TRIM33
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Also known as TIF1GAMMAFLJ11429KIAA1113TIFGAMMARFG7TF1GTIF1GPTC7
Summary
TRIM33 (tripartite motif containing 33, HGNC:16290) is a protein-coding gene on chromosome 1p13.2, encoding E3 ubiquitin-protein ligase TRIM33 (Q9UPN9). Acts as an E3 ubiquitin-protein ligase.
The protein encoded by this gene is thought to be a transcriptional corepressor. However, molecules that interact with this protein have not yet been identified. The protein is a member of the tripartite motif family. This motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. Three alternatively spliced transcript variants for this gene have been described, however, the full-length nature of one variant has not been determined.
Source: NCBI Gene 51592 — RefSeq curated summary.
At a glance
- Gene–disease (curated): developmental dysplasia of the hip (Limited, GenCC)
- GWAS associations: 17
- Clinical variants (ClinVar): 85 total — 1 pathogenic, 1 likely-pathogenic
- Phenotypes (HPO): 23
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 1 cancer types
- MANE Select transcript:
NM_015906
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:16290 |
| Approved symbol | TRIM33 |
| Name | tripartite motif containing 33 |
| Location | 1p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TIF1GAMMA, FLJ11429, KIAA1113, TIFGAMMA, RFG7, TF1G, TIF1G, PTC7 |
| Ensembl gene | ENSG00000197323 |
| Ensembl biotype | protein_coding |
| OMIM | 605769 |
| Entrez | 51592 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 12 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000358465, ENST00000369543, ENST00000448034, ENST00000476908, ENST00000478032, ENST00000492227, ENST00000925752, ENST00000925753, ENST00000925754, ENST00000925755, ENST00000925756, ENST00000925757, ENST00000925758, ENST00000964324, ENST00000964325
RefSeq mRNA: 2 — MANE Select: NM_015906
NM_015906, NM_033020
CCDS: CCDS872, CCDS873
Canonical transcript exons
ENST00000358465 — 20 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000784400 | 114427177 | 114427294 |
| ENSE00000784402 | 114424591 | 114424755 |
| ENSE00000784403 | 114421436 | 114421636 |
| ENSE00000784404 | 114410184 | 114410316 |
| ENSE00000784405 | 114408677 | 114408740 |
| ENSE00000784406 | 114406941 | 114407100 |
| ENSE00000784407 | 114405410 | 114405759 |
| ENSE00000784408 | 114402760 | 114402883 |
| ENSE00000784409 | 114401389 | 114401463 |
| ENSE00000784411 | 114397940 | 114397990 |
| ENSE00001215827 | 114425449 | 114425723 |
| ENSE00001450301 | 114392790 | 114397860 |
| ENSE00001595585 | 114463412 | 114463556 |
| ENSE00001749166 | 114464270 | 114464388 |
| ENSE00003521752 | 114399457 | 114399609 |
| ENSE00003711583 | 114463104 | 114463236 |
| ENSE00003720468 | 114433617 | 114433733 |
| ENSE00003727990 | 114427748 | 114427894 |
| ENSE00003729043 | 114430798 | 114430912 |
| ENSE00003846759 | 114510551 | 114511203 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.22.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 32.8618 / max 333.5770, expressed in 1818 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 13946 | 30.7958 | 1818 |
| 13944 | 1.0880 | 600 |
| 13945 | 0.7056 | 438 |
| 13940 | 0.1106 | 18 |
| 13941 | 0.1076 | 28 |
| 13942 | 0.0542 | 11 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endometrium epithelium | UBERON:0004811 | 99.22 | gold quality |
| secondary oocyte | CL:0000655 | 99.14 | gold quality |
| oocyte | CL:0000023 | 98.97 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 96.75 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 96.39 | gold quality |
| corpus epididymis | UBERON:0004359 | 95.60 | gold quality |
| nipple | UBERON:0002030 | 95.53 | gold quality |
| cerebellar vermis | UBERON:0004720 | 95.35 | gold quality |
| tibia | UBERON:0000979 | 94.68 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 94.61 | gold quality |
| CA1 field of hippocampus | UBERON:0003881 | 94.31 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 94.07 | gold quality |
| seminal vesicle | UBERON:0000998 | 94.05 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 93.83 | gold quality |
| gingival epithelium | UBERON:0001949 | 93.82 | gold quality |
| postcentral gyrus | UBERON:0002581 | 93.49 | gold quality |
| hair follicle | UBERON:0002073 | 93.48 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 93.47 | gold quality |
| parietal lobe | UBERON:0001872 | 93.39 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 93.37 | gold quality |
| visceral pleura | UBERON:0002401 | 93.36 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 93.29 | gold quality |
| entorhinal cortex | UBERON:0002728 | 93.26 | gold quality |
| caput epididymis | UBERON:0004358 | 93.26 | gold quality |
| cauda epididymis | UBERON:0004360 | 93.19 | gold quality |
| upper leg skin | UBERON:0004262 | 93.09 | gold quality |
| cardia of stomach | UBERON:0001162 | 92.91 | gold quality |
| urethra | UBERON:0000057 | 92.86 | gold quality |
| corpus callosum | UBERON:0002336 | 92.82 | gold quality |
| squamous epithelium | UBERON:0006914 | 92.81 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.61 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SOX2
miRNA regulators (miRDB)
