TRIP12
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Also known as KIAA0045ULFTRIPC
Summary
TRIP12 (thyroid hormone receptor interactor 12, HGNC:12306) is a protein-coding gene on chromosome 2q36.3, encoding E3 ubiquitin-protein ligase TRIP12 (Q14669). E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. It is haploinsufficient (ClinGen: sufficient evidence).
The protein encoded by this gene is an E3 ubiquitin-protein ligase involved in the degradation of the p19ARF/ARF isoform of CDKN2A, a tumor suppressor. The encoded protein also plays a role in the DNA damage response by regulating the stability of USP7, which regulates tumor suppressor p53.
Source: NCBI Gene 9320 — RefSeq curated summary.
At a glance
- Gene–disease (curated): complex neurodevelopmental disorder (Definitive, ClinGen) — +2 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 703 total — 64 pathogenic, 33 likely-pathogenic
- Phenotypes (HPO): 38
- Dosage sensitivity (ClinGen): haploinsufficiency sufficient evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_001348323
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:12306 |
| Approved symbol | TRIP12 |
| Name | thyroid hormone receptor interactor 12 |
| Location | 2q36.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0045, ULF, TRIPC |
| Ensembl gene | ENSG00000153827 |
| Ensembl biotype | protein_coding |
| OMIM | 604506 |
| Entrez | 9320 |
Gene structure
Transcript identifiers
Ensembl transcripts: 86 — 75 protein_coding, 8 retained_intron, 3 nonsense_mediated_decay
ENST00000283943, ENST00000343290, ENST00000389044, ENST00000389045, ENST00000409677, ENST00000418123, ENST00000428959, ENST00000430954, ENST00000435716, ENST00000453485, ENST00000459841, ENST00000461189, ENST00000470302, ENST00000477441, ENST00000479037, ENST00000487178, ENST00000495322, ENST00000675423, ENST00000675453, ENST00000675903, ENST00000704577, ENST00000704578, ENST00000704579, ENST00000704580, ENST00000704581, ENST00000704582, ENST00000704583, ENST00000704584, ENST00000704585, ENST00000704586, ENST00000855111, ENST00000855112, ENST00000855113, ENST00000855114, ENST00000855115, ENST00000855116, ENST00000855117, ENST00000855118, ENST00000855119, ENST00000855120, ENST00000855121, ENST00000855122, ENST00000855123, ENST00000855124, ENST00000855125, ENST00000932274, ENST00000932275, ENST00000932276, ENST00000932277, ENST00000932278, ENST00000932279, ENST00000932280, ENST00000932281, ENST00000932282, ENST00000932283, ENST00000932284, ENST00000932285, ENST00000932286, ENST00000932287, ENST00000932288, ENST00000932289, ENST00000932290, ENST00000932291, ENST00000932292, ENST00000932293, ENST00000932294, ENST00000960281, ENST00000960282, ENST00000960283, ENST00000960284, ENST00000960285, ENST00000960286, ENST00000960287, ENST00000960288, ENST00000960289, ENST00000960290, ENST00000960291, ENST00000960292, ENST00000960293, ENST00000960294, ENST00000960295, ENST00000960296, ENST00000960297, ENST00000960298, ENST00000960299, ENST00000960300
RefSeq mRNA: 26 — MANE Select: NM_001348323
NM_001284214, NM_001284215, NM_001284216, NM_001348315, NM_001348316, NM_001348317, NM_001348318, NM_001348319, NM_001348320, NM_001348321, NM_001348322, NM_001348323, NM_001348324, NM_001348325, NM_001348326, NM_001348327, NM_001348328, NM_001348329, NM_001348330, NM_001348331, NM_001348332, NM_001348333, NM_001348334, NM_001348335, NM_001348336, NM_004238
CCDS: CCDS33391, CCDS63145, CCDS63146, CCDS92961, CCDS92962, CCDS92963, CCDS92964, CCDS92965, CCDS92966
Canonical transcript exons
ENST00000675903 — 42 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001012584 | 229778876 | 229778990 |
| ENSE00001012586 | 229778433 | 229778587 |
| ENSE00001012589 | 229771519 | 229771632 |
| ENSE00001012590 | 229774097 | 229774261 |
| ENSE00001012597 | 229796591 | 229796782 |
| ENSE00001012598 | 229799283 | 229799383 |
| ENSE00001012601 | 229787505 | 229787661 |
