RefSeq mRNA: 8 — MANE Select: NM_016058
NM_001330386, NM_001330387, NM_001330388, NM_001330389, NM_001330390, NM_001330391, NM_001330392, NM_016058
CCDS: CCDS1927, CCDS82471
Canonical transcript exons
ENST00000272424 — 5 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000963339 | 73729873 | 73730029 |
| ENSE00003463429 | 73732163 | 73732285 |
| ENSE00003638996 | 73734429 | 73734591 |
| ENSE00003653356 | 73730560 | 73730736 |
| ENSE00003894433 | 73737302 | 73737345 |
Expression profiles
Bgee: expression breadth ubiquitous, 284 present calls, max score 97.38.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.0825 / max 448.9475, expressed in 1802 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 29146 | 22.9887 | 1800 |
| 202237 | 0.5721 | 363 |
| 29145 | 0.5217 | 296 |
Top tissues by expression
288 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 97.38 | gold quality |
| ganglionic eminence | UBERON:0004023 | 97.07 | gold quality |
| right testis | UBERON:0004534 | 95.86 | gold quality |
| monocyte | CL:0000576 | 95.82 | gold quality |
| left testis | UBERON:0004533 | 95.82 | gold quality |
| mononuclear cell | CL:0000842 | 95.78 | gold quality |
| embryo | UBERON:0000922 | 95.68 | gold quality |
| leukocyte | CL:0000738 | 95.43 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.33 | gold quality |
| ventricular zone | UBERON:0003053 | 95.29 | gold quality |
| cortical plate | UBERON:0005343 | 95.27 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.26 | gold quality |
| rectum | UBERON:0001052 | 95.20 | gold quality |
| muscle of leg | UBERON:0001383 | 95.19 | gold quality |
| left ovary | UBERON:0002119 | 95.16 | gold quality |
| right ovary | UBERON:0002118 | 95.10 | gold quality |
| testis | UBERON:0000473 | 94.83 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 94.71 | gold quality |
| muscle organ | UBERON:0001630 | 94.59 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.57 | gold quality |
| body of pancreas | UBERON:0001150 | 94.52 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 94.39 | gold quality |
| left uterine tube | UBERON:0001303 | 94.32 | gold quality |
| biceps brachii | UBERON:0001507 | 94.27 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 94.22 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 94.07 | gold quality |
| ovary | UBERON:0000992 | 94.02 | gold quality |
| cerebellar cortex | UBERON:0002129 | 94.00 | gold quality |
| triceps brachii | UBERON:0001509 | 93.81 | gold quality |
| body of uterus | UBERON:0009853 | 93.80 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-13 | yes | 20.52 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting TPRKB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-5700 | 99.64 | 69.88 | 2280 |
| HSA-MIR-2053 | 99.57 | 69.15 | 1635 |
| HSA-MIR-155-5P | 99.35 | 70.16 | 1509 |
Literature-anchored findings (GeneRIF, showing 2)
- Crystal structure of the human PRPK-TPRKB complex. (PMID:33547416)
- METTL5 enhances the mRNA stability of TPRKB through m[6]A modification to facilitate the aggressive phenotypes of hepatocellular carcinoma cell. (PMID:39182664)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | tprkb | ENSDARG00000014941 |
| mus_musculus | Tprkb | ENSMUSG00000054226 |
| rattus_norvegicus | Tprkb | ENSRNOG00000050645 |
| caenorhabditis_elegans | WBGENE00020994 |
Protein
Protein identifiers
EKC/KEOPS complex subunit TPRKB — Q9Y3C4 (reviewed: Q9Y3C4)
Alternative names: PRPK-binding protein, TP53RK-binding protein
All UniProt accessions (1): Q9Y3C4
UniProt curated annotations — full annotation on UniProt →
Function. Component of the EKC/KEOPS complex that is required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. The complex is probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. TPRKB acts as an allosteric effector that regulates the t(6)A activity of the complex. TPRKB is not required for tRNA modification.
Subunit / interactions. Component of the EKC/KEOPS complex composed of at least GON7, TP53RK, TPRKB, OSGEP and LAGE3; the whole complex dimerizes. Interacts with TP53RK/PRPK.
