TRIM34
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Summary
TRIM34 (tripartite motif containing 34, HGNC:10063) is a protein-coding gene on chromosome 11p15.4, encoding E3 ubiquitin-protein ligase TRIM34 (Q9BYJ4). Functions as antiviral protein and contributes to the defense against retroviral infections.
The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, B-box type 1 and B-box type 2 domain, and a coiled-coil region. Expression of this gene is up-regulated by interferon. This gene is mapped to chromosome 11p15, where it resides within a TRIM gene cluster. Alternative splicing results in multiple transcript variants. A read-through transcript from the upstream TRIM6 gene has also been observed, which results in a fusion product from these neighboring family members.
Source: NCBI Gene 53840 — RefSeq curated summary.
At a glance
- GWAS associations: 5
- Clinical variants (ClinVar): 6 total
- MANE Select transcript:
NM_021616
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:10063 |
| Approved symbol | TRIM34 |
| Name | tripartite motif containing 34 |
| Location | 11p15.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000258659 |
| Ensembl biotype | protein_coding |
| OMIM | 605684 |
| Entrez | 53840 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 8 protein_coding, 1 retained_intron, 1 protein_coding_CDS_not_defined
ENST00000429814, ENST00000491385, ENST00000495668, ENST00000514226, ENST00000870811, ENST00000870812, ENST00000870813, ENST00000870814, ENST00000930054, ENST00000970166
RefSeq mRNA: 3 — MANE Select: NM_021616
NM_001003827, NM_021616, NM_130390
CCDS: CCDS31391
Canonical transcript exons
ENST00000429814 — 8 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002102799 | 5625001 | 5625060 |
| ENSE00003465295 | 5643144 | 5644398 |
| ENSE00003466434 | 5632255 | 5632754 |
| ENSE00003479821 | 5634631 | 5634861 |
| ENSE00003492074 | 5633804 | 5633899 |
| ENSE00003540762 | 5642406 | 5642506 |
| ENSE00003556062 | 5642817 | 5642843 |
| ENSE00003681796 | 5641167 | 5641189 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 90.38.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 4.8291 / max 145.4754, expressed in 1386 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 112819 | 4.7321 | 1383 |
| 112820 | 0.0971 | 45 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 90.38 | gold quality |
| leukocyte | CL:0000738 | 90.04 | gold quality |
| lymph node | UBERON:0000029 | 84.93 | gold quality |
| blood | UBERON:0000178 | 84.51 | gold quality |
| spleen | UBERON:0002106 | 84.44 | gold quality |
| placenta | UBERON:0001987 | 84.05 | gold quality |
| granulocyte | CL:0000094 | 83.73 | gold quality |
| vermiform appendix | UBERON:0001154 | 83.48 | gold quality |
| right adrenal gland | UBERON:0001233 | 83.41 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 83.38 | gold quality |
| rectum | UBERON:0001052 | 82.19 | gold quality |
| left adrenal gland | UBERON:0001234 | 82.10 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 81.54 | gold quality |
| adrenal gland | UBERON:0002369 | 81.52 | gold quality |
| right uterine tube | UBERON:0001302 | 81.43 | gold quality |
| calcaneal tendon | UBERON:0003701 | 81.19 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 80.93 | gold quality |
| duodenum | UBERON:0002114 | 80.70 | gold quality |
| endometrium | UBERON:0001295 | 80.60 | gold quality |
| gall bladder | UBERON:0002110 | 79.85 | gold quality |
| left ovary | UBERON:0002119 | 79.66 | gold quality |
| ovary | UBERON:0000992 | 79.60 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 79.36 | gold quality |
| right ovary | UBERON:0002118 | 79.22 | gold quality |
| small intestine | UBERON:0002108 | 78.92 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 78.90 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 78.85 | gold quality |
| adrenal tissue | UBERON:0018303 | 78.62 | gold quality |
| colonic epithelium | UBERON:0000397 | 78.59 | gold quality |
| right lung | UBERON:0002167 | 78.11 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-4850 | no | 280.04 |