| ENSE00001012602 | 229807708 | 229807864 |
| ENSE00001012603 | 229769231 | 229769325 |
| ENSE00001012608 | 229792973 | 229793145 |
| ENSE00001012609 | 229795179 | 229795330 |
| ENSE00001012611 | 229802252 | 229802459 |
| ENSE00001155807 | 229789611 | 229789762 |
| ENSE00001504758 | 229791124 | 229791251 |
| ENSE00001504759 | 229791866 | 229792065 |
| ENSE00001510539 | 229805730 | 229805883 |
| ENSE00001510547 | 229860406 | 229860531 |
| ENSE00001940595 | 229921880 | 229922009 |
| ENSE00002228607 | 229788798 | 229788940 |
| ENSE00002310311 | 229785757 | 229785855 |
| ENSE00003460176 | 229879982 | 229880128 |
| ENSE00003462555 | 229815273 | 229815308 |
| ENSE00003473249 | 229808252 | 229808369 |
| ENSE00003515596 | 229815099 | 229815194 |
| ENSE00003523632 | 229803571 | 229803689 |
| ENSE00003549126 | 229830756 | 229830839 |
| ENSE00003556213 | 229777315 | 229777479 |
| ENSE00003557124 | 229811136 | 229811204 |
| ENSE00003579098 | 229814233 | 229814325 |
| ENSE00003579916 | 229798875 | 229799049 |
| ENSE00003585414 | 229858772 | 229859574 |
| ENSE00003588386 | 229840822 | 229840927 |
| ENSE00003591306 | 229803999 | 229804227 |
| ENSE00003592677 | 229797690 | 229797831 |
| ENSE00003597698 | 229829193 | 229829288 |
| ENSE00003609432 | 229792153 | 229792226 |
| ENSE00003635736 | 229813870 | 229814031 |
| ENSE00003652845 | 229836848 | 229836984 |
| ENSE00003666375 | 229810880 | 229811045 |
| ENSE00003679901 | 229818364 | 229818512 |
| ENSE00003786613 | 229768616 | 229768719 |
| ENSE00003899161 | 229763837 | 229767750 |
Expression profiles
Bgee: expression breadth ubiquitous, 302 present calls, max score 98.87.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 49.2628 / max 332.6233, expressed in 1817 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 34431 | 21.8937 | 1808 |
| 34429 | 14.5890 | 1769 |
| 34435 | 3.3882 | 1352 |
| 34432 | 2.9903 | 1496 |
| 34428 | 1.6502 | 784 |
| 34430 | 1.6270 | 989 |
| 34436 | 1.5181 | 883 |
| 34433 | 1.3394 | 885 |
| 34434 | 0.1935 | 61 |
| 34427 | 0.0735 | 22 |
Top tissues by expression
302 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| calcaneal tendon | UBERON:0003701 | 98.87 | gold quality |
| male germ cell | CL:0000015 | 98.71 | gold quality |
| sperm | CL:0000019 | 98.69 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.54 | gold quality |
| sural nerve | UBERON:0015488 | 97.90 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.86 | gold quality |
| left testis | UBERON:0004533 | 97.82 | gold quality |
| right testis | UBERON:0004534 | 97.80 | gold quality |
| amniotic fluid | UBERON:0000173 | 97.51 | gold quality |
| stromal cell of endometrium | CL:0002255 | 97.44 | gold quality |
| testis | UBERON:0000473 | 97.43 | gold quality |
| tendon | UBERON:0000043 | 97.40 | gold quality |
| tonsil | UBERON:0002372 | 97.26 | gold quality |
| gluteal muscle | UBERON:0002000 | 96.73 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 96.66 | gold quality |
| bone marrow cell | CL:0002092 | 96.63 | gold quality |
| olfactory bulb | UBERON:0002264 | 96.60 | gold quality |
| ganglionic eminence | UBERON:0004023 | 96.60 | gold quality |
| adult organism | UBERON:0007023 | 96.58 | gold quality |
| cartilage tissue | UBERON:0002418 | 96.55 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 96.34 | gold quality |
| ventricular zone | UBERON:0003053 | 96.32 | gold quality |
| corpus callosum | UBERON:0002336 | 96.18 | gold quality |
| corpus epididymis | UBERON:0004359 | 96.18 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 96.14 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.10 | gold quality |
| oral cavity | UBERON:0000167 | 96.09 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 96.08 | gold quality |
| gastrocnemius | UBERON:0001388 | 95.99 | gold quality |
| type B pancreatic cell | CL:0000169 | 95.90 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.44 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): HNF1B