Subcellular location. Cytoplasm. Cytosol. Nucleus.
Tissue specificity. Widely expressed.
Disease relevance. Galloway-Mowat syndrome 5 (GAMOS5) [MIM:617731] A form of Galloway-Mowat syndrome, a severe renal-neurological disease characterized by early-onset nephrotic syndrome associated with microcephaly, central nervous system abnormalities, developmental delays, and a propensity for seizures. Brain anomalies include gyration defects ranging from lissencephaly to pachygyria and polymicrogyria, and cerebellar hypoplasia. Most patients show facial dysmorphism characterized by a small, narrow forehead, large/floppy ears, deep-set eyes, hypertelorism and micrognathia. Additional variable features are visual impairment and arachnodactyly. Most patients die in early childhood. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the CGI121/TPRKB family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y3C4-1 | 1 | yes |
| Q9Y3C4-2 | 2, S1 | |
| Q9Y3C4-3 | 3, L1 |
RefSeq proteins (8): NP_001317315, NP_001317316, NP_001317317, NP_001317318, NP_001317319, NP_001317320, NP_001317321, NP_057142* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR013926 | CGI121/TPRKB | Family |
| IPR036504 | CGI121/TPRKB_sf | Homologous_superfamily |
Pfam: PF08617
UniProt features (26 total): helix 12, strand 8, splice variant 2, sequence variant 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7SZC | X-RAY DIFFRACTION | 1.71 |
| 7SZA | X-RAY DIFFRACTION | 1.9 |
| 7SZB | X-RAY DIFFRACTION | 2.02 |
| 7SZD | X-RAY DIFFRACTION | 2.05 |
| 3ENP | X-RAY DIFFRACTION | 2.48 |
| 6WQX | X-RAY DIFFRACTION | 2.53 |
| 9FL9 | ELECTRON MICROSCOPY | 3.74 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y3C4-F1 | 95.47 | 0.91 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-6782315 | tRNA modification in the nucleus and cytosol |
MSigDB gene sets: 219 (showing top):
MODULE_151, GOBP_TRNA_METABOLIC_PROCESS, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_DN, GOBP_TRANSLATION, WEI_MYCN_TARGETS_WITH_E_BOX, GOBP_RNA_MODIFICATION, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4, GARCIA_TARGETS_OF_FLI1_AND_DAX1_DN, BASAKI_YBX1_TARGETS_UP, GOBP_TRNA_THREONYLCARBAMOYLADENOSINE_METABOLIC_PROCESS, GOBP_TRNA_PROCESSING, MODULE_114, REACTOME_METABOLISM_OF_RNA, GOBP_TRNA_MODIFICATION
GO Biological Process (2): tRNA threonylcarbamoyladenosine modification (GO:0002949), tRNA processing (GO:0008033)
GO Molecular Function (2): protein kinase binding (GO:0019901), protein binding (GO:0005515)
GO Cellular Component (4): EKC/KEOPS complex (GO:0000408), nucleus (GO:0005634), cytoplasm (GO:0005737), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| tRNA processing | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| tRNA modification | 1 |
| RNA processing | 1 |
| tRNA metabolic process | 1 |
| kinase binding | 1 |
| binding | 1 |
| transferase complex | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
1286 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TPRKB | TP53RK | Q96S44 | 999 |
| TPRKB | OSGEP | Q9NPF4 | 998 |
| TPRKB | LAGE3 | Q14657 | 998 |
| TPRKB | GON7 | Q9BXV9 | 991 |
| TPRKB | YRDC | Q86U90 | 874 |
| TPRKB | OSGEPL1 | Q9H4B0 | 872 |
| TPRKB | BUD31 | P41223 | 526 |
| TPRKB | TP53 | P04637 | 492 |
| TPRKB | POLR1B | Q9H9Y6 | 398 |
| TPRKB | GNL2 | Q13823 | 373 |
| TPRKB | POLR1D | P0DPB6 | 370 |
| TPRKB | RAD52 | P43351 | 367 |