| E-ANND-3 | no | 2.17 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
55 targeting TRIM34, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4747-5P | 100.00 | 67.90 | 2681 |
| HSA-MIR-5196-5P | 100.00 | 67.98 | 2761 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-4779 | 99.86 | 66.50 | 1583 |
| HSA-MIR-4517 | 99.76 | 69.19 | 1867 |
| HSA-MIR-12130 | 99.75 | 65.47 | 452 |
| HSA-MIR-1255A | 99.74 | 68.09 | 744 |
| HSA-MIR-1255B-5P | 99.74 | 68.16 | 741 |
| HSA-MIR-4802-3P | 99.72 | 70.13 | 1273 |
| HSA-MIR-466 | 99.67 | 70.85 | 2863 |
| HSA-MIR-586 | 99.65 | 70.40 | 2051 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-4276 | 99.56 | 67.66 | 2514 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-3609 | 99.52 | 69.89 | 2587 |
| HSA-MIR-548AH-5P | 99.52 | 69.73 | 2626 |
| HSA-MIR-4672 | 99.50 | 71.58 | 2893 |
| HSA-MIR-4251 | 99.40 | 69.19 | 3363 |
| HSA-MIR-145-3P | 99.33 | 67.66 | 764 |
| HSA-MIR-6828-5P | 99.31 | 69.21 | 1433 |
| HSA-MIR-7515 | 99.31 | 68.22 | 1795 |
| HSA-MIR-148A-5P | 99.30 | 68.27 | 1141 |
| HSA-MIR-3191-5P | 99.24 | 66.52 | 1722 |
| HSA-MIR-296-3P | 99.21 | 66.56 | 474 |
| HSA-MIR-146A-3P | 99.13 | 68.99 | 1881 |
Literature-anchored findings (GeneRIF, showing 5)
- Data show there was no distinguished colocalization relationship between the complex of tripartite motif-containing protein 34 (TRIM34)-micronulei and mitochondria. (PMID:27371841)
- TRIM34 proteins contribute to the formation of MGCs. (PMID:31487507)
- TRIM34 restricts HIV-1 and SIV capsids in a TRIM5alpha-dependent manner. (PMID:32282853)
- TRIM34 modulates influenza virus-activated programmed cell death by targeting Z-DNA-binding protein 1 for K63-linked polyubiquitination. (PMID:35065966)
- TRIM34 suppresses non-small-cell lung carcinoma via inducing mTORC1-dependent glucose utilization and promoting cellular death. (PMID:38336254)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Trim34a | ENSMUSG00000056144 |
| mus_musculus | Trim34b | ENSMUSG00000090215 |
| rattus_norvegicus | Trim34 | ENSRNOG00000042686 |
Paralogs (80): MID2 (ENSG00000080561), TRIM9 (ENSG00000100505), MID1 (ENSG00000101871), MEFV (ENSG00000103313), TRIM35 (ENSG00000104228), TRIM14 (ENSG00000106785), TRIM37 (ENSG00000108395), TRIM2 (ENSG00000109654), TRIM3 (ENSG00000110171), TRIM38 (ENSG00000112343), TRIM62 (ENSG00000116525), TRIM67 (ENSG00000119283), TRIM32 (ENSG00000119401), BSPRY (ENSG00000119411), TRIM25 (ENSG00000121060), TRIM6 (ENSG00000121236), TRIM24 (ENSG00000122779), TRIM51 (ENSG00000124900), TRIM28 (ENSG00000130726), TRIM21 (ENSG00000132109), TRIM5 (ENSG00000132256), TRIM22 (ENSG00000132274), TRIM47 (ENSG00000132481), TRIM45 (ENSG00000134253), TRIM29 (ENSG00000137699), TRIM54 (ENSG00000138100), PML (ENSG00000140464), TRIM65 (ENSG00000141569), TRIM43B (ENSG00000144010), TRIM43 (ENSG00000144015), TRIM7 (ENSG00000146054), TRIM41 (ENSG00000146063), TRIM50 (ENSG00000146755), TRIM4 (ENSG00000146833), TRIM55 (ENSG00000147573), TRIM48 (ENSG00000150244), TRIM36 (ENSG00000152503), TRIM11 (ENSG00000154370), TRIM74 (ENSG00000155428), TRIM42 (ENSG00000155890)
Protein
Protein identifiers
E3 ubiquitin-protein ligase TRIM34 — Q9BYJ4 (reviewed: Q9BYJ4)
Alternative names: Interferon-responsive finger protein 1, RING finger protein 21
All UniProt accessions (1): Q9BYJ4
UniProt curated annotations — full annotation on UniProt →
Function. Functions as antiviral protein and contributes to the defense against retroviral infections. Acts as a capsid-specific restriction factor with the help of TRIM5 and prevents infection from non-host-adapted retroviruses. During influenza A virus infection, promotes programmed cell death by targeting ZBP1 for ‘Lys-63’-linked polyubiquitination. In turn, promotes ZBP1 recruitment of RIPK3 to mediate virus-induced programmed necrosis. Negatively regulates the function of mitochondria by enhancing mitochondrial depolarization leading to cytochrome c release and mitochondria-dependent apoptosis. Also promotes the formation of multinucleated giant cells by means of cell fusion and phagocytosis in epithelial cells.
