TRHDE
gene geneOn this page
Also known as PGPEP2TRH-DEPAP-II
Summary
TRHDE (thyrotropin releasing hormone degrading enzyme, HGNC:30748) is a protein-coding gene on chromosome 12q21.1, encoding Thyrotropin-releasing hormone-degrading ectoenzyme (Q9UKU6). Specific inactivation of TRH after its release.
This gene encodes a member of the peptidase M1 family. The encoded protein is an extracellular peptidase that specifically cleaves and inactivates the neuropeptide thyrotropin-releasing hormone.
Source: NCBI Gene 29953 — RefSeq curated summary.
At a glance
- GWAS associations: 7
- Clinical variants (ClinVar): 129 total
- Druggable target: yes
- MANE Select transcript:
NM_013381
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:30748 |
| Approved symbol | TRHDE |
| Name | thyrotropin releasing hormone degrading enzyme |
| Location | 12q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PGPEP2, TRH-DE, PAP-II |
| Ensembl gene | ENSG00000072657 |
| Ensembl biotype | protein_coding |
| OMIM | 606950 |
| Entrez | 29953 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 4 protein_coding_CDS_not_defined, 2 protein_coding, 1 retained_intron
ENST00000261180, ENST00000547300, ENST00000548156, ENST00000549138, ENST00000549401, ENST00000549922, ENST00000552503
RefSeq mRNA: 1 — MANE Select: NM_013381
NM_013381
CCDS: CCDS9004
Canonical transcript exons
ENST00000261180 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000752414 | 72473067 | 72473180 |
| ENSE00000911441 | 72499498 | 72499635 |
| ENSE00000911442 | 72542291 | 72542356 |
| ENSE00000937466 | 72272370 | 72273557 |
| ENSE00000993940 | 72653016 | 72653156 |
| ENSE00000993941 | 72621644 | 72621751 |
| ENSE00000993942 | 72621108 | 72621205 |
| ENSE00000993943 | 72656927 | 72657008 |
| ENSE00000993944 | 72652322 | 72652489 |
| ENSE00001236769 | 72663052 | 72670758 |
| ENSE00003488526 | 72618891 | 72619038 |
| ENSE00003510891 | 72469758 | 72469912 |
| ENSE00003519354 | 72377995 | 72378121 |
| ENSE00003521609 | 72562165 | 72562230 |
| ENSE00003552303 | 72568568 | 72568656 |
| ENSE00003593892 | 72562853 | 72563040 |
| ENSE00003595483 | 72575255 | 72575388 |
| ENSE00003667127 | 72575487 | 72575542 |
| ENSE00003671122 | 72286681 | 72286954 |
Expression profiles
Bgee: expression breadth ubiquitous, 201 present calls, max score 91.41.
FANTOM5 (CAGE): breadth broad, TPM avg 2.9726 / max 234.1410, expressed in 694 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 126857 | 1.1253 | 460 |
| 126859 | 0.5911 | 229 |
| 126858 | 0.4923 | 213 |
| 126860 | 0.3129 | 137 |
| 126861 | 0.1849 | 83 |
| 126866 | 0.1369 | 63 |
| 126868 | 0.0755 | 29 |
| 126867 | 0.0410 | 13 |
| 126847 | 0.0106 | 3 |
| 126848 | 0.0021 | 2 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| jejunal mucosa | UBERON:0000399 | 91.41 | gold quality |
| stromal cell of endometrium | CL:0002255 | 89.07 | gold quality |
| endothelial cell | CL:0000115 | 87.00 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 86.13 | gold quality |
| nephron tubule | UBERON:0001231 | 82.72 | gold quality |
| orbitofrontal cortex | UBERON:0004167 | 82.58 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 81.64 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 81.54 | gold quality |
| postcentral gyrus | UBERON:0002581 | 80.93 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 80.43 | gold quality |
| body of pancreas | UBERON:0001150 | 80.37 | gold quality |