| TPRKB | SH2D2A | Q9NP31 | 358 |
| TPRKB | DDX5 | P17844 | 353 |
| TPRKB | HTRA3 | P83110 | 353 |
| TPRKB | TCP1 | P17987 | 353 |
| TPRKB | F6RGN5 | F6RGN5 | 353 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| UBA5 | GABARAPL2 | psi-mi:“MI:0914”(association) | 0.950 |
| CPSF6 | NUDT21 | psi-mi:“MI:0914”(association) | 0.890 |
| GON7 | LAGE3 | psi-mi:“MI:0915”(physical association) | 0.880 |
| GON7 | LAGE3 | psi-mi:“MI:0914”(association) | 0.880 |
| TPRKB | TP53RK | psi-mi:“MI:0915”(physical association) | 0.850 |
| TP53RK | TPRKB | psi-mi:“MI:0915”(physical association) | 0.850 |
| TP53RK | GON7 | psi-mi:“MI:0914”(association) | 0.820 |
| TP53RK | NUP43 | psi-mi:“MI:0914”(association) | 0.730 |
| NUP43 | NUP98 | psi-mi:“MI:0914”(association) | 0.640 |
| TPRKB | TRIM27 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIM27 | TPRKB | psi-mi:“MI:0915”(physical association) | 0.560 |
| POP7 | RPP40 | psi-mi:“MI:0914”(association) | 0.530 |
| NUP43 | KIF5B | psi-mi:“MI:0914”(association) | 0.530 |
| ANO4 | ANO6 | psi-mi:“MI:0914”(association) | 0.530 |
| GORASP1 | PPP6R2 | psi-mi:“MI:0914”(association) | 0.530 |
| LAGE3 | CTSA | psi-mi:“MI:0914”(association) | 0.530 |
| MBIP | TADA2A | psi-mi:“MI:0914”(association) | 0.530 |
| TPRKB | H1-5 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TPRKB | E6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| Osgep | RPSA | psi-mi:“MI:0914”(association) | 0.350 |
| TP53RK | CLTB | psi-mi:“MI:0914”(association) | 0.350 |
| POLR3E | BDP1 | psi-mi:“MI:0914”(association) | 0.350 |
| MBIP | CIBAR1 | psi-mi:“MI:0914”(association) | 0.350 |
| LAGE3 | HYKK | psi-mi:“MI:0914”(association) | 0.350 |
| OSGEP | HYKK | psi-mi:“MI:0914”(association) | 0.350 |
| MSH5 | GET1 | psi-mi:“MI:0914”(association) | 0.350 |
| GORASP1 | RTCA | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (99): TPRKB (Two-hybrid), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TP53RK (Two-hybrid), TPRKB (Affinity Capture-Western), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS), TPRKB (Affinity Capture-MS)
ESM2 similar proteins: A1RWX0, A2SFM8, A6MMC5, A6MMU7, B0BSZ8, B1I710, B2IRP8, B2XWK7, B5E6S0, B8ZM41, C1C8N4, C1CFL4, C3MUV8, C3N5H2, C4K473, C4KH38, O01374, O33510, O33543, O33544, O33575, O78442, P06942, P18611, P30879, P32285, P35976, P52201, Q04JC5, Q09MH5, Q0G9L6, Q10735, Q21U90, Q2MI39, Q2MIE3, Q2VED6, Q32RZ2, Q3C1N3, Q491W4, Q5BB99
Diamond homologs: A1CEY5, F1QZ15, Q03705, Q0C9R3, Q0UEM3, Q1DYR7, Q4ID21, Q4WI37, Q5PQR8, Q6BP94, Q6C7C9, Q6CT72, Q75D21, Q7SHG9, Q8QZZ7, Q9P7J3, Q9Y3C4, P0CM64, P0CM65, Q4P144, Q5A519, Q6FV72
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
69 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 42 |
| Likely benign | 8 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 444885 | NM_016058.5(TPRKB):c.446A>G (p.Tyr149Cys) | Pathogenic |
| 3065453 | NM_016058.5(TPRKB):c.445T>A (p.Tyr149Asn) | Likely pathogenic |
SpliceAI
0 predictions. Top by Δscore:
AlphaMissense
1141 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:73732246:C:G | A61P | 0.973 |
| 2:73729955:T:A | K172N | 0.969 |
| 2:73729955:T:G | K172N | 0.969 |
| 2:73732179:A:G | L83P | 0.963 |
| 2:73730713:A:C | F96L | 0.962 |
| 2:73730713:A:T | F96L | 0.962 |
| 2:73730715:A:G | F96L | 0.962 |
| 2:73732257:G:T | A57E | 0.962 |
| 2:73729956:T:A | K172I | 0.959 |
| 2:73732194:T:A | E78V | 0.956 |