389 targeting TRIM33, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
Literature-anchored findings (GeneRIF, showing 40)
- TIF1alpha interacts with TIF1gamma and the coiled-coil region of TIF1gamma is necessary for this interaction. (PMID:12096914)
- Thus, Smad2/3-TIF1gamma and Smad2/3-Smad4 function as complementary effector arms in the control of hematopoietic cell fate by the TGFbeta/Smad pathway. (PMID:16751102)
- Study reports that TIF1gamma expression is markedly down-regulated in human pancreatic tumors by quantitative RT-PCR and immunohistochemistry. (PMID:19629168)
- Hyperthermia incurred platelet glycoprotein Ibalpha ectodomain shedding. (PMID:20158380)
- These studies are consistent with a model in which TIF1gamma acts to ubiquitinate LDB1 leading to degradation of LDB1 and changes in transcription of LDB1-dependent promoters. (PMID:20447379)
- Chromatin immunoprecipitation assays in human CD34(+) cells supported a TIF1gamma-dependent recruitment of positive elongation factors to erythroid genes to promote transcription elongation by counteracting Pol II pausing. (PMID:20603019)
- regulation of adult hematopoiesis through TIF1gamma-mediated transcriptional repression of TAL1 and PU.1 target genes. (PMID:21474105)
- TIF1gamma was almost undetectable in leukemic cells of 35% of CMML patients. This downregulation was related to the hypermethylation of CpG sequences and specific histone modifications in the gene promoter. (PMID:21537084)
- TIF1gamma binds to and represses the plasminogen activator inhibitor 1 promoter, demonstrating a direct role of TIF1gamma in TGF-beta-dependent gene expression (PMID:21597466)
- TIF1gamma dictates the residence time of activated Smad complexes at promoters of TGF-beta superfamily target genes. (PMID:21726812)
- Data suggest that over-expression of TIF1gamma occurs in early stages of colorectal carcinogenesis, is inversely related with Smad4 loss, and may be a prognostic indicator for poor outcome. (PMID:22046087)
- These results suggest that E4-ORF3 targets proteins for relocalization through a loosely homologous sequence dependent on accessibility. (PMID:22123502)
- Study reports an essential role for TRIM33 in the activation of Gsc and Mixl1 by nodal signals, and delineate how Smads gain access to poised promoters of master regulators under the command of nodal TGF-beta signals. (PMID:22196728)
- Adenovirus E4orf3 targets TIF1 gamma for proteasome-dependent degradation during infection. (PMID:22205733)
- Data suggest that the formation of transient TIF1gamma-Smad2-Smad4 ternary complexes is the only one that can account for TGF-beta signaling. (PMID:22461896)
- Tif1gamma transgene is essential for the terminal differentiation of mammary alveolar epithelial cells at the end of pregnancy and to ensure lactation. (PMID:23154409)
- TIF1gamma is an APC/C-interacting protein that regulates APC/C function. It is not a substrate for APC/C-dependent ubiquitylation but associates specifically with the APC/C holoenzyme & Cdc20 to affect APC/C activity & progression through mitosis. (PMID:23160376)
- Case Report: suggest that TIF1gamma expression in neoplasms not only determines the tumour activity but also causes dermatomyositis. (PMID:23407650)
- mutation and methylation in the promoter region of TIF1gamma in non-small cell lung cancer (PMID:23676978)
- Results identify a new TGFbeta regulatory layer, whereby sumoylation strengthens the TIF1gamma repressive action on canonical TGFbeta signaling. (PMID:23788427)
- TRIM33 plays a role in PARP-dependent DNA damage response and regulates ALC1 activity by promoting its timely removal from sites of DNA damage. (PMID:23926104)
- These studies demonstrate that anti-NXP-2 and anti-TIF-1gamma antibodies are frequent DM specificities (found in 55% of patients) and are present in most patients with cancer-associated dermatomyositis. (PMID:24037894)
- Study suggests TRIM33 and NRAS-CSDE1 as candidate genes for autism, and may provide a novel insight into the etiology of autism (PMID:24189344)
- regulates tumor growth and metastasis through inhibition of TGF-beta/Smad signaling and may serve as a novel prognostic biomarker in hepatocellular carcinoma (PMID:24954480)
- Data indicate that tripartite motif containing 33 protein TIF1gamma promotes sumoylation of SKI-like proto-oncogene protein SnoN1 and regulates epithelial-mesenchymal transition (EMT). (PMID:25059663)
- The ubiquitination of DHX33 by TRIM33 is lysine 63 specific and is required for the formation of the DHX33-NLRP3 inflammasome complex. (PMID:25172487)
- The dermatomyositis autoantigen TIF1gamma is markedly up-regulated during muscle regeneration in human and mouse muscle cells. (PMID:25186009)
- Results show that TRIM33 is significantly downregulated in clear renal cell carcinoma tissues which seems to correlate with pathologic stages and grades. (PMID:25381221)
- Tumour suppressor TRIM33 targets nuclear beta-catenin degradation (PMID:25639486)
- our findings reveal a new mechanism by which SOX2-mediated transcription repression of TIF1gamma promotes TGF-beta-induced epithelial-mesenchymal transition in non-small-cell lung cancer (PMID:25961934)
- our work indicates that TIF1gamma exerts its tumor-suppressive functions in part by promoting chromosomal stability. (PMID:26282171)