| primary visual cortex | UBERON:0002436 | 79.76 | gold quality |
| parietal lobe | UBERON:0001872 | 79.72 | gold quality |
| duodenum | UBERON:0002114 | 78.97 | gold quality |
| occipital lobe | UBERON:0002021 | 77.49 | gold quality |
| prefrontal cortex | UBERON:0000451 | 76.85 | gold quality |
| kidney epithelium | UBERON:0004819 | 76.20 | gold quality |
| lower lobe of lung | UBERON:0008949 | 75.15 | silver quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 75.04 | gold quality |
| frontal cortex | UBERON:0001870 | 74.69 | gold quality |
| pancreas | UBERON:0001264 | 74.31 | gold quality |
| entorhinal cortex | UBERON:0002728 | 74.02 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 73.81 | gold quality |
| endocervix | UBERON:0000458 | 73.72 | gold quality |
| ectocervix | UBERON:0012249 | 73.70 | gold quality |
| cerebellum | UBERON:0002037 | 73.51 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 73.39 | silver quality |
| metanephric glomerulus | UBERON:0004736 | 73.22 | gold quality |
| neocortex | UBERON:0001950 | 73.15 | gold quality |
| cerebellar cortex | UBERON:0002129 | 73.12 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 758.74 |
| E-HCAD-35 | yes | 64.36 |
| E-ANND-3 | yes | 14.13 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
215 targeting TRHDE, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4682 | 100.00 | 68.89 | 1258 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4789-5P | 99.98 | 70.76 | 2721 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-LET-7F-2-3P | 99.98 | 70.98 | 2588 |
| HSA-MIR-1185-1-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-1185-2-3P | 99.98 | 71.04 | 2593 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-LET-7A-5P | 99.98 | 72.29 | 1790 |
| HSA-LET-7B-5P | 99.98 | 72.31 | 1790 |
Cross-species orthologs
18 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | trhde.1 | ENSDARG00000109358 |
| danio_rerio | trhde.2 | ENSDARG00000111837 |
| mus_musculus | Trhde | ENSMUSG00000050663 |
| rattus_norvegicus | Trhde | ENSRNOG00000005278 |
| drosophila_melanogaster | CG7653 | FBGN0028935 |
| drosophila_melanogaster | CG9806 | FBGN0030222 |
| drosophila_melanogaster | CG2111 | FBGN0030223 |
| drosophila_melanogaster | CG6071 | FBGN0036186 |
| drosophila_melanogaster | CG5849 | FBGN0038897 |
| drosophila_melanogaster | CG3502 | FBGN0046253 |
| drosophila_melanogaster | CG31233 | FBGN0051233 |
| drosophila_melanogaster | CG31343 | FBGN0051343 |
| drosophila_melanogaster | CG31445 | FBGN0051445 |
| drosophila_melanogaster | SP1029 | FBGN0263236 |
| drosophila_melanogaster | CG46339 | FBGN0285963 |
| caenorhabditis_elegans | F49B2.6 | WBGENE00009865 |
| caenorhabditis_elegans | WBGENE00011587 | |
| caenorhabditis_elegans | WBGENE00012776 |
Paralogs (11): LTA4H (ENSG00000111144), LNPEP (ENSG00000113441), ENPEP (ENSG00000138792), NPEPPS (ENSG00000141279), RNPEPL1 (ENSG00000142327), AOPEP (ENSG00000148120), ERAP1 (ENSG00000164307), ERAP2 (ENSG00000164308), ANPEP (ENSG00000166825), LVRN (ENSG00000172901), RNPEP (ENSG00000176393)
Protein
Protein identifiers
Thyrotropin-releasing hormone-degrading ectoenzyme — Q9UKU6 (reviewed: Q9UKU6)
Alternative names: Pyroglutamyl-peptidase II, TRH-specific aminopeptidase, Thyroliberinase
All UniProt accessions (2): Q9UKU6, A0AA75K8V0
UniProt curated annotations — full annotation on UniProt →
Function. Specific inactivation of TRH after its release.