| 2:73732245:G:T | A61E | 0.952 |
| 2:73732266:A:T | I54K | 0.938 |
| 2:73732193:T:A | E78D | 0.931 |
| 2:73732193:T:G | E78D | 0.931 |
| 2:73730727:C:G | A92P | 0.930 |
| 2:73730684:A:G | L106P | 0.925 |
| 2:73730711:C:T | G97D | 0.924 |
| 2:73730735:A:G | I89T | 0.923 |
| 2:73732212:G:A | T72I | 0.921 |
| 2:73730723:A:G | L93S | 0.916 |
| 2:73732266:A:C | I54R | 0.914 |
| 2:73730619:C:G | G128R | 0.912 |
| 2:73732247:T:A | K60N | 0.910 |
| 2:73732247:T:G | K60N | 0.910 |
| 2:73732255:C:G | A58P | 0.910 |
| 2:73734510:A:C | F20L | 0.910 |
| 2:73734510:A:T | F20L | 0.910 |
| 2:73734512:A:G | F20L | 0.910 |
| 2:73729967:T:A | R168S | 0.909 |
| 2:73729967:T:G | R168S | 0.909 |
dbSNP variants (sampled 300 via entrez): RS1000474066 (2:73737689 G>A), RS1000525991 (2:73737938 C>A,T), RS1000983296 (2:73731853 G>A), RS1000993173 (2:73731586 C>G), RS1001546679 (2:73737421 T>A,C,G), RS1001693284 (2:73731140 T>C), RS1001742641 (2:73730909 C>A,G), RS1001874597 (2:73732017 C>A,T), RS1001886646 (2:73737616 T>C), RS1002636907 (2:73735452 G>A), RS1002694801 (2:73729455 A>C), RS1002818821 (2:73733567 T>G), RS1002898375 (2:73732463 G>C), RS1002973647 (2:73735728 C>A), RS1003562366 (2:73738975 A>G)
Disease associations
OMIM: gene MIM:608680 | disease phenotypes: MIM:617731
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Galloway-Mowat syndrome 5 | Strong | Autosomal recessive |
| Galloway-Mowat syndrome | Supportive | Autosomal recessive |
Mondo (3): Galloway-Mowat syndrome 5 (MONDO:0033009), nephrotic syndrome (MONDO:0005377), Galloway-Mowat syndrome (MONDO:0009627)
Orphanet (0):
HPO phenotypes
47 total (30 of 47 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000093 | Proteinuria |
| HP:0000097 | Focal segmental glomerulosclerosis |
| HP:0000100 | Nephrotic syndrome |
| HP:0000112 | Nephropathy |
| HP:0000164 | Abnormality of the dentition |
| HP:0000252 | Microcephaly |
| HP:0000276 | Long face |
| HP:0000286 | Epicanthus |
| HP:0000303 | Mandibular prognathia |
| HP:0000316 | Hypertelorism |
| HP:0000347 | Micrognathia |
| HP:0000365 | Hearing impairment |
| HP:0000400 | Macrotia |
| HP:0000490 | Deeply set eye |
| HP:0000601 | Hypotelorism |
| HP:0000969 | Edema |
| HP:0001181 | Adducted thumb |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001276 | Hypertonia |
| HP:0001302 | Pachygyria |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001622 | Premature birth |
| HP:0002036 | Hiatus hernia |
| HP:0002119 | Ventriculomegaly |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009404 | Nephrotic Syndrome | C12.050.351.968.419.630.643; C12.200.777.419.630.643; C12.950.419.630.643 |
| C537548 | Galloway Mowat syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL6066493 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
2 potent at pChembl≥5 of 4 total, top 2 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.28 | Kd | 521 | nM | CHEMBL5653589 |
| 6.26 | ED50 | 550.3 | nM | CHEMBL5653589 |
PubChem BioAssay actives
1 with measured affinity, of 4 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2149648: Binding affinity to human TPRKB incubated for 45 mins by Kinobead based pull down assay | kd | 0.5210 | uM |
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance, increases expression | 3 |
| bisphenol A | decreases expression, decreases methylation | 2 |
| Air Pollutants | increases abundance, increases oxidation, decreases expression, affects cotreatment | 2 |
