TRAPPC14
geneOn this page
Also known as FLJ10925
Summary
TRAPPC14 (trafficking protein particle complex subunit 14, HGNC:25604) is a protein-coding gene on chromosome 7q22.1, encoding Trafficking protein particle complex subunit 14 (Q8WVR3). Specific subunit of the TRAPP (transport protein particle) II complex, a highly conserved vesicle tethering complex that functions in late Golgi trafficking as a membrane tether.
Enables alpha-tubulin binding activity. Involved in cilium assembly and regulation of cell population proliferation. Located in several cellular components, including microtubule cytoskeleton; midbody; and plasma membrane. Part of TRAPPII protein complex. Implicated in primary autosomal recessive microcephaly 25.
Source: NCBI Gene 55262 — RefSeq curated summary.
At a glance
- Gene–disease (curated): autosomal recessive primary microcephaly (Supportive, GenCC)
- GWAS associations: 8
- Clinical variants (ClinVar): 24 total — 1 pathogenic
- Phenotypes (HPO): 26
- MANE Select transcript:
NM_018275
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25604 |
| Approved symbol | TRAPPC14 |
| Name | trafficking protein particle complex subunit 14 |
| Location | 7q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ10925 |
| Ensembl gene | ENSG00000146826 |
| Ensembl biotype | protein_coding |
| OMIM | 618350 |
| Entrez | 55262 |
Gene structure
Transcript identifiers
Ensembl transcripts: 12 — 5 protein_coding, 4 nonsense_mediated_decay, 3 retained_intron
ENST00000316937, ENST00000394035, ENST00000419037, ENST00000419841, ENST00000448720, ENST00000456769, ENST00000457641, ENST00000470260, ENST00000472061, ENST00000498638, ENST00000950372, ENST00000950373
RefSeq mRNA: 2 — MANE Select: NM_018275
NM_001303470, NM_018275
CCDS: CCDS5687, CCDS78261
Canonical transcript exons
ENST00000316937 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000977581 | 100156386 | 100156549 |
| ENSE00001133319 | 100157843 | 100157938 |
| ENSE00001256353 | 100158089 | 100158723 |
| ENSE00003514065 | 100157373 | 100157459 |
| ENSE00003552586 | 100157094 | 100157214 |
| ENSE00003631654 | 100155671 | 100155825 |
| ENSE00003641453 | 100157633 | 100157762 |
| ENSE00003665601 | 100156634 | 100156716 |
| ENSE00003669291 | 100156845 | 100156992 |
| ENSE00003672975 | 100155262 | 100155455 |
| ENSE00003845176 | 100154423 | 100155164 |
Expression profiles
Bgee: expression breadth ubiquitous, 262 present calls, max score 96.11.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 21.8585 / max 352.0826, expressed in 1809 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 85164 | 21.8585 | 1809 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 96.11 | gold quality |
| granulocyte | CL:0000094 | 95.62 | gold quality |
| right testis | UBERON:0004534 | 94.35 | gold quality |
| left testis | UBERON:0004533 | 94.20 | gold quality |
| spleen | UBERON:0002106 | 94.04 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 93.63 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 93.10 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.01 | gold quality |
| blood | UBERON:0000178 | 92.51 | gold quality |
| metanephros cortex | UBERON:0010533 | 92.28 | gold quality |
| adenohypophysis | UBERON:0002196 | 92.26 | gold quality |
| transverse colon | UBERON:0001157 | 92.19 | gold quality |
| skin of abdomen | UBERON:0001416 | 92.16 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 91.98 | gold quality |
| cerebellum | UBERON:0002037 | 91.74 | gold quality |
| testis | UBERON:0000473 | 91.59 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 91.37 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 91.36 | silver quality |
| pituitary gland | UBERON:0000007 | 91.15 | gold quality |
| skin of leg | UBERON:0001511 | 91.11 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 91.09 | gold quality |
| lymph node | UBERON:0000029 | 90.95 | gold quality |