miRNA regulators (miRDB)
204 targeting TRIP12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-4692 | 100.00 | 67.32 | 2066 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4514 | 99.99 | 67.10 | 1870 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-3617-3P | 99.98 | 67.86 | 918 |
| HSA-MIR-32-5P | 99.98 | 75.21 | 1964 |
| HSA-MIR-92A-3P | 99.98 | 75.21 | 1960 |
| HSA-MIR-92B-3P | 99.98 | 75.25 | 1955 |
| HSA-MIR-25-3P | 99.98 | 74.60 | 1817 |
| HSA-MIR-363-3P | 99.98 | 74.72 | 1821 |
| HSA-MIR-367-3P | 99.98 | 74.83 | 1819 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
Functional genomics
ClinGen dosage: haploinsufficiency 3 (sufficient evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 27)
- TRIP12 promotes degradation of APP-BP1 by catalyzing its ubiquitination, which in turn modulates the neddylation pathway. (PMID:18627766)
- The HECT domain of TRIP12 ubiquitinates substrates of the ubiquitin fusion degradation pathway. (PMID:19028681)
- ULF is a bona fide E3 ligase for ARF and also suggest that ULF is an important target for activating the ARF-p53 axis in human acute myeloid leukaemia cells. (PMID:20699639)
- Data show that the mechanism of BAF155-mediated stabilization of BAF57 involves blocking its ubiquitination by preventing interaction with TRIP12. (PMID:20829358)
- we found somatic mutations of HERC2, HERC3, TRIP12, UBE2Q1 and UBE4B genes in gastric carcinoma and colorectal carcinomas with microsatellite instability (PMID:22124266)
- data indicate that TRADD shuttles dynamically from the cytoplasm into the nucleus to modulate the interaction between p19(Arf) and its E3 ubiquitin ligase ULF, thereby promoting p19(Arf) protein stability and tumour suppression (PMID:22561347)
- Study shows that TRIP12 and UBR5, two HECT domain ubiquitin E3 ligases, control accumulation of RNF168, a rate-limiting component of a pathway that ubiquitylates histones after DNA breakage. (PMID:22884692)
- HUWE1 and TRIP12 collaborate in degradation of ubiquitin-fusion proteins and misframed ubiquitin. (PMID:23209776)
- An exon3-skipping event in TRIP12 was detected in acute myeloid leukemia patients at remission (PMID:24961348)
- Data indicate that E3 ubiquitin ligase thyroid hormone receptor-interacting protein 12 (TRIP12) promotes proteasomal degradation of pancreas transcription factor 1a (PTF1a)and regulates PTF1a activities. (PMID:25355311)
- p16 overexpression led to downregulation of TRIP12, which in turn led to increased RNF168 levels, repressed DNA damage repair (DDR), increased 53BP1 foci and enhanced radioresponsiveness. (PMID:27425591)
- modulatory role for Trip12 in the USP7-dependent DNA damage response (PMID:27800609)
- We describe the TRIP12-associated phenotype, showing that TRIP12 is a risk gene for non-syndromic intellectual disability with and without autism spectrum disorder, and that TRIP12 mutation carriers present with a broad phenotypic range within the neurodevelopmental phenotypes. (PMID:27848077)
- nine presented pathogenic variants further document that TRIP12 haploinsufficiency causes a childhood-onset neurodevelopmental disorder (PMID:28251352)
- Clark-Baraitser syndrome is associated with a nonsense alteration in the autosomal gene TRIP12. (PMID:31814248)
- The E3 ubiquitin ligase TRIP12 participates in cell cycle progression and chromosome stability. (PMID:31964993)
- Novel de novo TRIP12 mutation reveals variable phenotypic presentation while emphasizing core features of TRIP12 variations. (PMID:32424948)
- The Ubiquitin Ligase TRIP12 Limits PARP1 Trapping and Constrains PARP Inhibitor Efficiency. (PMID:32755579)
- TRIP12 promotes small-molecule-induced degradation through K29/K48-branched ubiquitin chains. (PMID:33567268)
- Proteasomal degradation of the tumour suppressor FBW7 requires branched ubiquitylation by TRIP12. (PMID:33824312)