- The adenovirus E4-ORF3 protein functions as a SUMO E3 ligase for TIF-1gamma sumoylation and poly-SUMO chain elongation. (PMID:27247387)
- suggest that SnoN suppresses TGF-betainduced epithelial-mesenchymal transition and invasion of bladder cancer cells in a TIF1gammadependent manner (PMID:27430247)
- Data show that tripartite motif-containing protein 33 (TRIM33) silencing attenuates down-regulation of MYC and TGF-beta signaling in response to bromodomain and extraterminal domain protein inhibitors (BETi). (PMID:27432991)
- Anti-TIF1gamma antibodies are rarely present in patients with solid cancers or paraneoplastic rheumatic syndromes. This finding strengthens the approach to using anti-TIF1gamma IgG as a marker for cancer-associated dermatomyositis. (PMID:28704599)
- Tumors from paraneoplastic anti-TIF1gamma-positive cancer-associated myositis patients showed an increased number of genetic alterations, such as mutations and loss of heterozygosity, in TIF1 genes. (PMID:29149307)
- Not only did anti-TIF1gamma antibodies correlate strongly with malignancy in dermatomyositis patients, but cancers were also significantly more advanced in anti-TIF1gamma-positive DM patients than in anti-TIF1gamma-negative patients. (PMID:29745874)
- These results suggest that nuclear c-Abl-mediated tyrosine phosphorylation of TIF1gamma has a desuppressive role in TGF-beta-Smad2/3 signaling. (PMID:30177833)
- Our findings show that circPTK2 (hsa_circ_0008305) inhibits TGF-beta-induced EMT and metastasis by controlling TIF1gamma in NSCLC, revealing a novel mechanism by which circRNA regulates TGF-beta-induced EMT and tumor metastasis, and suggesting that circPTK2 overexpression could provide a therapeutic strategy for advanced NSCLC. (PMID:30261900)
- The expression of TIF1gamma in the muscle of idiopathic inflammatory myopathies was related to the positivity for serum anti-TIF1gamma antibody and presence of tubuloreticular bodies in the muscle biopsies. (PMID:30398003)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | trim33 | ENSDARG00000016181 |
| mus_musculus | Trim33 | ENSMUSG00000033014 |
| rattus_norvegicus | Trim33 | ENSRNOG00000018946 |
Paralogs (80): MID2 (ENSG00000080561), TRIM9 (ENSG00000100505), MID1 (ENSG00000101871), MEFV (ENSG00000103313), TRIM35 (ENSG00000104228), TRIM14 (ENSG00000106785), TRIM37 (ENSG00000108395), TRIM2 (ENSG00000109654), TRIM3 (ENSG00000110171), TRIM38 (ENSG00000112343), TRIM62 (ENSG00000116525), TRIM67 (ENSG00000119283), TRIM32 (ENSG00000119401), BSPRY (ENSG00000119411), TRIM25 (ENSG00000121060), TRIM6 (ENSG00000121236), TRIM24 (ENSG00000122779), TRIM51 (ENSG00000124900), TRIM28 (ENSG00000130726), TRIM21 (ENSG00000132109), TRIM5 (ENSG00000132256), TRIM22 (ENSG00000132274), TRIM47 (ENSG00000132481), TRIM45 (ENSG00000134253), TRIM29 (ENSG00000137699), TRIM54 (ENSG00000138100), PML (ENSG00000140464), TRIM65 (ENSG00000141569), TRIM43B (ENSG00000144010), TRIM43 (ENSG00000144015), TRIM7 (ENSG00000146054), TRIM41 (ENSG00000146063), TRIM50 (ENSG00000146755), TRIM4 (ENSG00000146833), TRIM55 (ENSG00000147573), TRIM48 (ENSG00000150244), TRIM36 (ENSG00000152503), TRIM11 (ENSG00000154370), TRIM74 (ENSG00000155428), TRIM42 (ENSG00000155890)
Protein
Protein identifiers
E3 ubiquitin-protein ligase TRIM33 — Q9UPN9 (reviewed: Q9UPN9)
Alternative names: Ectodermin homolog, RET-fused gene 7 protein, RING-type E3 ubiquitin transferase TRIM33, Transcription intermediary factor 1-gamma, Tripartite motif-containing protein 33
All UniProt accessions (2): Q9UPN9, H0Y612
UniProt curated annotations — full annotation on UniProt →
Function. Acts as an E3 ubiquitin-protein ligase. Promotes SMAD4 ubiquitination, nuclear exclusion and degradation via the ubiquitin proteasome pathway. According to PubMed:16751102, does not promote a decrease in the level of endogenous SMAD4. May act as a transcriptional repressor. Inhibits the transcriptional response to TGF-beta/BMP signaling cascade. Plays a role in the control of cell proliferation. Its association with SMAD2 and SMAD3 stimulates erythroid differentiation of hematopoietic stem/progenitor. Monoubiquitinates SMAD4 and acts as an inhibitor of SMAD4-dependent TGF-beta/BMP signaling cascade (Monoubiquitination of SMAD4 hampers its ability to form a stable complex with activated SMAD2/3 resulting in inhibition of TGF-beta/BMP signaling cascade).
Subunit / interactions. Homooligomer and heterooligomer with TRIM24 and TRIM28 family members. Interacts with SMAD4 in unstimulated cells. Found in a complex with SMAD2 and SMAD3 upon addition of TGF-beta. Interacts with SMAD2 and SMAD3. Interacts with SMAD4 under basal and induced conditions and, upon TGF-beta signaling, with activated SMAD2. Forms a ternary complex with SMAD4 and SMAD2 upon TGF-beta signaling.
Subcellular location. Nucleus.
Tissue specificity. Expressed in stem cells at the bottom of the crypts of the colon (at protein level). Expressed in colon adenomas and adenocarcinomas (at protein level). Expressed in brain, lung, liver, spleen, thymus, prostate, kidney, testis, heart, placenta, pancreas, small intestine, ovary, colon, skeletal muscle and hematopoietic progenitors.
Post-translational modifications. Sumoylated with SUMO1.
