TRAPPC12-AS1

Summary

TRAPPC12-AS1 (TRAPPC12 antisense RNA 1, HGNC:41046) is a long non-coding RNA gene on chromosome 2p25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41046
Approved symbol	TRAPPC12-AS1
Name	TRAPPC12 antisense RNA 1
Location	2p25.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225234
Ensembl biotype	lncRNA
Entrez	100861515
RNAcentral	URS00025E355C — lncRNA, 4401 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000453806

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000453806 — 2 exons

Exon	Start	End
ENSE00001593980	3482146	3482409
ENSE00001595095	3481242	3481885

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 93.48.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.48	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.97	gold quality
right hemisphere of cerebellum	UBERON:0014890	81.94	gold quality
cerebellar hemisphere	UBERON:0002245	81.29	gold quality
cerebellum	UBERON:0002037	81.19	gold quality
cerebellar cortex	UBERON:0002129	81.17	gold quality
cortical plate	UBERON:0005343	79.66	gold quality
primary visual cortex	UBERON:0002436	75.62	gold quality
granulocyte	CL:0000094	75.06	gold quality
right frontal lobe	UBERON:0002810	73.59	gold quality
pituitary gland	UBERON:0000007	73.53	gold quality
adenohypophysis	UBERON:0002196	72.25	gold quality
ganglionic eminence	UBERON:0004023	71.54	gold quality
lower esophagus mucosa	UBERON:0035834	71.05	gold quality
right coronary artery	UBERON:0001625	70.72	gold quality
apex of heart	UBERON:0002098	70.61	gold quality
brain	UBERON:0000955	70.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	70.35	gold quality
superior frontal gyrus	UBERON:0002661	70.34	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	70.00	gold quality
frontal cortex	UBERON:0001870	69.81	gold quality
descending thoracic aorta	UBERON:0002345	69.59	gold quality
cerebral cortex	UBERON:0000956	69.43	gold quality
stromal cell of endometrium	CL:0002255	69.31	gold quality
anterior cingulate cortex	UBERON:0009835	69.17	gold quality
nucleus accumbens	UBERON:0001882	69.07	gold quality
right lobe of liver	UBERON:0001114	68.74	gold quality
ventricular zone	UBERON:0003053	68.47	gold quality
caudate nucleus	UBERON:0001873	68.32	gold quality
mucosa of transverse colon	UBERON:0004991	68.28	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.