- TRIP12 has an inhibitory role in Epithelial-Mesenchymal Transition (EMT) and possibly, metastasis (PMID:33963176)
- TRIP12 ubiquitination of glucocerebrosidase contributes to neurodegeneration in Parkinson’s disease. (PMID:34644545)
- Episignature Mapping of TRIP12 Provides Functional Insight into Clark-Baraitser Syndrome. (PMID:36430143)
- Small molecule Z363 co-regulates TAF10 and MYC via the E3 ligase TRIP12 to suppress tumour growth. (PMID:36639831)
- The neurodevelopmental and facial phenotype in individuals with a TRIP12 variant. (PMID:36747006)
- Analysis of Ku70 S155 Phospho-Specific BioID2 Interactome Identifies Ku Association with TRIP12 in Response to DNA Damage. (PMID:37108203)
- The E3 ubiquitin ligase TRIP12 is required for pancreatic acinar cell plasticity and pancreatic carcinogenesis. (PMID:38924548)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | trip12 | ENSDARG00000061397 |
| mus_musculus | Trip12 | ENSMUSG00000026219 |
| rattus_norvegicus | Trip12 | ENSRNOG00000016963 |
Paralogs (24): HECW1 (ENSG00000002746), UBE3C (ENSG00000009335), NEDD4L (ENSG00000049759), NEDD4 (ENSG00000069869), ITCH (ENSG00000078747), HACE1 (ENSG00000085382), HUWE1 (ENSG00000086758), HECTD1 (ENSG00000092148), UBR5 (ENSG00000104517), SMURF2 (ENSG00000108854), UBE3A (ENSG00000114062), AREL1 (ENSG00000119682), WWP1 (ENSG00000123124), HERC2 (ENSG00000128731), HECW2 (ENSG00000138411), HERC3 (ENSG00000138641), HERC6 (ENSG00000138642), HERC5 (ENSG00000138646), HERC4 (ENSG00000148634), UBE3B (ENSG00000151148), HECTD2 (ENSG00000165338), HECTD4 (ENSG00000173064), WWP2 (ENSG00000198373), SMURF1 (ENSG00000198742)
Protein
Protein identifiers
E3 ubiquitin-protein ligase TRIP12 — Q14669 (reviewed: Q14669)
Alternative names: E3 ubiquitin-protein ligase for Arf, HECT-type E3 ubiquitin transferase TRIP12, Thyroid receptor-interacting protein 12
All UniProt accessions (17): Q14669, A0A6Q8PGG9, A0A6Q8PHK0, A0A994J4J0, A0A994J4J6, A0A994J4S0, A0A994J569, A0A994J752, A0A994J755, A0A994J7J0, C9JLD7, C9JLJ5, C9JSX9, F8W9P3, G5E9G6, H7C1L9, H7C2Y1
UniProt curated annotations — full annotation on UniProt →
Function. E3 ubiquitin-protein ligase involved in ubiquitin fusion degradation (UFD) pathway and regulation of DNA repair. Part of the ubiquitin fusion degradation (UFD) pathway, a process that mediates ubiquitination of protein at their N-terminus, regardless of the presence of lysine residues in target proteins. Acts as a key regulator of DNA damage response by acting as a suppressor of RNF168, an E3 ubiquitin-protein ligase that promotes accumulation of ‘Lys-63’-linked histone H2A and H2AX at DNA damage sites, thereby acting as a guard against excessive spreading of ubiquitinated chromatin at damaged chromosomes. In normal cells, mediates ubiquitination and degradation of isoform p19ARF/ARF of CDKN2A, a lysine-less tumor suppressor required for p53/TP53 activation under oncogenic stress. In cancer cells, however, isoform p19ARF/ARF and TRIP12 are located in different cell compartments, preventing isoform p19ARF/ARF ubiquitination and degradation. Does not mediate ubiquitination of isoform p16-INK4a of CDKN2A. Also catalyzes ubiquitination of NAE1 and SMARCE1, leading to their degradation. Ubiquitination and degradation of target proteins is regulated by interaction with proteins such as MYC, TRADD or SMARCC1, which disrupt the interaction between TRIP12 and target proteins. Mediates ubiquitination of ASXL1: following binding to N(6)-methyladenosine methylated DNA, ASXL1 is ubiquitinated by TRIP12, leading to its degradation and subsequent inactivation of the PR-DUB complex.
Subunit / interactions. Interacts with MYC; leading to disrupt interaction with isoform p19ARF/ARF of CDKN2A. Interacts with TRADD; leading to disrupt interaction with isoform p19ARF/ARF of CDKN2A. Interacts with SMARCC1; leading to disrupt interaction with SMARCE1.
Subcellular location. Nucleus. Nucleoplasm.
