TRIM36-IT1

Summary

TRIM36-IT1 (TRIM36 intronic transcript 1, HGNC:41422) is a long non-coding RNA gene on chromosome 5q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41422
Approved symbol	TRIM36-IT1
Name	TRIM36 intronic transcript 1
Location	5q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250472
Ensembl biotype	lncRNA
Entrez	100874338
RNAcentral	URS000059CA50 — lncRNA, 881 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000503723

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000503723 — 1 exons

Exon	Start	End
ENSE00002072555	115148764	115149644

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 87.61.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1401 / max 54.2742, expressed in 32 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62987	0.1401	32

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.61	gold quality
muscle tissue	UBERON:0002385	87.25	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.73	gold quality
colonic epithelium	UBERON:0000397	63.84	silver quality
duodenum	UBERON:0002114	62.04	gold quality
sural nerve	UBERON:0015488	61.46	gold quality
ganglionic eminence	UBERON:0004023	60.08	gold quality
cortical plate	UBERON:0005343	58.58	gold quality
monocyte	CL:0000576	58.15	gold quality
bone marrow	UBERON:0002371	56.16	gold quality
lymph node	UBERON:0000029	55.46	gold quality
endometrium	UBERON:0001295	54.57	silver quality
liver	UBERON:0002107	54.29	gold quality
blood	UBERON:0000178	54.09	gold quality
kidney	UBERON:0002113	51.59	gold quality
corpus callosum	UBERON:0002336	50.87	silver quality
islet of Langerhans	UBERON:0000006	50.68	gold quality
adrenal tissue	UBERON:0018303	50.64	gold quality
superior frontal gyrus	UBERON:0002661	50.52	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.41	gold quality
primary visual cortex	UBERON:0002436	49.93	silver quality
vermiform appendix	UBERON:0001154	49.81	gold quality
prefrontal cortex	UBERON:0000451	48.43	gold quality
body of uterus	UBERON:0009853	48.09	gold quality
left uterine tube	UBERON:0001303	47.61	gold quality
gall bladder	UBERON:0002110	47.17	gold quality
colon	UBERON:0001155	47.02	gold quality
intestine	UBERON:0000160	47.01	gold quality
small intestine	UBERON:0002108	46.85	gold quality
right lobe of liver	UBERON:0001114	46.57	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.58

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.