Subunit / interactions. Homodimer; disulfide-linked.
Subcellular location. Membrane.
Tissue specificity. Predominantly expressed in brain.
Cofactor. Binds 1 zinc ion per subunit.
Similarity. Belongs to the peptidase M1 family.
RefSeq proteins (1): NP_037513* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001930 | Peptidase_M1 | Family |
| IPR014782 | Peptidase_M1_dom | Domain |
| IPR024571 | ERAP1-like_C_dom | Domain |
| IPR027268 | Peptidase_M4/M1_CTD_sf | Homologous_superfamily |
| IPR034016 | M1_APN-typ | Family |
| IPR042097 | Aminopeptidase_N-like_N_sf | Homologous_superfamily |
| IPR045357 | Aminopeptidase_N-like_N | Domain |
| IPR050344 | Peptidase_M1_aminopeptidases | Family |
Pfam: PF01433, PF11838, PF17900
UniProt features (29 total): glycosylation site 12, binding site 4, compositionally biased region 3, topological domain 2, region of interest 2, chain 1, site 1, transmembrane region 1, disulfide bond 1, sequence conflict 1, active site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UKU6-F1 | 85.49 | 0.67 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 572 (transition state stabilizer); 486 (proton acceptor)
Ligand- & substrate-binding residues (4): 449–453; 485; 489; 508
Disulfide bonds (1): 113
Glycosylation sites (12): 134, 205, 220, 267, 383, 650, 679, 694, 708, 729, 845, 951
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 139 (showing top):
GOMF_METALLOPEPTIDASE_ACTIVITY, GGGTGGRR_PAX4_03, GOBP_CELL_CELL_SIGNALING, GOBP_PEPTIDE_METABOLIC_PROCESS, GGGCATT_MIR365, chr12q21, GOMF_CYSTEINE_TYPE_PEPTIDASE_ACTIVITY, RIGGI_EWING_SARCOMA_PROGENITOR_UP, GOBP_PEPTIDE_CATABOLIC_PROCESS, NOUZOVA_METHYLATED_IN_APL, SCHLESINGER_H3K27ME3_IN_NORMAL_AND_METHYLATED_IN_CANCER, NUYTTEN_EZH2_TARGETS_DN, GOBP_PROTEOLYSIS, AAGCACA_MIR218, GOMF_METALLOEXOPEPTIDASE_ACTIVITY
GO Biological Process (4): proteolysis (GO:0006508), signal transduction (GO:0007165), cell-cell signaling (GO:0007267), peptide catabolic process (GO:0043171)
GO Molecular Function (8): aminopeptidase activity (GO:0004177), zinc ion binding (GO:0008270), pyroglutamyl-peptidase activity (GO:0016920), metalloaminopeptidase activity (GO:0070006), peptidase activity (GO:0008233), metallopeptidase activity (GO:0008237), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)
GO Cellular Component (4): obsolete extracellular space (GO:0005615), plasma membrane (GO:0005886), extracellular exosome (GO:0070062), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 2 |
| signaling | 2 |
| protein metabolic process | 1 |
| cellular process | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| peptide metabolic process | 1 |
| catabolic process | 1 |
| exopeptidase activity | 1 |
| transition metal ion binding | 1 |
| cysteine-type peptidase activity | 1 |
| omega peptidase activity | 1 |
| aminopeptidase activity | 1 |
| metalloexopeptidase activity | 1 |
| hydrolase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| peptidase activity | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| extracellular vesicle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1456 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRHDE | TRH | P20396 | 933 |
| TRHDE | PGPEP1 | Q9NXJ5 | 687 |
| TRHDE | PREP | P48147 | 421 |
| TRHDE | CAMKMT | Q7Z624 | 396 |
| TRHDE | PRLR | P16471 | 387 |