Disease relevance. Clark-Baraitser syndrome (CLABARS) [MIM:617752] An autosomal dominant disease characterized by intellectual disability, delayed psychomotor development, behavioral abnormalities, variable dysmorphic facial features, tall stature, obesity, and macrocephaly. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Preferentially modifies ‘Lys-29’ in the proximal ubiquitin in a ‘Lys-48’-linked di-ubiquitin chain.
Domain organisation. The ARM domain allows tandem binding of ubiquitins.
Pathway. Protein modification; protein ubiquitination.
Similarity. Belongs to the UPL family. K-HECT subfamily.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q14669-1 | 1 | yes |
| Q14669-2 | 2 | |
| Q14669-3 | 3 | |
| Q14669-4 | 4 | |
| Q14669-6 | 5 |
RefSeq proteins (26): NP_001271143, NP_001271144, NP_001271145, NP_001335244, NP_001335245, NP_001335246, NP_001335247, NP_001335248, NP_001335249, NP_001335250, NP_001335251, NP_001335252, NP_001335253, NP_001335254, NP_001335255, NP_001335256, NP_001335257, NP_001335258, NP_001335259, NP_001335260, NP_001335261, NP_001335262, NP_001335263, NP_001335264, NP_001335265, NP_004229 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000569 | HECT_dom | Domain |
| IPR004170 | WWE_dom | Domain |
| IPR011989 | ARM-like | Homologous_superfamily |
| IPR016024 | ARM-type_fold | Homologous_superfamily |
| IPR035983 | Hect_E3_ubiquitin_ligase | Homologous_superfamily |
| IPR037197 | WWE_dom_sf | Homologous_superfamily |
| IPR045322 | HECTD1/TRIP12-like | Family |
| IPR057948 | TPR_TRIP12_N | Domain |
Pfam: PF00632, PF25579
Enzyme classification (BRENDA):
- EC 2.3.2.26 — HECT-type E3 ubiquitin transferase (BRENDA: 14 organisms, 64 substrates, 19 inhibitors, 5 Km, 5 kcat entries)
Substrate kinetics (BRENDA)
1 substrates with measured Km, best-characterized 1. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| [UBC5B]-L-LYSINE | 0.0046–0.037 | 5 |
UniProt features (82 total): modified residue 20, compositionally biased region 17, sequence variant 8, splice variant 7, region of interest 6, repeat 6, mutagenesis site 5, strand 4, sequence conflict 2, domain 2, initiator methionine 1, chain 1, active site 1, helix 1, turn 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9BKS | X-RAY DIFFRACTION | 1.17 |
| 9BKR | X-RAY DIFFRACTION | 1.4 |
| 9GKN | ELECTRON MICROSCOPY | 3.4 |
| 9KEN | ELECTRON MICROSCOPY | 3.63 |
| 9GKM | ELECTRON MICROSCOPY | 3.69 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14669-F1 | 68.06 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 2034 (glycyl thioester intermediate)
Post-translational modifications (20): 2, 12, 119, 127, 142, 223, 352, 354, 1017, 1066, 1072, 1091, 1105, 1392, 1397, 1404, 1451, 1452, 1500, 1502
Mutagenesis-validated functional residues (5):
| Position | Phenotype |
|---|---|
| 2034 | abolishes e3 ubiquitin-protein ligase activity. |
| 2037 | abolishes e3 ubiquitin-protein ligase activity. |
| 2039 | abolishes e3 ubiquitin-protein ligase activity. |
| 2067 | impairs e3 ubiquitin-protein ligase activity. |
| 2067 | abolishes e3 ubiquitin-protein ligase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-983168 | Antigen processing: Ubiquitination & Proteasome degradation |
MSigDB gene sets: 298 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, REACTOME_ADAPTIVE_IMMUNE_SYSTEM, REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION, REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, GOBP_NEGATIVE_REGULATION_OF_GENE_EXPRESSION_EPIGENETIC, WANG_LMO4_TARGETS_DN, TGTGTGA_MIR377, DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN, GOBP_DNA_DAMAGE_RESPONSE, AAAGGGA_MIR204_MIR211