| body of stomach | UBERON:0001161 | 90.93 | gold quality |
| right frontal lobe | UBERON:0002810 | 89.98 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 89.95 | gold quality |
| small intestine | UBERON:0002108 | 89.86 | gold quality |
| esophagus mucosa | UBERON:0002469 | 89.76 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 89.51 | silver quality |
| minor salivary gland | UBERON:0001830 | 89.48 | gold quality |
| right lobe of liver | UBERON:0001114 | 89.30 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 2.73 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
58 targeting TRAPPC14, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-302A-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302B-3P | 99.89 | 71.23 | 1777 |
| HSA-MIR-302C-3P | 99.89 | 71.20 | 1778 |
| HSA-MIR-302D-3P | 99.89 | 71.25 | 1777 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6079 | 99.84 | 68.54 | 1170 |
| HSA-MIR-373-3P | 99.84 | 70.68 | 1668 |
| HSA-MIR-520E-3P | 99.84 | 70.55 | 1698 |
| HSA-MIR-372-3P | 99.83 | 70.58 | 1691 |
| HSA-MIR-520A-3P | 99.83 | 70.59 | 1687 |
| HSA-MIR-520B-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520C-3P | 99.83 | 70.56 | 1699 |
| HSA-MIR-520D-3P | 99.83 | 70.78 | 1676 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
Literature-anchored findings (GeneRIF, showing 1)
- C7orf43 directly binds to Rabin8 and that C7orf43 knockdown diminishes Rabin8 preciliary centrosome accumulation. (PMID:31467083)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | trappc14 | ENSDARG00000078891 |
| mus_musculus | Trappc14 | ENSMUSG00000036948 |
| rattus_norvegicus | Trappc14 | ENSRNOG00000039214 |
Protein
Protein identifiers
Trafficking protein particle complex subunit 14 — Q8WVR3 (reviewed: Q8WVR3)
Alternative names: Microtubule-associated protein 11
All UniProt accessions (6): Q8WVR3, B3KNS5, C9JMZ9, E9PFF9, F8WFE0, H7C1F8
UniProt curated annotations — full annotation on UniProt →
Function. Specific subunit of the TRAPP (transport protein particle) II complex, a highly conserved vesicle tethering complex that functions in late Golgi trafficking as a membrane tether. TRAPP II complex also has GEF activity toward RAB1A. TRAPPC14 is dispensable for TRAPPII complex integrity but mediates RAB3IP preciliary vesicle trafficking to the mother centriole during ciliogenesis. Modulates YAP1 activity as transcriptional regulator.
Subunit / interactions. Component of the multisubunit TRAPP II complex, which includes at least TRAPPC1, TRAPPC2, TRAPPC2L, TRAPPC3, TRAPPC4, TRAPPC5, TRAPPC6A/B, TRAPPC9, TRAPPC10 and TRAPPC14. TRAPPC9, TRAPPC10 and TRAPPC14 are specific subunits of the TRAPP II complex. Interacts with alpha-tubulin during mitosis. Interacts with RAB3IP (via the N-terminal region); this interaction mediates RAB3IP association with the TRAPP II complex. Interacts with TRAPPC10. Interacts with FBF1.
Subcellular location. Cytoplasm. Cytoskeleton. Spindle. Vesicle. Midbody.
Tissue specificity. Broadly expressed. High levels in brain, cerebellum, testis and whole blood.
Disease relevance. Microcephaly 25, primary, autosomal recessive (MCPH25) [MIM:618351] A form of microcephaly, a disease defined as a head circumference more than 3 standard deviations below the age, sex and ethnically matched mean. Brain weight is markedly reduced and the cerebral cortex is disproportionately small. MCPH25 patients additionally manifest global developmental delay, severe intellectual disability with speech impairment, attention deficit-hyperactivity disorder, and reduced white matter and thin corpus callosum on brain imaging. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WVR3-1 | 1 | yes |
| Q8WVR3-2 | 2 | |
| Q8WVR3-3 | 3 |
RefSeq proteins (2): NP_001290399, NP_060745* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR031626 | TRAPPC14 | Family |
| IPR055452 | TRAPP14_C | Domain |
| IPR055453 | TRAPP14_N | Domain |
Pfam: PF15806, PF23652