| TRHDE | MEF2B | Q02080 | 374 |
| TRHDE | COX5B | P10606 | 371 |
| TRHDE | RFXANK | O14593 | 362 |
| TRHDE | NR3C1 | P04150 | 357 |
| TRHDE | ALDH18A1 | P54886 | 350 |
| TRHDE | LRRC63 | Q05C16 | 340 |
| TRHDE | BMS1 | Q14692 | 339 |
| TRHDE | SLCO1C1 | Q9NYB5 | 328 |
| TRHDE | TBCB | Q99426 | 324 |
| TRHDE | DIO2 | Q92813 | 323 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SCGB1D1 | MANBA | psi-mi:“MI:0914”(association) | 0.640 |
| TRHDE | MAN1A2 | psi-mi:“MI:0914”(association) | 0.530 |
| VAMP5 | NBAS | psi-mi:“MI:0914”(association) | 0.530 |
| TRHDE | CKAP4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| HAX1 | psi-mi:“MI:0914”(association) | 0.350 | |
| AKT1 | TPM2 | psi-mi:“MI:0914”(association) | 0.350 |
| ATG16L1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| LCN6 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| DNAJB9 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| C1QB | MANBA | psi-mi:“MI:0914”(association) | 0.350 |
| FIBIN | MAN2B1 | psi-mi:“MI:0914”(association) | 0.350 |
| TSPAN3 | SCAMP3 | psi-mi:“MI:0914”(association) | 0.350 |
| CLRN2 | CA12 | psi-mi:“MI:0914”(association) | 0.350 |
| HLA-DRA | MGRN1 | psi-mi:“MI:0914”(association) | 0.350 |
| ICOS | TNFSF9 | psi-mi:“MI:0914”(association) | 0.350 |
| CLGN | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SCHIP1 | TRHDE | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (38): TRHDE (Affinity Capture-MS), MUL1 (Affinity Capture-MS), TSPAN3 (Affinity Capture-MS), DNAJB9 (Affinity Capture-MS), LEMD3 (Affinity Capture-MS), EMILIN2 (Affinity Capture-MS), MANEA (Affinity Capture-MS), FKBP14 (Affinity Capture-MS), KIRREL (Affinity Capture-MS), CANX (Affinity Capture-MS), TMTC3 (Affinity Capture-MS), MESDC2 (Affinity Capture-MS), MAN1A2 (Affinity Capture-MS), TRHDE (Proximity Label-MS), TRHDE (Affinity Capture-MS)
ESM2 similar proteins: A4FV98, A6NKP2, A6QLY2, O18735, O43488, O75382, O75648, O77485, O77486, O88676, P04626, P23764, P25325, P34059, P52848, Q02353, Q0VD18, Q10836, Q10981, Q10982, Q28113, Q32KH5, Q32KJ6, Q3U129, Q3UHN9, Q4R766, Q571E4, Q5I0D5, Q5RB73, Q5RJL2, Q6AYT7, Q6P988, Q7RTV5, Q7Z4H8, Q8CIW5, Q8K093, Q8N2K0, Q8WNQ7, Q96AZ1, Q96SL4
Diamond homologs: A0A6J2ATK2, A6NEC2, A6QPT7, M3XFH7, O57579, P15144, P15145, P15541, P15684, P46557, P50123, P79098, P79143, P79171, P97449, P97629, Q07075, Q10736, Q10836, Q2KHK3, Q32LQ0, Q5RFP3, Q6P179, Q6Q4G3, Q7Q2T8, Q8C129, Q8K093, Q95334, Q9EQH2, Q9JJ22, Q9UIQ6, Q9UKU6, A5HUI5, D3UW23, O93654, O93655, P0DQU2, P16406, P32454, P37893
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
129 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 102 |
| Likely benign | 3 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
4508 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:72286395:G:GG | donor_gain | 1.0000 |
| 12:72286838:G:GT | donor_gain | 1.0000 |
| 12:72309780:A:T | donor_gain | 1.0000 |
| 12:72309797:G:GT | donor_gain | 1.0000 |
| 12:72377991:TTAGG:T | acceptor_loss | 1.0000 |
| 12:72377992:TA:T | acceptor_loss | 1.0000 |
| 12:72377993:A:T | acceptor_loss | 1.0000 |
| 12:72377994:G:GA | acceptor_loss | 1.0000 |
| 12:72378118:CTAGG:C | donor_loss | 1.0000 |
| 12:72378120:AGGTA:A | donor_loss | 1.0000 |
| 12:72378121:GGT:G | donor_loss | 1.0000 |
| 12:72378123:T:A | donor_loss | 1.0000 |