GO Biological Process (9): protein polyubiquitination (GO:0000209), DNA repair (GO:0006281), ubiquitin-dependent protein catabolic process (GO:0006511), DNA damage response (GO:0006974), heterochromatin boundary formation (GO:0033696), proteasome-mediated ubiquitin-dependent protein catabolic process (GO:0043161), regulation of embryonic development (GO:0045995), DNA repair-dependent chromatin remodeling (GO:0140861), protein ubiquitination (GO:0016567)
GO Molecular Function (6): nuclear thyroid hormone receptor binding (GO:0046966), ubiquitin protein ligase activity (GO:0061630), ubiquitin-protein transferase activity (GO:0004842), protein binding (GO:0005515), zinc ion binding (GO:0008270), transferase activity (GO:0016740)
GO Cellular Component (4): nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), nuclear speck (GO:0016607)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Class I MHC mediated antigen processing & presentation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| protein ubiquitination | 2 |
| DNA damage response | 2 |
| cellular anatomical structure | 2 |
| DNA metabolic process | 1 |
| modification-dependent protein catabolic process | 1 |
| cellular response to stress | 1 |
| heterochromatin formation | 1 |
| heterochromatin organization | 1 |
| ubiquitin-dependent protein catabolic process | 1 |
| proteasomal protein catabolic process | 1 |
| embryo development | 1 |
| regulation of multicellular organismal development | 1 |
| chromatin remodeling | 1 |
| protein modification by small protein conjugation | 1 |
| nuclear receptor binding | 1 |
| ubiquitin-protein transferase activity | 1 |
| ubiquitin-like protein ligase activity | 1 |
| ubiquitin-like protein transferase activity | 1 |
| binding | 1 |
| transition metal ion binding | 1 |
| catalytic activity | 1 |
| intracellular membrane-bounded organelle | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| nuclear ribonucleoprotein granule | 1 |
Protein interactions and networks
STRING
3715 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRIP12 | RNF168 | Q8IYW5 | 776 |
| TRIP12 | USP7 | Q93009 | 726 |
| TRIP12 | UBE2S | Q16763 | 715 |
| TRIP12 | UBE2K | P27924 | 676 |
| TRIP12 | RNF146 | Q9NTX7 | 605 |
| TRIP12 | PPIL4 | Q8WUA2 | 590 |
| TRIP12 | UBE4B | O95155 | 575 |
| TRIP12 | SOX6 | P35712 | 550 |
| TRIP12 | RAD18 | Q9NS91 | 549 |
| TRIP12 | SMARCE1 | Q969G3 | 549 |
| TRIP12 | TXNRD2 | Q9NNW7 | 547 |
| TRIP12 | ANAPC10 | Q9UM13 | 545 |
| TRIP12 | MED13L | Q71F56 | 543 |
| TRIP12 | ADNP | Q9H2P0 | 543 |
| TRIP12 | FBXO36 | Q8NEA4 | 541 |
IntAct
154 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CAPN1 | CAPNS1 | psi-mi:“MI:0914”(association) | 0.840 |
| RFXANK | RFXAP | psi-mi:“MI:0914”(association) | 0.780 |
| KBTBD7 | METTL15 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | XPO1 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| EIF3I | EIF3CL | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAG | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.640 |
| TRIP12 | MYC | psi-mi:“MI:0407”(direct interaction) | 0.630 |
| TRIP12 | MYC | psi-mi:“MI:0915”(physical association) | 0.630 |
| TRIP12 | MYC | psi-mi:“MI:0914”(association) | 0.630 |
| TRIP12 | CDKN2A | psi-mi:“MI:0915”(physical association) | 0.600 |
| TRIP12 | CDKN2A | psi-mi:“MI:0407”(direct interaction) | 0.600 |
| YWHAH | BLTP3B | psi-mi:“MI:2364”(proximity) | 0.570 |