Disease relevance. A chromosomal aberration involving TRIM33 is found in papillary thyroid carcinomas (PTCs). Translocation t(1;10)(p13;q11) with RET. The translocation generates the TRIM33/RET (PTC7) oncogene. Developmental dysplasia of the hip 4 (DDH4) [MIM:621311] An autosomal recessive form of congenital dysplasia of the hip, a common skeletal anomaly in which the normal seating of the femoral head in the acetabulum is disrupted. Its severity ranges from mild instability of the femoral head with slight capsular laxity, permitting minimal lateral displacement, through moderate lateral displacement of the femoral head, without loss of contact of the head with the acetabulum, up to complete dislocation of the femoral head from the acetabulum. The disease may be caused by variants affecting the gene represented in this entry.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the TRIM/RBCC family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UPN9-1 | Alpha | yes |
| Q9UPN9-2 | Beta |
RefSeq proteins (2): NP_056990, NP_148980 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000315 | Znf_B-box | Domain |
| IPR001487 | Bromodomain | Domain |
| IPR001841 | Znf_RING | Domain |
| IPR001965 | Znf_PHD | Domain |
| IPR003649 | Bbox_C | Domain |
| IPR011011 | Znf_FYVE_PHD | Homologous_superfamily |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR019786 | Zinc_finger_PHD-type_CS | Conserved_site |
| IPR019787 | Znf_PHD-finger | Domain |
| IPR036427 | Bromodomain-like_sf | Homologous_superfamily |
Pfam: PF00439, PF00628, PF00643
UniProt features (109 total): modified residue 20, cross-link 19, compositionally biased region 10, sequence variant 9, region of interest 8, binding site 8, helix 7, strand 7, turn 6, zinc finger region 4, sequence conflict 4, mutagenesis site 2, chain 1, domain 1, coiled-coil region 1, site 1, splice variant 1
Structure
Experimental structures (PDB)
9 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7ZDD | X-RAY DIFFRACTION | 1.62 |
| 5MR8 | X-RAY DIFFRACTION | 1.74 |
| 3U5N | X-RAY DIFFRACTION | 1.95 |
| 3U5O | X-RAY DIFFRACTION | 2.7 |
| 3U5P | X-RAY DIFFRACTION | 2.8 |
| 8BDY | X-RAY DIFFRACTION | 3.05 |
| 3U5M | X-RAY DIFFRACTION | 3.08 |
| 8BD8 | X-RAY DIFFRACTION | 3.1 |
| 8BD9 | X-RAY DIFFRACTION | 3.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UPN9-F1 | 62.49 | 0.25 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 964–965 (breakpoint for translocation to form trim33-ret oncogene)
Ligand- & substrate-binding residues (8): 217; 220; 241; 245; 276; 279; 299; 304
Post-translational modifications (39): 515, 515, 535, 577, 591, 591, 598, 604, 763, 769, 793, 803, 815, 862, 951, 953, 1051, 1102, 1105, 1119 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 125 | abolishes e3 activity but does not affect interaction with smad4; when associated with a-128. |
| 128 | abolishes e3 activity but does not affect interaction with smad4; when associated with a-125. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-2173795 | Downregulation of SMAD2/3:SMAD4 transcriptional activity |
| R-HSA-9754189 | Germ layer formation at gastrulation |
MSigDB gene sets: 357 (showing top):
GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, AAGCAAT_MIR137, REACTOME_SIGNALING_BY_TGF_BETA_RECEPTOR_COMPLEX, GCM_GSPT1, MAZ_Q6, BROWNE_HCMV_INFECTION_16HR_UP, MEF2_02, AP2_Q3, BILD_SRC_ONCOGENIC_SIGNATURE, GCM_BCL2L1, TCF4_Q5, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, CAGCAGG_MIR370, ONKEN_UVEAL_MELANOMA_UP, WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP
GO Biological Process (5): negative regulation of transcription by RNA polymerase II (GO:0000122), protein ubiquitination (GO:0016567), regulation of transforming growth factor beta receptor signaling pathway (GO:0017015), negative regulation of BMP signaling pathway (GO:0030514), negative regulation of DNA-templated transcription (GO:0045892)
GO Molecular Function (9): DNA binding (GO:0003677), ubiquitin-protein transferase activity (GO:0004842), zinc ion binding (GO:0008270), ubiquitin protein ligase activity (GO:0061630), co-SMAD binding (GO:0070410), R-SMAD binding (GO:0070412), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (4): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), nuclear lumen (GO:0031981)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 1 |
| Gastrulation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| SMAD binding | 2 |
| cellular anatomical structure | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| protein modification by small protein conjugation | 1 |
| transforming growth factor beta receptor signaling pathway | 1 |
| regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 1 |
| regulation of cellular response to transforming growth factor beta stimulus | 1 |
| BMP signaling pathway | 1 |
| regulation of BMP signaling pathway | 1 |
| negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 1 |
| negative regulation of cellular response to growth factor stimulus | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| nucleic acid binding | 1 |
| ubiquitin-like protein transferase activity | 1 |
| transition metal ion binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| chromosome | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| nucleus | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
2400 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRIM33 | SMAD2 | Q15796 | 993 |
| TRIM33 | SMAD3 | P84022 | 953 |
| TRIM33 | MORC3 | Q14149 | 924 |
| TRIM33 | H3C1 | P02295 | 840 |
| TRIM33 | SMAD4 | Q13485 | 824 |
| TRIM33 | RET | P07949 | 819 |
| TRIM33 | IFIH1 | Q9BYX4 | 818 |
| TRIM33 | SAE1 | Q9UBE0 | 806 |
| TRIM33 | RET | P07949 | 786 |
| TRIM33 | TRIM28 | Q13263 | 771 |
| TRIM33 | NCOA4 | Q13772 | 758 |
| TRIM33 | TRIM21 | P19474 | 752 |
| TRIM33 | TRAT1 | Q6PIZ9 | 746 |
| TRIM33 | TRIM17 | Q9Y577 | 731 |
| TRIM33 | H3-3A | P06351 | 721 |
IntAct
163 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMAD3 | SMAD4 | psi-mi:“MI:0914”(association) | 0.980 |
| RB1CC1 | ATG13 | psi-mi:“MI:0914”(association) | 0.820 |
| TRIM33 | TRIM24 | psi-mi:“MI:0914”(association) | 0.790 |
| TRIM24 | TRIM33 | psi-mi:“MI:0915”(physical association) | 0.790 |
| TRIM33 | SMAD4 | psi-mi:“MI:0914”(association) | 0.750 |
| TRIM33 | SMAD4 | psi-mi:“MI:0915”(physical association) | 0.750 |
| RABGGTB | YKT6 | psi-mi:“MI:0914”(association) | 0.740 |
| CNOT3 | CNOT1 | psi-mi:“MI:0914”(association) | 0.740 |
| HSPB2 | BAG3 | psi-mi:“MI:0914”(association) | 0.670 |
| SMAD2 | TRIM33 | psi-mi:“MI:0915”(physical association) | 0.660 |
| TRIM33 | SMAD2 | psi-mi:“MI:0915”(physical association) | 0.660 |
| QPRT | PIK3C2A | psi-mi:“MI:0914”(association) | 0.640 |
| KPNA1 | TCERG1 | psi-mi:“MI:0914”(association) | 0.640 |
| JUN | NFATC1 | psi-mi:“MI:0914”(association) | 0.610 |
| TRIM28 | TRIM24 | psi-mi:“MI:0914”(association) | 0.600 |
| TRIM28 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| RABGGTB | PIPSL | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF324B | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| NUP62 | RGPD8 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNF764 | SH3PXD2B | psi-mi:“MI:0914”(association) | 0.530 |
| TRIM28 | ZNF320 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (605): DHX33 (Affinity Capture-Western), DHX33 (Biochemical Activity), UBE2N (Reconstituted Complex), UBE2E1 (Reconstituted Complex), UBE2D3 (Reconstituted Complex), TRIM33 (Affinity Capture-Western), TRIM33 (Reconstituted Complex), TRIM33 (Affinity Capture-Western), TRIM33 (Affinity Capture-MS), TRIM33 (Affinity Capture-MS), TRIM33 (Affinity Capture-MS), TRIM33 (Affinity Capture-MS), TRIM33 (Affinity Capture-MS), TRIM33 (Affinity Capture-MS), TRIM33 (Co-fractionation)
ESM2 similar proteins: A0A1L8GR68, A2A791, B2GUN4, E1BP74, E1BZ85, F1QLG5, F7AQ22, O00472, O15164, O15550, O70546, O88974, O95789, P49140, P55265, P70365, Q14202, Q14596, Q15047, Q15788, Q4PJW2, Q5R413, Q5RC94, Q5RDJ2, Q5VZL5, Q64127, Q69Z66, Q6H8Q1, Q6KC51, Q6NXK2, Q6P3Y5, Q6PFK1, Q7Z3K3, Q8BJ34, Q8BL65, Q8BZH4, Q8CHY6, Q8IZD4, Q8TEW8, Q8VIG2
Diamond homologs: A0A0R4IXF6, A0A7U2QYM2, A2AUY4, A2BIL7, A8DZJ1, B2KF05, B2RRD7, B2RWS6, B7ZS37, D4A7T3, E9Q2Z1, F1QW93, F1R5H6, F7DRV9, G5E8P1, G5EGM3, O15164, O60885, O74350, O88379, O95696, P13709, P21675, P25440, P35177, P45481, P51123, P55201, Q03330, Q07442, Q08D75, Q09472, Q12830, Q15059, Q1LUC3, Q23590, Q32S26, Q338B9, Q4R8Y1, Q54BA2
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TRIM33 | up-regulates | SMAD3 | binding |
| TRIM33 | “up-regulates activity” | SMAD3 | binding |
| TRIM33 | “up-regulates activity” | SMAD2 | binding |
| TRIM33 | “down-regulates quantity by destabilization” | CTNNB1 | binding |
| Ub:E2 | “up-regulates activity” | TRIM33 | ubiquitination |
| TRIM33 | “down-regulates quantity by destabilization” | CTNNB1 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 185 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Formation of definitive endoderm | 5 | 27.2× | 1e-04 |
| Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer | 5 | 14.1× | 2e-03 |
| Gastrulation | 6 | 11.9× | 9e-04 |
| SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription | 5 | 11.8× | 3e-03 |
| TP53 Regulates Transcription of DNA Repair Genes | 8 | 11.1× | 1e-04 |
| Deactivation of the beta-catenin transactivating complex | 5 | 8.9× | 7e-03 |
| HIV Life Cycle | 6 | 7.4× | 5e-03 |
| TCF dependent signaling in response to WNT | 7 | 6.3× | 5e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| SMAD protein signal transduction | 5 | 21.2× | 6e-04 |
| positive regulation of miRNA transcription | 7 | 11.8× | 5e-04 |
| transcription by RNA polymerase II | 13 | 5.3× | 3e-04 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 1 cancer types — MBL.