Subunit / interactions. Homotrimer. Interacts (via B-box and SPRY domain) with TRIM5. (Microbial infection) Interacts (via the B30.2/SPRY domain) with HIV-1 capsid complexes.
Subcellular location. Cytoplasm. Mitochondrion.
Tissue specificity. Is the most abundant form. It is highly expressed in the placenta, spleen, colon and peripheral blood leukocytes.
Induction. Up-regulated by interferons.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the TRIM/RBCC family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9BYJ4-1 | 1, Medium | yes |
| Q9BYJ4-2 | 2, Short |
RefSeq proteins (2): NP_001003827, NP_067629* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000315 | Znf_B-box | Domain |
| IPR001841 | Znf_RING | Domain |
| IPR001870 | B30.2/SPRY | Domain |
| IPR003877 | SPRY_dom | Domain |
| IPR003879 | Butyrophylin_SPRY | Domain |
| IPR013083 | Znf_RING/FYVE/PHD | Homologous_superfamily |
| IPR013320 | ConA-like_dom_sf | Homologous_superfamily |
| IPR017907 | Znf_RING_CS | Conserved_site |
| IPR035826 | TRIM34_PRY/SPRY | Domain |
| IPR043136 | B30.2/SPRY_sf | Homologous_superfamily |
| IPR050143 | TRIM/RBCC | Family |
Pfam: PF00622, PF00643, PF15227
UniProt features (23 total): strand 4, binding site 4, sequence variant 3, splice variant 2, helix 2, zinc finger region 2, chain 1, domain 1, mutagenesis site 1, sequence conflict 1, turn 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2EGP | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9BYJ4-F1 | 86.62 | 0.54 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 97; 100; 119; 125
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 121 | reduced association with trim5. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-877300 | Interferon gamma signaling |
MSigDB gene sets: 125 (showing top):
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_DN, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, GRAESSMANN_RESPONSE_TO_MC_AND_SERUM_DEPRIVATION_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GOBP_DEFENSE_RESPONSE_TO_OTHER_ORGANISM, GOBP_POST_TRANSLATIONAL_PROTEIN_MODIFICATION, GOBP_DEFENSE_RESPONSE_TO_VIRUS, CHEN_HOXA5_TARGETS_9HR_DN, GOBP_RESPONSE_TO_VIRUS, HOWLIN_CITED1_TARGETS_1_DN, HOWLIN_CITED1_TARGETS_2_DN, ZHENG_FOXP3_TARGETS_IN_THYMUS_UP, ZHENG_FOXP3_TARGETS_IN_T_LYMPHOCYTE_DN, BOYLAN_MULTIPLE_MYELOMA_C_CLUSTER_DN
GO Biological Process (5): regulation of gene expression (GO:0010468), protein ubiquitination (GO:0016567), innate immune response (GO:0045087), defense response to virus (GO:0051607), regulation of primary metabolic process (GO:0080090)
GO Molecular Function (6): zinc ion binding (GO:0008270), identical protein binding (GO:0042802), ubiquitin protein ligase activity (GO:0061630), protein binding (GO:0005515), transferase activity (GO:0016740), metal ion binding (GO:0046872)
GO Cellular Component (3): cytoplasm (GO:0005737), mitochondrion (GO:0005739), cytosol (GO:0005829)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Interferon Signaling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cytoplasm | 2 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| protein modification by small protein conjugation | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| defense response | 1 |
| response to virus | 1 |
| regulation of metabolic process | 1 |
| primary metabolic process | 1 |
| transition metal ion binding | 1 |
| protein binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| intracellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
588 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRIM34 | TRAT1 | Q6PIZ9 | 923 |