| MECP2 | GTPBP10 | psi-mi:“MI:0914”(association) | 0.530 |
| BCAT1 | ARNT | psi-mi:“MI:0914”(association) | 0.530 |
| YWHAZ | BLTP3B | psi-mi:“MI:0914”(association) | 0.530 |
| OPCML | CANX | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (324): TRIP12 (Reconstituted Complex), TRIP12 (Two-hybrid), TRIP12 (Affinity Capture-Western), PTF1A (Affinity Capture-Western), TRIP12 (FRET), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Affinity Capture-MS), TRIP12 (Proximity Label-MS), TRIP12 (Biochemical Activity), TRIP12 (Proximity Label-MS)
ESM2 similar proteins: A8XEA2, B0WMG3, B2RRD7, B3M301, B3MIW0, B3MSI4, B3NU20, B4F6W9, B4GUZ2, B4I100, B4JMQ2, B4JW99, B4L6Q5, B4M7P8, B4NBP4, B4NP88, B4Q068, B4R4H1, C3XRY1, E1B7Q7, F1LP64, F1RCR6, G5E870, O01658, O16810, O60341, O88808, P50586, P55201, Q13416, Q14669, Q16W06, Q24168, Q63028, Q640I9, Q689Z5, Q6AW06, Q6P1G2, Q6ZQ88, Q756E1
Diamond homologs: A0A8C0NGY6, A1CQG2, A1D3C5, A2A5Z6, A2QQ28, A9JRZ0, B0XQ72, B8N7E5, D3ZBM7, D6C652, E1B7Q7, E1C656, F1LP64, F1N6G5, F8W2M1, G0S9J5, G5E870, H2LBU8, O00308, O08759, O13834, O14326, O15033, P39940, P40985, P46934, P46935, P46937, P46938, P51593, P53119, Q03280, Q05086, Q08CZ0, Q09291, Q0CCL1, Q14669, Q15034, Q15386, Q1K9C4
SIGNOR signaling
5 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TRIP12 | “down-regulates quantity by destabilization” | CDKN2A | ubiquitination |
| TRIP12 | “down-regulates activity” | RNF168 | ubiquitination |
| Ub:E2 | “up-regulates activity” | TRIP12 | ubiquitination |
| TRIP12 | “down-regulates quantity by destabilization” | SOX6 | ubiquitination |
| TRIP12 | “down-regulates quantity by destabilization” | NAE1 | ubiquitination |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 179 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Activation of BAD and translocation to mitochondria | 7 | 43.0× | 4e-08 |
| Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex | 7 | 37.9× | 5e-08 |
| SARS-CoV-1 targets host intracellular signalling and regulatory pathways | 7 | 37.9× | 5e-08 |
| Activation of BH3-only proteins | 7 | 28.0× | 5e-07 |
| Intrinsic Pathway for Apoptosis | 9 | 21.2× | 5e-08 |
| RHO GTPases activate PKNs | 7 | 17.9× | 7e-06 |
| FOXO-mediated transcription | 5 | 13.5× | 1e-03 |
| SARS-CoV-1-host interactions | 9 | 12.8× | 3e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| ribosomal large subunit biogenesis | 5 | 13.5× | 6e-03 |
| protein targeting | 6 | 13.4× | 1e-03 |
| intracellular protein localization | 10 | 6.4× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
703 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 64 |
| Likely pathogenic | 33 |
| Uncertain significance | 406 |
| Likely benign | 90 |
| Benign | 34 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1028708 | NM_001348323.3(TRIP12):c.5459dup (p.Ala1821fs) | Pathogenic |
| 1064786 | NM_001348323.3(TRIP12):c.2118_2119insT (p.Thr707fs) | Pathogenic |
| 1069025 | NM_001348323.3(TRIP12):c.1857del (p.Glu619fs) | Pathogenic |
| 1070789 | NM_001348323.3(TRIP12):c.3968+1G>T | Pathogenic |
| 1098379 | NM_001348323.3(TRIP12):c.4646_4668del (p.Leu1549fs) | Pathogenic |
| 1098392 | NM_001348323.3(TRIP12):c.5215del (p.Gln1739fs) | Pathogenic |
| 1164053 | NM_001348323.3(TRIP12):c.2378_2379insT (p.Val794fs) | Pathogenic |
| 1175992 | NM_001348323.3(TRIP12):c.4695+1G>A | Pathogenic |
| 1184101 | NM_001348323.3(TRIP12):c.3779del (p.Arg1260fs) | Pathogenic |
| 1194542 | NM_001348323.3(TRIP12):c.4995del (p.Lys1665fs) | Pathogenic |
| 1285508 | NM_001348323.3(TRIP12):c.4726del (p.Ser1576fs) | Pathogenic |