Clinical variants and AI predictions
ClinVar
85 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 1 |
| Uncertain significance | 50 |
| Likely benign | 1 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 4075745 | NM_015906.4(TRIM33):c.1636ACA[6] (p.Thr550_Gln551insThr) | Pathogenic |
| 3063595 | NM_015906.4(TRIM33):c.1650_1651insTGT (p.Thr550_Gln551insCys) | Likely pathogenic |
SpliceAI
3206 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:114397650:A:AC | donor_gain | 1.0000 |
| 1:114397651:C:CC | donor_gain | 1.0000 |
| 1:114397673:T:C | donor_gain | 1.0000 |
| 1:114398004:C:CT | acceptor_gain | 1.0000 |
| 1:114399455:A:AC | donor_gain | 1.0000 |
| 1:114399456:C:CT | donor_gain | 1.0000 |
| 1:114399456:CT:C | donor_gain | 1.0000 |
| 1:114399456:CTT:C | donor_gain | 1.0000 |
| 1:114399458:T:TA | donor_gain | 1.0000 |
| 1:114399466:CCTT:C | donor_gain | 1.0000 |
| 1:114399610:C:CC | acceptor_gain | 1.0000 |
| 1:114401470:C:CT | acceptor_gain | 1.0000 |
| 1:114401470:C:T | acceptor_gain | 1.0000 |
| 1:114401471:A:T | acceptor_gain | 1.0000 |
| 1:114406357:CATA:C | acceptor_gain | 1.0000 |
| 1:114406934:AGCTT:A | donor_loss | 1.0000 |
| 1:114406935:GCTT:G | donor_loss | 1.0000 |
| 1:114406936:CTTA:C | donor_loss | 1.0000 |
| 1:114406937:TTACC:T | donor_loss | 1.0000 |
| 1:114406938:TACC:T | donor_loss | 1.0000 |
| 1:114406939:A:AC | donor_gain | 1.0000 |
| 1:114406939:A:C | donor_loss | 1.0000 |
| 1:114406940:C:CC | donor_gain | 1.0000 |
| 1:114407096:CACAG:C | acceptor_gain | 1.0000 |
| 1:114407098:CAG:C | acceptor_gain | 1.0000 |
| 1:114407101:C:CC | acceptor_gain | 1.0000 |
| 1:114407851:T:C | donor_gain | 1.0000 |
| 1:114408673:TCA:T | donor_loss | 1.0000 |
| 1:114408674:CA:C | donor_loss | 1.0000 |
| 1:114408675:A:AC | donor_gain | 1.0000 |
AlphaMissense
7431 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:114397802:A:G | L1077P | 1.000 |
| 1:114397814:A:G | F1073S | 1.000 |
| 1:114397835:C:T | G1066E | 1.000 |
| 1:114397836:C:A | G1066W | 1.000 |
| 1:114397836:C:G | G1066R | 1.000 |
| 1:114397836:C:T | G1066R | 1.000 |
| 1:114399463:A:C | F1038L | 1.000 |
| 1:114399463:A:T | F1038L | 1.000 |
| 1:114399464:A:G | F1038S | 1.000 |
| 1:114399465:A:G | F1038L | 1.000 |
| 1:114399472:A:C | C1035W | 1.000 |
| 1:114399473:C:T | C1035Y | 1.000 |
| 1:114399474:A:G | C1035R | 1.000 |
| 1:114399475:G:C | N1034K | 1.000 |
| 1:114399475:G:T | N1034K | 1.000 |
| 1:114399482:A:G | F1032S | 1.000 |
| 1:114399491:C:G | R1029P | 1.000 |
| 1:114399494:A:T | V1028D | 1.000 |
| 1:114399506:A:G | F1024S | 1.000 |
| 1:114399525:A:C | Y1018D | 1.000 |
| 1:114399548:A:G | L1010P | 1.000 |
| 1:114399548:A:T | L1010H | 1.000 |
| 1:114399556:T:A | K1007N | 1.000 |
| 1:114399556:T:G | K1007N | 1.000 |
| 1:114399560:A:T | V1006E | 1.000 |
| 1:114399569:A:G | L1003S | 1.000 |
| 1:114399587:A:T | I997K | 1.000 |
| 1:114399599:T:C | Y993C | 1.000 |
| 1:114399600:A:C | Y993D | 1.000 |
| 1:114399600:A:G | Y993H | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000046024 (1:114415133 T>C), RS1000050646 (1:114430439 C>T), RS1000051280 (1:114494148 G>C), RS1000081587 (1:114470053 G>T), RS1000103253 (1:114508137 A>G), RS1000103788 (1:114407839 G>C,T), RS1000112604 (1:114443737 A>G), RS1000124950 (1:114501284 A>G), RS1000238605 (1:114400676 C>G,T), RS1000280324 (1:114393439 G>T), RS1000317939 (1:114474968 G>C), RS1000351648 (1:114456538 C>T), RS1000376420 (1:114438391 A>C,T), RS1000398886 (1:114501054 G>A), RS1000417346 (1:114393957 G>C,T)
Disease associations
OMIM: gene MIM:605769 | disease phenotypes: MIM:167000, MIM:142700, MIM:621311
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental dysplasia of the hip | Limited | Autosomal recessive |
Mondo (3): ovarian cancer (MONDO:0008170), developmental dysplasia of the hip (MONDO:0000158), developmental dysplasia of the hip 4 (MONDO:0979872)
Orphanet (1): Rare ovarian cancer (Orphanet:213500)
HPO phenotypes
23 total (23 of 23 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000023 | Inguinal hernia |
| HP:0000079 | Abnormality of the urinary system |
| HP:0000160 | Narrow mouth |
| HP:0000174 | Abnormal palate morphology |
| HP:0000272 | Malar flattening |
| HP:0000286 | Epicanthus |
| HP:0000316 | Hypertelorism |
| HP:0000364 | Hearing abnormality |
| HP:0000431 | Wide nasal bridge |
| HP:0000457 | Depressed nasal ridge |
| HP:0000463 | Anteverted nares |
| HP:0001374 | Congenital hip dislocation |
| HP:0001382 | Joint hypermobility |