UniProt features (19 total): splice variant 5, modified residue 4, compositionally biased region 4, region of interest 2, sequence variant 2, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WVR3-F1 | 71.53 | 0.21 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (4): 546, 491, 517, 541
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 243 (showing top):
GCM_GSPT1, GOCC_MICROTUBULE_ORGANIZING_CENTER, GOBP_CILIUM_ORGANIZATION, GOCC_CENTROSOME, GOBP_ORGANELLE_ASSEMBLY, GCM_NUMA1, DOUGLAS_BMI1_TARGETS_DN, TGTTTAC_MIR30A5P_MIR30C_MIR30D_MIR30B_MIR30E5P, GCM_NF2, GOBP_CELL_PROJECTION_ORGANIZATION, DBP_Q6, GOCC_SPINDLE, GOCC_MITOTIC_SPINDLE, GOCC_MIDBODY, GOCC_CENTRIOLAR_SATELLITE
GO Biological Process (3): regulation of cell population proliferation (GO:0042127), cilium assembly (GO:0060271), cell projection organization (GO:0030030)
GO Molecular Function (2): alpha-tubulin binding (GO:0043014), protein binding (GO:0005515)
GO Cellular Component (9): plasma membrane (GO:0005886), midbody (GO:0030496), centriolar satellite (GO:0034451), mitotic spindle (GO:0072686), TRAPPII protein complex (GO:1990071), cytoplasm (GO:0005737), spindle (GO:0005819), cytoskeleton (GO:0005856), vesicle (GO:0031982)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| intracellular membraneless organelle | 2 |
| cell population proliferation | 1 |
| regulation of cellular process | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| cellular component organization | 1 |
| tubulin binding | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| centrosome | 1 |
| spindle | 1 |
| endosome | 1 |
| Golgi apparatus | 1 |
| TRAPP complex | 1 |
| intracellular anatomical structure | 1 |
| microtubule cytoskeleton | 1 |
| membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
410 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRAPPC14 | MAP10 | Q9P2G4 | 618 |
| TRAPPC14 | RAB3IP | Q96QF0 | 585 |
| TRAPPC14 | NCAPH | Q15003 | 538 |
| TRAPPC14 | ZNF335 | Q9H4Z2 | 527 |
| TRAPPC14 | ANKLE2 | Q86XL3 | 523 |
| TRAPPC14 | NUP37 | Q8NFH4 | 521 |
| TRAPPC14 | NCAPD3 | P42695 | 507 |
| TRAPPC14 | COPB2 | P35606 | 493 |
| TRAPPC14 | NCAPD2 | Q15021 | 467 |
| TRAPPC14 | KIF14 | Q15058 | 456 |
| TRAPPC14 | WDR62 | O43379 | 450 |
| TRAPPC14 | NAT16 | Q8N8M0 | 445 |
| TRAPPC14 | WDFY3 | Q8IZQ1 | 430 |
| TRAPPC14 | MAP4K4 | O95819 | 421 |
| TRAPPC14 | CEP152 | O94986 | 419 |
IntAct
75 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RUFY4 | NDC80 | psi-mi:“MI:0914”(association) | 0.830 |
| SART1 | PRPF6 | psi-mi:“MI:0914”(association) | 0.750 |
| SART1 | PRPF3 | psi-mi:“MI:0914”(association) | 0.720 |
| PTGR3 | DBT | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| KANK4 | TRAPPC3 | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.570 |
| TGM1 | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NOTCH2NLC | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| AGXT | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYSRT1 | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| VWC2 | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP6-1 | TRAPPC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAPPC2L | TRAPPC13 | psi-mi:“MI:0914”(association) | 0.560 |
| YWHAQ | IGLC7 | psi-mi:“MI:0914”(association) | 0.530 |
| TRAPPC1 | TRAPPC13 | psi-mi:“MI:0914”(association) | 0.530 |
| BCL2L14 | CHEK1 | psi-mi:“MI:0914”(association) | 0.530 |
| CABS1 | TRAPPC10 | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAB | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| M | NPEPPSL1 | psi-mi:“MI:0914”(association) | 0.350 |
| BCL2L14 | psi-mi:“MI:0914”(association) | 0.350 | |
| TRAPPC13 | psi-mi:“MI:0914”(association) | 0.350 | |
| TRAPPC5 | TRAPPC13 | psi-mi:“MI:0914”(association) | 0.350 |
| TRAPPC1 | TRAPPC13 | psi-mi:“MI:0914”(association) | 0.350 |