| TRIM34 | BBOX1 | O75936 | 829 |
| TRIM34 | TNPO3 | Q9Y5L0 | 581 |
| TRIM34 | TNPO1 | Q92973 | 533 |
| TRIM34 | BTBD2 | Q9BX70 | 494 |
| TRIM34 | BTBD1 | Q9H0C5 | 494 |
| TRIM34 | TRIM56 | Q9BRZ2 | 487 |
| TRIM34 | OR52B6 | Q8NGF0 | 476 |
| TRIM34 | MYC | P01106 | 474 |
| TRIM34 | TRIM23 | P36406 | 469 |
| TRIM34 | IKBKE | Q14164 | 467 |
| TRIM34 | TRIM66 | O15016 | 448 |
| TRIM34 | PRY | O14603 | 447 |
| TRIM34 | TRIM28 | Q13263 | 423 |
| TRIM34 | TRIM24 | O15164 | 418 |
IntAct
8 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRIM5 | TRIM34 | psi-mi:“MI:0915”(physical association) | 0.550 |
| UBE2U | TRIM34 | psi-mi:“MI:0915”(physical association) | 0.370 |
| HIP2 | TRIM34 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TRIM34 | BIRC2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MNAT1 | TRIM34 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TRIM34 | MKRN3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TRIM34 | TRIM6-TRIM34 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (37): TRIM34 (Affinity Capture-Western), TRIM6-TRIM34 (Affinity Capture-MS), ZWINT (Affinity Capture-MS), TRIM5 (Affinity Capture-MS), TRIM6 (Affinity Capture-MS), ZBP1 (Biochemical Activity), UBE2N (Reconstituted Complex), UBE2D2 (Reconstituted Complex), TRIM34 (Affinity Capture-MS), TRIM34 (Affinity Capture-Western), ZBP1 (Affinity Capture-Western), ZBP1 (Reconstituted Complex), RIPK3 (Affinity Capture-Western), TRIM34 (Affinity Capture-MS), FASN (Affinity Capture-MS)
ESM2 similar proteins: A0A3B3IT33, A6NCK2, A6NDI0, A6NGJ6, A6NI03, A6NLI5, C9J1S8, I1YAP6, K7N6K2, P0CI25, P0CI26, P15533, Q0PF16, Q1ACD5, Q1ACD6, Q1ACD7, Q1ACD8, Q2YEM8, Q2YEM9, Q2YEN0, Q2YEN2, Q3ZEE5, Q587N6, Q587N7, Q5BN31, Q5C8T6, Q5C8T8, Q5C8U1, Q5C8U3, Q5C8U4, Q5D7H7, Q5D7H8, Q5D7I0, Q5D7I1, Q5D7I2, Q5D7I3, Q5D7I5, Q5D7I6, Q5D7I9, Q5D7J0
Diamond homologs: A0JN74, A6NCK2, A6NDI0, A6NGJ6, A6NI03, A6NK02, A6NLI5, B1H278, C9J1S8, K7N6K2, O00635, O15553, O19085, O77666, P0CI25, P0CI26, P14373, P15533, P18892, P19474, Q02084, Q0PF16, Q12899, Q13410, Q1ACD5, Q1ACD6, Q1ACD7, Q1ACD8, Q1XHU0, Q2T9Z0, Q2YEM8, Q2YEM9, Q2YEN0, Q2YEN2, Q3UWZ0, Q3ZEE5, Q495X7, Q587N6, Q587N7, Q58DK8
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| Ub:E2 | “up-regulates activity” | TRIM34 | ubiquitination |
Disease & clinical
Clinical variants and AI predictions
ClinVar
6 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 0 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1614 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:5632734:G:GT | donor_gain | 1.0000 |
| 11:5633896:G:GT | donor_gain | 1.0000 |
| 11:5633933:G:GT | donor_gain | 1.0000 |
| 11:5633934:A:T | donor_gain | 1.0000 |
| 11:5633945:GACCT:G | donor_gain | 1.0000 |
| 11:5634629:A:AG | acceptor_gain | 1.0000 |
| 11:5634630:G:GG | acceptor_gain | 1.0000 |
| 11:5634859:CAG:C | donor_loss | 1.0000 |
| 11:5634860:AGGTA:A | donor_loss | 1.0000 |
| 11:5634861:GG:G | donor_loss | 1.0000 |
| 11:5634862:G:GC | donor_loss | 1.0000 |
| 11:5634862:GT:G | donor_loss | 1.0000 |
| 11:5620021:CAGGT:C | donor_loss | 0.9900 |
| 11:5620023:GGTA:G | donor_loss | 0.9900 |
| 11:5620024:G:C | donor_loss | 0.9900 |
| 11:5620025:T:A | donor_loss | 0.9900 |
| 11:5633897:A:T | donor_gain | 0.9900 |
| 11:5633907:G:GT | donor_gain | 0.9900 |
| 11:5633958:G:GT | donor_gain | 0.9900 |
| 11:5633959:G:GT | donor_gain | 0.9900 |
| 11:5633959:G:T | donor_gain | 0.9900 |
| 11:5634629:AGTAT:A | acceptor_gain | 0.9900 |
| 11:5634630:GT:G | acceptor_gain | 0.9900 |
| 11:5634630:GTAT:G | acceptor_gain | 0.9900 |