| HP:0001385 | Hip dysplasia |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001671 | Abnormal cardiac septum morphology |
| HP:0001702 | Abnormal tricuspid valve morphology |
| HP:0002815 | Abnormality of the knee |
| HP:0003577 | Congenital onset |
| HP:0004097 | Deviation of finger |
| HP:0010759 | Prominence of the premaxilla |
| HP:0011328 | Abnormal fontanelle morphology |
GWAS associations
17 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002268_3 | Autism | 2.000000e-07 |
| GCST002268_4 | Autism | 6.000000e-08 |
| GCST002268_5 | Autism | 6.000000e-08 |
| GCST002268_6 | Autism | 4.000000e-08 |
| GCST002268_7 | Autism | 8.000000e-08 |
| GCST002268_8 | Autism | 7.000000e-08 |
| GCST002268_9 | Autism | 3.000000e-08 |
| GCST004630_9 | Mean corpuscular hemoglobin | 3.000000e-14 |
| GCST007576_116 | Chronotype | 8.000000e-09 |
| GCST010151_3 | Carotid intima media thickness x smoking interaction | 9.000000e-06 |
| GCST90002390_9 | Mean corpuscular hemoglobin | 1.000000e-20 |
| GCST90002392_276 | Mean corpuscular volume | 7.000000e-23 |
| GCST90002396_140 | Mean reticulocyte volume | 4.000000e-20 |
| GCST90002397_770 | Mean spheric corpuscular volume | 6.000000e-20 |
| GCST90002401_353 | Platelet distribution width | 1.000000e-10 |
| GCST90002403_14 | Red blood cell count | 1.000000e-09 |
| GCST90002404_472 | Red cell distribution width | 2.000000e-11 |
EFO canonical traits (7, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004527 | mean corpuscular hemoglobin |
| EFO:0008328 | chronotype measurement |
| EFO:0006527 | smoking status measurement |
| EFO:0010701 | mean reticulocyte volume |
| EFO:0007984 | platelet component distribution width |
| EFO:0004305 | erythrocyte count |
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000082602 | Developmental Dysplasia of the Hip | C05.550.518.384.500; C05.660.297; C16.131.621.297 |
| D010051 | Ovarian Neoplasms | C04.588.322.455; C12.050.351.500.056.630.705; C12.050.351.937.418.685; C12.100.250.056.630.705; C12.900.418.685; C19.344.410; C19.391.630.705 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2176772 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — TIF1 family
ChEMBL bioactivities
40 potent at pChembl≥5 of 96 total, top 40 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 8.50 | IC50 | 3.19 | nM | CHEMBL4440737 |
| 7.86 | IC50 | 13.72 | nM | CHEMBL4470967 |
| 6.85 | IC50 | 140 | nM | MOLIBRESIB |
| 6.76 | Kd | 173 | nM | MOLIBRESIB |
| 6.63 | IC50 | 233.5 | nM | CYCLOPENTANONE |
| 6.62 | IC50 | 240.3 | nM | CHEMBL4467793 |
| 6.60 | IC50 | 249.8 | nM | CYCLOOCTANONE |
| 6.57 | IC50 | 268.9 | nM | CHEMBL4572394 |
| 6.55 | IC50 | 283.4 | nM | CHEMBL543846 |
| 6.52 | IC50 | 299.4 | nM | SALICYLADEHYDE |
| 6.52 | IC50 | 300.6 | nM | CHEMBL350966 |
| 6.51 | IC50 | 305.4 | nM | CHEMBL2229659 |
| 6.50 | IC50 | 319.8 | nM | CHEMBL4451080 |
| 6.49 | IC50 | 325.6 | nM | VANILLIN |
| 6.47 | IC50 | 335.7 | nM | CHEMBL4592980 |
| 6.27 | IC50 | 537.9 | nM | CHEMBL4448530 |
| 6.26 | IC50 | 553.2 | nM | CHEMBL4452179 |
| 6.19 | IC50 | 641 | nM | CHEMBL4446283 |
| 5.99 | IC50 | 1026 | nM | CHEMBL4452792 |
| 5.97 | IC50 | 1069 | nM | CHEMBL4449227 |
| 5.93 | IC50 | 1165 | nM | CHEMBL4446283 |
| 5.89 | IC50 | 1294 | nM | CHEMBL4580867 |
| 5.87 | IC50 | 1356 | nM | CHEMBL4457083 |
| 5.87 | IC50 | 1365 | nM | CHEMBL4438332 |
| 5.71 | IC50 | 1934 | nM | CHEMBL4470369 |
| 5.46 | IC50 | 3457 | nM | CHEMBL4453026 |
| 5.45 | IC50 | 3576 | nM | CHEMBL4461534 |
| 5.44 | IC50 | 3597 | nM | CHEMBL4461549 |
| 5.42 | IC50 | 3777 | nM | CHEMBL4461534 |
| 5.33 | IC50 | 4690 | nM | CHEMBL4303781 |
| 5.26 | IC50 | 5484 | nM | CHEMBL4473237 |
| 5.23 | IC50 | 5901 | nM | CHEMBL4465785 |
| 5.20 | IC50 | 6323 | nM | CHEMBL3774575 |
| 5.14 | IC50 | 7172 | nM | CHEMBL4586564 |
| 5.13 | IC50 | 7451 | nM | CHEMBL4548728 |
| 5.10 | IC50 | 7884 | nM | CHEMBL4470427 |
| 5.07 | IC50 | 8574 | nM | CHEMBL4546478 |
| 5.06 | IC50 | 8718 | nM | CHEMBL4445295 |
| 5.02 | IC50 | 9597 | nM | CHEMBL4457958 |
| 5.00 | IC50 | 1.007e+04 | nM | CHEMBL4560434 |
PubChem BioAssay actives
2 with measured affinity, of 46 total; 1 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2178558: Inhibition of TRIM33 (unknown origin) incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | ic50 | 0.1400 | uM |
CTD chemical–gene interactions
39 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, affects expression, decreases methylation | 6 |