| GLB1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (53): C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS), C7orf43 (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JXN2, A2AWP8, O88842, O95267, P29590, P52734, P98174, Q1LY10, Q29RM4, Q2TBA3, Q3TAA7, Q3U0J8, Q3UTZ3, Q496Y0, Q4VX76, Q568M3, Q58D15, Q5BIM1, Q5JSP0, Q5R5M3, Q5R5T1, Q5REJ9, Q5W0U4, Q68FF6, Q69Z89, Q69ZK0, Q6PFY8, Q7TNM2, Q7Z4K8, Q7Z5H3, Q7Z6J4, Q80V85, Q8BY35, Q8BZ52, Q8C190, Q8N1F8, Q8TCU6, Q8WVR3, Q96JH8, Q99N48
Diamond homologs: E7F240, Q3UTZ3, Q8WVR3
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 59 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 5 | 84.0× | 5e-07 |
| COPII-mediated vesicle transport | 5 | 20.4× | 1e-04 |
| RAB GEFs exchange GTP for GDP on RABs | 6 | 18.6× | 3e-05 |
| G2/M DNA damage checkpoint | 6 | 18.0× | 3e-05 |
| Cell Cycle Checkpoints | 6 | 13.3× | 1e-04 |
| RHO GTPase Effectors | 6 | 10.2× | 4e-04 |
| Transcriptional Regulation by TP53 | 5 | 7.8× | 4e-03 |
| Signaling by Rho GTPases | 8 | 6.8× | 3e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| obsolete vesicle tethering | 6 | 114.4× | 1e-09 |
| endoplasmic reticulum to Golgi vesicle-mediated transport | 7 | 18.3× | 8e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
24 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 3 |
| Likely benign | 4 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 619595 | NM_018275.5(TRAPPC14):c.613G>T (p.Glu205Ter) | Pathogenic |
SpliceAI
1501 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:100155256:CTGTA:C | donor_loss | 1.0000 |
| 7:100155257:TGTA:T | donor_loss | 1.0000 |
| 7:100155258:GTAC:G | donor_loss | 1.0000 |
| 7:100155259:TAC:T | donor_loss | 1.0000 |
| 7:100155260:A:AC | donor_gain | 1.0000 |
| 7:100155261:C:A | donor_loss | 1.0000 |
| 7:100155261:C:CC | donor_gain | 1.0000 |
| 7:100155261:CCT:C | donor_gain | 1.0000 |
| 7:100155451:CTTAG:C | acceptor_gain | 1.0000 |
| 7:100155452:TTAG:T | acceptor_gain | 1.0000 |
| 7:100155453:TAG:T | acceptor_gain | 1.0000 |
| 7:100155454:AG:A | acceptor_gain | 1.0000 |
| 7:100155456:C:CC | acceptor_gain | 1.0000 |
| 7:100155457:T:C | acceptor_loss | 1.0000 |
| 7:100155666:CCCA:C | donor_loss | 1.0000 |
| 7:100155667:CCAC:C | donor_loss | 1.0000 |
| 7:100155668:CAC:C | donor_loss | 1.0000 |
| 7:100155669:A:C | donor_loss | 1.0000 |
| 7:100155685:T:TA | donor_gain | 1.0000 |
| 7:100155686:C:A | donor_gain | 1.0000 |
| 7:100155730:T:TA | donor_gain | 1.0000 |
| 7:100155826:C:CC | acceptor_gain | 1.0000 |
| 7:100155826:CT:C | acceptor_loss | 1.0000 |
| 7:100155827:T:A | acceptor_loss | 1.0000 |
| 7:100156384:ACCAG:A | donor_gain | 1.0000 |
| 7:100156385:CCAG:C | donor_gain | 1.0000 |
| 7:100156385:CCAGC:C | donor_gain | 1.0000 |
| 7:100156712:AGGCC:A | acceptor_gain | 1.0000 |
| 7:100156713:GGCC:G | acceptor_gain | 1.0000 |
| 7:100156714:GCC:G | acceptor_gain | 1.0000 |
AlphaMissense
3695 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:100155050:C:A | K568N | 1.000 |
| 7:100155050:C:G | K568N | 1.000 |
| 7:100155297:G:C | F518L | 1.000 |
| 7:100155297:G:T | F518L | 1.000 |
| 7:100155299:A:G | F518L | 1.000 |
| 7:100155430:A:G | L474P | 1.000 |
| 7:100155436:A:G | L472P | 1.000 |
| 7:100155698:G:C | F456L | 1.000 |
| 7:100155698:G:T | F456L | 1.000 |
| 7:100155699:A:G | F456S | 1.000 |
| 7:100155700:A:G | F456L | 1.000 |
| 7:100155766:A:G | C434R | 1.000 |
| 7:100156410:A:G | W406R | 1.000 |
| 7:100156410:A:T | W406R | 1.000 |
| 7:100156463:A:T | V388D | 1.000 |
| 7:100156683:A:G | W343R | 1.000 |
| 7:100156683:A:T | W343R | 1.000 |
| 7:100157889:A:G | L154P | 1.000 |
| 7:100157894:G:C | F152L | 1.000 |
| 7:100157894:G:T | F152L | 1.000 |
| 7:100157895:A:G | F152S | 1.000 |
| 7:100157896:A:G | F152L | 1.000 |
| 7:100157898:A:T | I151N | 1.000 |
| 7:100158357:A:G | L48P | 1.000 |
| 7:100158363:A:G | F46S | 1.000 |
| 7:100158378:C:A | G41V | 1.000 |
| 7:100158378:C:T | G41E | 1.000 |
| 7:100158379:C:A | G41W | 1.000 |
| 7:100158379:C:G | G41R | 1.000 |