| Arsenic | affects cotreatment, increases abundance, increases expression, decreases expression | 2 |
| Valproic Acid | affects expression, increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, affects cotreatment | 2 |
| dicrotophos | decreases expression | 1 |
| alpha-pinene | increases abundance, affects cotreatment, increases oxidation | 1 |
| arsenite | affects binding, increases reaction | 1 |
| manganese chloride | affects cotreatment, increases abundance, increases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Vorinostat | increases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
| Copper | affects binding, decreases expression | 1 |
| Disulfiram | affects binding, decreases expression | 1 |
| Estradiol | decreases expression | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Manganese | affects cotreatment, increases abundance, increases expression | 1 |
| Ozone | affects cotreatment, increases oxidation, increases abundance | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Polycyclic Aromatic Hydrocarbons | affects cotreatment, decreases expression, increases abundance | 1 |
| Rotenone | decreases expression | 1 |
| Thimerosal | increases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5652690 | Binding | Binding affinity to human TPRKB incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Clinical trials (associated diseases)
104 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00308321 | PHASE4 | UNKNOWN | Long Term Tapering or Standard Steroids for Nephrotic Syndrome |
| NCT01021540 | PHASE4 | COMPLETED | Prospective Study Evaluating the Effect of Repository Corticotropin in the Treatment of Various Nephrotic Syndromes |
| NCT01028287 | PHASE4 | COMPLETED | Adrenocorticotropic Hormone (ACTH) Treatment of Nephrotic Range Proteinuria in Diabetic Nephropathy (NRDN) |
| NCT01162005 | PHASE4 | COMPLETED | Therapeutic Effect of Tacrolimus on Primary Nephrotic Syndrome in Children |
| NCT01895894 | PHASE4 | COMPLETED | Mycophenolate Mofetil in Pediatric Steroid Dependent Nephrotic Syndrome |
| NCT02238418 | PHASE4 | COMPLETED | Efficacy of Usual Vitamin D Supplementation and Its Impact on Children and Adolescents Calciuria. |
| NCT02382575 | PHASE4 | UNKNOWN | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Resistant Nephrotic Syndrome |
| NCT02427880 | PHASE4 | COMPLETED | Role of Acetazolamide and Hydrochlorothiazide Followed by Furosemide in Treating Nephrotic Edema |
| NCT03210688 | PHASE4 | COMPLETED | Active Vitamin D And Reduced Dose Prednisolone for Treatment in Minimal Change Nephropathy |
| NCT03347357 | PHASE4 | COMPLETED | Pharmacokinetics of Tacrolimus in Children |
| NCT05696977 | PHASE4 | UNKNOWN | Effect of Obesity on Cyclosporine Blood Trough Level in Nephrotic Syndrome Patients |
| NCT05966818 | PHASE4 | UNKNOWN | Effect of Dapagliflozin in Non-Diabetic Patients With Nephrotic Syndrome. |
| NCT06026787 | PHASE4 | COMPLETED | Clinical Value of Adding Dapagliflozin in Patients With Nephrotic Syndrome |
| NCT00354731 | PHASE3 | COMPLETED | Efficacy of Pentoxifylline on Primary Nephrotic Syndrome |
| NCT00615667 | PHASE3 | COMPLETED | Prospective, Multicenter Study of the Efficacy and Tolerance of Tacrolimus on Refractory Nephrotic Syndrome (RNS) |