| 12:72473061:CTGCA:C | acceptor_loss | 1.0000 |
| 12:72473062:TGCAG:T | acceptor_loss | 1.0000 |
| 12:72473063:GCAGT:G | acceptor_loss | 1.0000 |
| 12:72473064:CAGTG:C | acceptor_loss | 1.0000 |
| 12:72473065:A:AG | acceptor_gain | 1.0000 |
| 12:72473065:A:G | acceptor_loss | 1.0000 |
| 12:72473065:AGT:A | acceptor_gain | 1.0000 |
| 12:72473065:AGTG:A | acceptor_gain | 1.0000 |
| 12:72473066:G:A | acceptor_loss | 1.0000 |
| 12:72473066:G:GA | acceptor_gain | 1.0000 |
| 12:72473066:GT:G | acceptor_gain | 1.0000 |
| 12:72473066:GTG:G | acceptor_gain | 1.0000 |
| 12:72473066:GTGG:G | acceptor_gain | 1.0000 |
| 12:72473066:GTGGT:G | acceptor_gain | 1.0000 |
| 12:72473177:CATG:C | donor_gain | 1.0000 |
| 12:72473179:TGGT:T | donor_loss | 1.0000 |
| 12:72473180:GGT:G | donor_loss | 1.0000 |
| 12:72473181:G:GA | donor_loss | 1.0000 |
AlphaMissense
7024 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:72473099:G:C | W456C | 1.000 |
| 12:72473099:G:T | W456C | 1.000 |
| 12:72621675:T:C | C822R | 1.000 |
| 12:72621676:G:A | C822Y | 1.000 |
| 12:72621677:C:G | C822W | 1.000 |
| 12:72621696:T:C | C829R | 1.000 |
| 12:72621697:G:A | C829Y | 1.000 |
| 12:72621698:T:G | C829W | 1.000 |
| 12:72621729:T:A | W840R | 1.000 |
| 12:72621729:T:C | W840R | 1.000 |
| 12:72652354:G:A | C858Y | 1.000 |
| 12:72652355:T:G | C858W | 1.000 |
| 12:72652386:T:A | W869R | 1.000 |
| 12:72652386:T:C | W869R | 1.000 |
| 12:72652388:G:C | W869C | 1.000 |
| 12:72652388:G:T | W869C | 1.000 |
| 12:72652452:G:C | A891P | 1.000 |
| 12:72653018:T:C | L904P | 1.000 |
| 12:72653021:T:C | L905P | 1.000 |
| 12:72653102:G:A | G932D | 1.000 |
| 12:72273517:G:C | G247R | 0.999 |
| 12:72286716:C:A | A272D | 0.999 |
| 12:72286719:G:C | R273T | 0.999 |
| 12:72286719:G:T | R273I | 0.999 |
| 12:72286734:G:A | C278Y | 0.999 |
| 12:72286735:T:G | C278W | 0.999 |
| 12:72286739:G:C | D280H | 0.999 |
| 12:72286740:A:T | D280V | 0.999 |
| 12:72286756:G:C | K285N | 0.999 |
| 12:72286756:G:T | K285N | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000008738 (12:72529703 A>T), RS1000016248 (12:72196892 A>G,T), RS1000020537 (12:72569614 A>G), RS1000032129 (12:72166571 A>G), RS1000034002 (12:72109657 G>C), RS1000035854 (12:72634881 T>A,G), RS1000048270 (12:72614976 C>G), RS1000058099 (12:72514078 A>G), RS1000059040 (12:72175956 C>T), RS1000059351 (12:72424873 G>T), RS1000062514 (12:72529933 C>T), RS1000063499 (12:72210374 G>A), RS1000079098 (12:72114212 C>T), RS1000079816 (12:72471168 G>A), RS1000084215 (12:72523235 G>A,T)
Disease associations
OMIM: gene MIM:606950 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): long QT syndrome (MONDO:0002442)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000628_5 | Chemerin levels | 9.000000e-06 |
| GCST001022_4 | Rheumatoid arthritis | 6.000000e-06 |
| GCST002120_3 | Metabolite levels (Dihydroxy docosatrienoic acid) | 9.000000e-06 |
| GCST002892_12 | Perioperative myocardial infarction in coronary artery bypass surgery | 9.000000e-06 |
| GCST003671_9 | Diastolic blood pressure | 8.000000e-06 |
| GCST007325_131 | General risk tolerance (MTAG) | 7.000000e-11 |
| GCST008529_57 | Tea consumption | 1.000000e-06 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004573 | chemerin measurement |
| EFO:0005275 | dihydroxy docosatrienoic acid measurement |