| bisphenol A | decreases expression, increases expression | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| TAK-243 | increases sumoylation | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| isobutyl alcohol | affects cotreatment, decreases expression, increases abundance | 1 |
| tamibarotene | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| (+)-JQ1 compound | decreases expression, decreases reaction, increases expression, affects binding, increases reaction (+2 more) | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Caffeine | affects phosphorylation | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
| Gasoline | affects cotreatment, decreases expression, increases abundance | 1 |
| Ivermectin | decreases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
ChEMBL screening assays
47 unique, capped per target: 47 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2186997 | Binding | Inhibition of His6FLAG-tagged TRIM33 isoform B expressed in Escherichia coli assessed as change in melting temperature at 100 uM by thermal shift assay | Fragment-based discovery of bromodomain inhibitors part 2: optimization of phenylisoxazole sulfonamides. — J Med Chem |
Cellosaurus cell lines
5 cell lines: 5 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B8RE | Abcam HCT 116 TRIM33 KO | Cancer cell line | Male |
| CVCL_B9TT | Abcam A-549 TRIM33 KO | Cancer cell line | Male |
| CVCL_TU09 | HAP1 TRIM33 (-) 1 | Cancer cell line | Male |
| CVCL_TU10 | HAP1 TRIM33 (-) 2 | Cancer cell line | Male |
| CVCL_TU11 | HAP1 TRIM33 (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
384 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00208364 | PHASE4 | TERMINATED | A Two Centre Study to Assess the Long-term Performance of the Pinnacle™ Cup With a Metal-on-Metal Bearing in Primary Total Hip Replacement |
| NCT00208377 | PHASE4 | TERMINATED | A Multi-centre Study to Assess the Long-term Performance of the DePuy ASR™ System in Primary Hip Resurfacing Surgery |
| NCT00208390 | PHASE4 | TERMINATED | A Multi-centre Study to Assess the Long-term Performance of the Summit™ Hip in Primary Total Hip Replacement |
| NCT00208429 | PHASE4 | WITHDRAWN | A Multi-centre Study to Assess the Long-term Performance of the Pinnacle™ Cup With a Polyethylene-on-metal Bearing in Primary Total Hip Replacement |
| NCT00208442 | PHASE4 | COMPLETED | A Randomised Single Centre Study to Compare the Long-term Wear Characteristics of Marathon™ and Enduron™ Polyethylene Cup Liners in Primary Total Hip Replacement |
| NCT00208455 | PHASE4 | TERMINATED | A Multi-centre Study to Assess the Long-term Performance of the DePuy PROXIMA™ Hip in Primary Total Hip Replacement |
| NCT00546598 | PHASE4 | TERMINATED | Post-approval Study of the DURALOC® Option Ceramic-on-Ceramic Hip Prosthesis System |
| NCT00715026 | PHASE4 | TERMINATED | Trilogy AB Acetabular Hip System Post Approval Study |
| NCT00872066 | PHASE4 | COMPLETED | A Study to Assess the Long-term Performance of SmartSet® HV and SmartSet® GHV Bone Cements in Primary Total Hip Replacement |
| NCT00872222 | PHASE4 | TERMINATED | A Single Centre Study to Assess the Long-term Performance of the Pinnacle™ Cup With a Ceramic-on-ceramic Bearing in Primary Total Hip Replacement |
| NCT00872547 | PHASE4 | TERMINATED | Multi-Centre Study to Assess the Long-term Performance of the DePuy ASR™ System in Resurfacing and Primary Total Hip Replacement |
| NCT00872573 | PHASE4 | TERMINATED | A Two Centre Study to Assess the Stability and Long-term Performance of the C-Stem™ AMT in a Total Primary Hip Replacement |
| NCT00872794 | PHASE4 | TERMINATED | A Single Centre Study to Assess the Long-term Performance of the DePuy ASR™ System in Primary Hip Resurfacing Surgery |
| NCT00873444 | PHASE4 | TERMINATED | A Randomised Study to Compare Metal Ion Release and Long-term Performance of the Pinnacle™ Cup With a Ceramic-on-Metal or a Metal-on-Metal Bearing |
| NCT01134445 | PHASE4 | TERMINATED | An Electronic Data Capture Study to Assess the Long-term Performance of the DePuy PROXIMA™ Hip in Primary Total Hip Replacement |
| NCT01422564 | PHASE4 | TERMINATED | Metal on Metal Versus Metal on Highly Crossed Linked Polyethylene Sytem |
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Related Atlas pages
- Associated diseases: developmental dysplasia of the hip
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): developmental dysplasia of the hip, developmental dysplasia of the hip 4, ovarian cancer