| NCT00981838 | PHASE3 | COMPLETED | Rituximab in Multirelapsing Minimal Change Disease (MCD) or Focal Segmental Glomerulosclerosis (FSGS) |
| NCT01197040 | PHASE3 | COMPLETED | Evaluation of Low Dose Corticosteroids Efficiency, Associated With Myfortic ® in the Treatment of Nephrotic Syndrome |
| NCT01309477 | PHASE3 | COMPLETED | The Efficacy and Tolerance of Tacrolimus Sustained-release Capsules on Refractory Nephrotic Syndrome (RNS) |
| NCT02132195 | PHASE3 | COMPLETED | Adrenocorticotropic Hormone (ACTH) for Frequently Relapsing and Steroid Dependent Nephrotic Syndrome |
| NCT02257697 | PHASE3 | COMPLETED | A Study to Evaluate the Efficacy and Safety of Mizoribine in the Treatment of Refractory Nephrotic Syndrome |
| NCT02438982 | PHASE3 | COMPLETED | Efficacy and Safety of Rituximab to That of Calcineurin Inhibitors in Children With Steroid Dependent Nephrotic Syndrome |
| NCT03141970 | PHASE3 | COMPLETED | Prednisolone Trial in Children Younger Than 4 Years |
| NCT03501459 | PHASE3 | UNKNOWN | Lymphocyte Markers As Predictors Of Responsiveness To Rituximab Among Patients With Idiopathic Nephrotic Syndrome |
| NCT05079789 | PHASE3 | TERMINATED | Amiloride in Nephrotic Syndrome |
| NCT05716880 | PHASE3 | RECRUITING | Ketoanalogues for Muscle Mass Loss in Nephrotic Syndrome |
| NCT06635720 | PHASE3 | ACTIVE_NOT_RECRUITING | REduced-dose Steroid PrOtocol for Childhood Nephrotic SyndromE (RESPONSE) |
| NCT00001212 | PHASE2 | COMPLETED | Drug Therapy in Lupus Nephropathy |
| NCT00001959 | PHASE2 | COMPLETED | Pirfenidone to Treat Kidney Disease (Focal Segmental Glomerulosclerosis) |
| NCT00004466 | PHASE2 | TERMINATED | Pilot Study of Atorvastatin in Children With Chronic Hyperlipidemia Secondary to Nephrotic Syndrome |
| NCT00004990 | PHASE2 | COMPLETED | Once-A-Month Steroid Treatment for Patients With Focal Segmental Glomerulosclerosis |
| NCT00977977 | PHASE2 | RECRUITING | Rituximab Plus Cyclosporine in Idiopathic Membranous Nephropathy |
| NCT02394106 | PHASE2 | TERMINATED | Ofatumumab in Children With Drug Resistant Idiopathic Nephrotic Syndrome |
| NCT02394119 | PHASE2 | COMPLETED | Ofatumumab Versus Rituximab in Children With Steroid and Calcineurin Inhibitor Dependent Idiopathic Nephrotic Syndrome |
| NCT02592798 | PHASE2 | COMPLETED | Pilot Study to Evaluate the Safety and Efficacy of Abatacept in Adults and Children 6 Years and Older With Excessive Loss of Protein in the Urine Due to Either Focal Segmental Glomerulosclerosis (FSGS) or Minimal Change Disease (MCD) |
| NCT02966717 | PHASE2 | UNKNOWN | Rituximab Combined With MSCs in the Treatment of PNS (3-4 Stage of CKD) |
| NCT03004001 | PHASE2 | TERMINATED | Effect of PCSK9-Antibody (Alirocumab) on Dyslipidemia Secondary to Nephrotic Syndrome |
| NCT03949855 | PHASE2 | RECRUITING | Belimumab With Rituximab for Primary Membranous Nephropathy |
| NCT05599815 | PHASE2 | WITHDRAWN | Part 1 - A Clinical Trial in Patients With Frequently Relapsing and Steroid-Dependent Nephrotic Syndrome |
| NCT05704400 | PHASE2 | UNKNOWN | Efficacy of Anti-CD20 Ab Associated With Anti-CD38 in the Childhood Multidrug Dependent and Resistant Nephrotic Syndrome |
| NCT06983028 | PHASE2 | RECRUITING | Atacicept in Multiple Glomerular Diseases |
Related Atlas pages
- Associated diseases: Galloway-Mowat syndrome 5, Galloway-Mowat syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Galloway-Mowat syndrome, Galloway-Mowat syndrome 5, nephrotic syndrome