| EFO:0006336 | diastolic blood pressure |
| EFO:0008579 | risk-taking behaviour |
| EFO:0010091 | tea consumption measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008133 | Long QT Syndrome | C14.280.067.565; C14.280.123.625; C16.131.240.400.715; C23.550.073.547 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3886123 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — M1: Aminopeptidase N
ChEMBL bioactivities
1 potent at pChembl≥5 of 1 total, top 1 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 5.10 | Ki | 8000 | nM | CHEMBL3897627 |
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases methylation, affects cotreatment, increases expression | 7 |
| Benzo(a)pyrene | affects methylation, decreases expression | 3 |
| Aflatoxin B1 | affects expression, decreases methylation, increases methylation | 3 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| methyleugenol | decreases expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| mono-(2-ethylhexyl)phthalate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| methylenediphenyl diisocyanate-glutathione adduct | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| bisphenol S | increases expression | 1 |
| incobotulinumtoxinA | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Vorinostat | increases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Arsenic | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Cisplatin | decreases expression, decreases reaction | 1 |
| Fonofos | increases methylation | 1 |
| Estradiol | decreases expression | 1 |
| Methapyrilene | decreases methylation | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Parathion | increases methylation | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3880476 | Binding | Competitive inhibition of TRH-DE (unknown origin) | TRH-like peptide derivatives as inhibitors of the TRH-degrading ectoenzyme |
Clinical trials (associated diseases)
66 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02513940 | PHASE4 | COMPLETED | Influence of Testosterone Administration on Drug-Induced QT Interval Prolongation and Torsades de Pointes |
| NCT03834883 | PHASE4 | COMPLETED | Reducing the Risk of Drug-Induced QT Interval Lengthening in Women |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04675788 | PHASE4 | COMPLETED | Novel Approaches for Minimizing Drug-Induced QT Interval Lengthening |
| NCT01648205 | PHASE2 | COMPLETED | Long-term Efficacy Study of Sodium Channel Blocker in LQT3 Patients |
| NCT02412709 | PHASE2 | UNKNOWN | Long QT Syndrome Screening in Newborns |
| NCT04581408 | PHASE2 | COMPLETED | Mutation-specific Therapy for the Long QT Syndrome |
| NCT00316459 | PHASE1 | COMPLETED | Study Evaluating the Effects of Multiple Oral Doses of ERB-041 on Cardiac Repolarization in Healthy Subjects |
| NCT01849003 | PHASE1 | COMPLETED | Study of the Effect of GS-6615 in Subjects With LQT-3 |
| NCT02365532 | PHASE1 | COMPLETED | Effect of Oral GS-6615 on Dofetilide-Induced QT Prolongation, Safety, and Tolerability in Healthy Adults |
| NCT02412098 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Hepatic Function |
| NCT02441829 | PHASE1 | COMPLETED | Pharmacokinetics of Eleclazine in Adults With Normal and Impaired Renal Function |
| NCT05759962 | PHASE1 | COMPLETED | Phase 1 Study of LQT-1213 in Healthy Adults |