| 7:100158379:C:T | G41R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000062003 (7:100158471 TA>T), RS1000622990 (7:100159645 G>T), RS1001224117 (7:100154797 C>T), RS1001296171 (7:100154924 C>T), RS1002225274 (7:100156135 A>G), RS1003959439 (7:100158832 C>G), RS1003985598 (7:100154662 C>G), RS1004022862 (7:100154876 CA>C), RS1004304078 (7:100159509 G>A), RS1004359507 (7:100159250 T>A,G), RS1005470605 (7:100154100 G>A), RS1005821422 (7:100158021 T>G), RS1005868398 (7:100154344 A>G), RS1006921376 (7:100155351 A>G), RS1007871544 (7:100157237 C>T)
Disease associations
OMIM: gene MIM:618350 | disease phenotypes: MIM:618351
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive primary microcephaly | Supportive | Autosomal recessive |
Mondo (2): microcephaly 25, primary, autosomal recessive (MONDO:0032694), autosomal recessive primary microcephaly (MONDO:0016660)
Orphanet (0):
HPO phenotypes
26 total (26 of 26 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000076 | Vesicoureteral reflux |
| HP:0000122 | Unilateral renal agenesis |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000252 | Microcephaly |
| HP:0000340 | Sloping forehead |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000750 | Delayed speech and language development |
| HP:0001249 | Intellectual disability |
| HP:0001263 | Global developmental delay |
| HP:0001274 | Agenesis of corpus callosum |
| HP:0001302 | Pachygyria |
| HP:0001347 | Hyperreflexia |
| HP:0001510 | Growth delay |
| HP:0002079 | Hypoplasia of the corpus callosum |
| HP:0002119 | Ventriculomegaly |
| HP:0002144 | Tethered cord |
| HP:0002282 | Gray matter heterotopia |
| HP:0003103 | Abnormal cortical bone morphology |
| HP:0003577 | Congenital onset |
| HP:0004322 | Short stature |
| HP:0007018 | Attention deficit hyperactivity disorder |
| HP:0007333 | Hypoplasia of the frontal lobes |
| HP:0010864 | Severe intellectual disability |
| HP:0011451 | Primary microcephaly |
| HP:6000184 | Filum terminale lipoma |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005845_4 | Heart rate increase in response to exercise | 3.000000e-16 |
| GCST005846_7 | Heart rate response to recovery post exercise (10 sec) | 6.000000e-21 |
| GCST005847_9 | Heart rate response to recovery post exercise (20 sec) | 3.000000e-21 |
| GCST005848_15 | Heart rate response to recovery post exercise (50 sec) | 4.000000e-23 |
| GCST005849_14 | Heart rate response to recovery post exercise (40 sec) | 6.000000e-24 |
| GCST005850_6 | Heart rate response to recovery post exercise (30 sec) | 8.000000e-23 |
| GCST010702_48 | Subcortical volume (MOSTest) | 6.000000e-10 |
| GCST010703_289 | Brain morphology (MOSTest) | 6.000000e-15 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009184 | heart rate response to exercise |
| EFO:0009185 | heart rate response to recovery post exercise |
| EFO:0004346 | neuroimaging measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| C579935 | Autosomal Recessive Primary Microcephaly (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
15 total (human), top 15 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| FR900359 | affects phosphorylation | 1 |
| sodium arsenite | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| abrine | increases expression | 1 |
| licochalcone B | increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Caffeine | decreases phosphorylation | 1 |
| Doxorubicin | decreases expression | 1 |
| Selenium | increases expression | 1 |
| Smoke | decreases expression | 1 |
| Testosterone | increases expression | 1 |
| Tobacco Smoke Pollution | affects expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Cyclosporine | increases expression | 1 |
| Okadaic Acid | increases expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: autosomal recessive primary microcephaly
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal recessive primary microcephaly, microcephaly 25, primary, autosomal recessive