| 11:5634630:GTATC:G | acceptor_gain | 0.9900 |
| 11:5634858:GCAG:G | donor_gain | 0.9900 |
| 11:5643142:A:AG | acceptor_gain | 0.9900 |
| 11:5643143:G:GG | acceptor_gain | 0.9900 |
| 11:5621611:T:TA | donor_gain | 0.9800 |
| 11:5621612:A:AA | donor_gain | 0.9800 |
AlphaMissense
3229 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:5643323:T:A | W361R | 0.985 |
| 11:5643323:T:C | W361R | 0.985 |
| 11:5643293:T:A | W351R | 0.981 |
| 11:5643293:T:C | W351R | 0.981 |
| 11:5643578:T:C | F446L | 0.971 |
| 11:5643580:T:A | F446L | 0.971 |
| 11:5643580:T:G | F446L | 0.971 |
| 11:5634670:T:C | F187L | 0.970 |
| 11:5634672:T:A | F187L | 0.970 |
| 11:5634672:T:G | F187L | 0.970 |
| 11:5643295:G:C | W351C | 0.968 |
| 11:5643295:G:T | W351C | 0.968 |
| 11:5643617:T:C | F459L | 0.966 |
| 11:5643619:C:A | F459L | 0.966 |
| 11:5643619:C:G | F459L | 0.966 |
| 11:5643332:G:T | G364W | 0.965 |
| 11:5643573:T:A | V444D | 0.959 |
| 11:5643333:G:A | G364E | 0.958 |
| 11:5643332:G:A | G364R | 0.951 |
| 11:5643332:G:C | G364R | 0.951 |
| 11:5643548:T:C | F436L | 0.946 |
| 11:5643550:C:A | F436L | 0.946 |
| 11:5643550:C:G | F436L | 0.946 |
| 11:5632650:T:C | F107L | 0.945 |
| 11:5632652:C:A | F107L | 0.945 |
| 11:5632652:C:G | F107L | 0.945 |
| 11:5643579:T:C | F446S | 0.945 |
| 11:5643546:T:A | V435D | 0.943 |
| 11:5643294:G:C | W351S | 0.941 |
| 11:5643542:G:T | G434W | 0.938 |
dbSNP variants (sampled 300 via entrez): RS1000011327 (11:5630522 G>T), RS1000043628 (11:5630215 A>T), RS1000139707 (11:5629996 G>A), RS1000165634 (11:5627135 T>G), RS1000205321 (11:5636909 G>A), RS1000218152 (11:5642596 C>A,T), RS1000246603 (11:5624869 T>C,G), RS1000409803 (11:5621343 TTC>T), RS1000514974 (11:5637042 G>A,T), RS1000575774 (11:5636708 A>G), RS1000622586 (11:5620359 A>G), RS1000685025 (11:5634115 A>G), RS1000725197 (11:5619801 C>G), RS1001029880 (11:5621605 T>C), RS1001045452 (11:5631636 G>C)
Disease associations
OMIM: gene MIM:605684 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010725_20 | Malaria | 4.000000e-69 |
| GCST010725_33 | Malaria | 2.000000e-67 |
| GCST010725_51 | Malaria | 1.000000e-55 |
| GCST90002391_237 | Mean corpuscular hemoglobin concentration | 1.000000e-12 |
| GCST90002403_238 | Red blood cell count | 2.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004528 | mean corpuscular hemoglobin concentration |
| EFO:0004305 | erythrocyte count |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
19 total (human), top 19 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression | 2 |
| Doxorubicin | decreases expression, increases expression | 2 |
| Silicon Dioxide | decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| bisphenol S | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Vehicle Emissions | decreases expression, increases abundance | 1 |
| Cisplatin | increases expression | 1 |
| Dexamethasone | affects cotreatment, decreases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Indomethacin | affects cotreatment, decreases expression | 1 |
| Oxygen | increases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| 1-Methyl-3-isobutylxanthine | affects cotreatment, decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Particulate Matter | decreases expression, increases abundance | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1IC | Abcam A-549 TRIM34 KO 1 | Cancer cell line | Male |
| CVCL_B2QW | Abcam A-549 TRIM34 KO 2 | Cancer cell line | Male |
| CVCL_TU12 | HAP1 TRIM34 (-) 1 | Cancer cell line | Male |
| CVCL_TU13 | HAP1 TRIM34 (-) 2 | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): malaria