| NCT05906732 | PHASE1/PHASE2 | TERMINATED | Study of LQT-1213 on QTc-induced Prolongation in Healthy Adult Subjects (Part1) and on Congenital Long QT in Patients Diagnosed With Type 2 or 3 Long QT Syndrome (Part 2). |
| NCT00005176 | Not specified | COMPLETED | Long QT Syndrome-Population Genetics and Cardiac Studies |
| NCT00005250 | Not specified | COMPLETED | Linkage Study of Long QT Syndrome In An Amish Kindred |
| NCT00005367 | Not specified | COMPLETED | Epidemiology of Long QTand Asian Sudden Death in Sleep |
| NCT00221832 | Not specified | UNKNOWN | Molecular Genetic Screening and Identification of Congenital Arrhythmogenic Diseases |
| NCT00292032 | Not specified | COMPLETED | Registry of Unexplained Cardiac Arrest |
| NCT00335036 | Not specified | TERMINATED | Pediatric Lead Extractability and Survival Evaluation (PLEASE) |
| NCT00399412 | Not specified | COMPLETED | ECG Signal Collection From Long QT Syndrome, Wide QRS Complexes, Heart Failure, and Cardiac Resynchronization Patients |
| NCT00488254 | Not specified | COMPLETED | The Long QT Syndrome in Pregnancy |
| NCT00588965 | Not specified | COMPLETED | Effect of Beta-blocker Therapy on QTc Response in Exercise and Recovery in Normal Subjects |
| NCT01705925 | Not specified | COMPLETED | Multicenter Evaluation of Children and Young Adults With Genotype Positive Long QT Syndrome |
| NCT01903564 | Not specified | COMPLETED | Fetal and Neonatal Magnetophysiology |
| NCT02082431 | Not specified | COMPLETED | Determine the Incidence of Long QT Amongst a Large Cohort of Subjects Diagnosed With Unilateral or Bilateral Sensorineural Hearing Loss. |
| NCT02413450 | Not specified | ENROLLING_BY_INVITATION | Derivation of Human Induced Pluripotent Stem (iPS) Cells to Heritable Cardiac Arrhythmias |
| NCT02425189 | Not specified | COMPLETED | The Canadian National Long QT Syndrome Registry |
| NCT02439645 | Not specified | TERMINATED | A Registry to Determine the Clinical and Genetic Risk Factors for Torsade De Pointes |
| NCT02439658 | Not specified | UNKNOWN | Genetics of QT Prolongation With Antiarrhythmics |
| NCT02549664 | Not specified | COMPLETED | Exercise in Genetic Cardiovascular Conditions |
| NCT02581241 | Not specified | COMPLETED | Abnormal QT-Response to the Sudden Tachycardia Provoked by Standing in Individuals With Drug-induced Long QT Syndrome |
| NCT02680080 | Not specified | COMPLETED | Effect of Grapefruit on QT Interval in Healthy Volunteers and Patients With Congenital Long QT Syndrome |
| NCT02775513 | Not specified | UNKNOWN | Metabolism of Patients With Genetically Caused Cardiac Arrhythmia |
| NCT02814981 | Not specified | UNKNOWN | Hydroxyzine and Risk of Prolongation of QT Interval |
| NCT02876380 | Not specified | COMPLETED | Prospective Identification of Long QT Syndrome in Fetal Life |
| NCT03182777 | Not specified | COMPLETED | Safety of Local Dental Anesthesia in Patients With Cardiac Channelopathies |
| NCT03544918 | Not specified | COMPLETED | Prevalence of Congenital Long QT Syndrome and Acquired QT Prolongation in a Hospital Cohort |
| NCT03642405 | Not specified | UNKNOWN | Drug-induced Repolarization ECG Changes |
| NCT03678311 | Not specified | COMPLETED | Long QT Syndrome and Sleep Apnea |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.