| 1326281 | NM_001348323.3(TRIP12):c.2776G>T (p.Gly926Ter) | Pathogenic |
| 1700135 | NM_001348323.3(TRIP12):c.4302_4303del (p.Tyr1435fs) | Pathogenic |
| 1703055 | NM_001348323.3(TRIP12):c.3816+2T>A | Pathogenic |
| 1709568 | NM_001348323.3(TRIP12):c.4216-2A>G | Pathogenic |
| 1992332 | NM_001348323.3(TRIP12):c.5452_5453delinsAAACAAATTGTAAATTGTACCA (p.Pro1818fs) | Pathogenic |
| 2258023 | NM_001348323.3(TRIP12):c.5905_5908delinsATATGGTATATTTACTT (p.Arg1969fs) | Pathogenic |
| 2438549 | NM_001348323.3(TRIP12):c.5675del (p.Asn1892fs) | Pathogenic |
| 2446125 | NM_001348323.3(TRIP12):c.3787C>T (p.Arg1263Ter) | Pathogenic |
| 2498135 | NM_001348323.3(TRIP12):c.2065C>T (p.Gln689Ter) | Pathogenic |
| 2504746 | NM_001348323.3(TRIP12):c.334C>T (p.Arg112Ter) | Pathogenic |
| 2578429 | NM_001348323.3(TRIP12):c.3869del (p.Leu1290fs) | Pathogenic |
| 2579158 | NM_001348323.3(TRIP12):c.1012C>T (p.Gln338Ter) | Pathogenic |
| 2584503 | NM_001348323.3(TRIP12):c.4317del (p.Gln1440fs) | Pathogenic |
| 2627078 | NM_001348323.3(TRIP12):c.1787_1800del (p.Met596fs) | Pathogenic |
| 3062612 | GRCh37/hg19 2q36.3(chr2:230591144-230654311)x1 | Pathogenic |
| 3063732 | NM_001348323.3(TRIP12):c.638_639del (p.Arg213fs) | Pathogenic |
| 3254927 | NM_001348323.3(TRIP12):c.2624del (p.Pro875fs) | Pathogenic |
| 3256549 | NM_001348323.3(TRIP12):c.3551del (p.Asn1184fs) | Pathogenic |
| 3340943 | NM_001348323.3(TRIP12):c.3247C>T (p.Arg1083Ter) | Pathogenic |
SpliceAI
6101 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:229767748:ATC:A | acceptor_gain | 1.0000 |
| 2:229767749:TC:T | acceptor_gain | 1.0000 |
| 2:229767750:CC:C | acceptor_gain | 1.0000 |
| 2:229767750:CCTG:C | acceptor_loss | 1.0000 |
| 2:229767751:C:CC | acceptor_gain | 1.0000 |
| 2:229767751:C:T | acceptor_gain | 1.0000 |
| 2:229767755:T:C | acceptor_gain | 1.0000 |
| 2:229767755:T:TC | acceptor_gain | 1.0000 |
| 2:229768715:CCCGA:C | acceptor_gain | 1.0000 |
| 2:229768716:CCGA:C | acceptor_gain | 1.0000 |
| 2:229768716:CCGAC:C | acceptor_gain | 1.0000 |
| 2:229768717:CGA:C | acceptor_gain | 1.0000 |
| 2:229768717:CGAC:C | acceptor_gain | 1.0000 |
| 2:229768718:GA:G | acceptor_gain | 1.0000 |
| 2:229768720:C:CC | acceptor_gain | 1.0000 |
| 2:229769227:TTAC:T | donor_loss | 1.0000 |
| 2:229769228:TA:T | donor_loss | 1.0000 |
| 2:229769229:A:AC | donor_gain | 1.0000 |
| 2:229769229:AC:A | donor_gain | 1.0000 |
| 2:229769230:C:CA | donor_gain | 1.0000 |
| 2:229769230:CC:C | donor_gain | 1.0000 |
| 2:229769230:CCT:C | donor_gain | 1.0000 |
| 2:229769230:CCTG:C | donor_gain | 1.0000 |
| 2:229769230:CCTGT:C | donor_gain | 1.0000 |
| 2:229769321:TCCAG:T | acceptor_gain | 1.0000 |
| 2:229769322:CCAG:C | acceptor_gain | 1.0000 |
| 2:229769322:CCAGC:C | acceptor_gain | 1.0000 |
| 2:229769323:CAG:C | acceptor_gain | 1.0000 |
| 2:229769323:CAGC:C | acceptor_gain | 1.0000 |
| 2:229769324:AG:A | acceptor_gain | 1.0000 |
AlphaMissense
13516 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:229767561:A:G | L1991P | 1.000 |
| 2:229767566:G:C | F1989L | 1.000 |
| 2:229767566:G:T | F1989L | 1.000 |
| 2:229767567:A:G | F1989S | 1.000 |
| 2:229767568:A:G | F1989L | 1.000 |
| 2:229767579:C:T | G1985E | 1.000 |
| 2:229767580:C:A | G1985W | 1.000 |
| 2:229767580:C:G | G1985R | 1.000 |
| 2:229767580:C:T | G1985R | 1.000 |
| 2:229767591:G:T | A1981E | 1.000 |
| 2:229767600:A:G | L1978P | 1.000 |
| 2:229767631:A:C | Y1968D | 1.000 |
| 2:229767631:A:G | Y1968H | 1.000 |
| 2:229767636:G:C | P1966R | 1.000 |
| 2:229767636:G:T | P1966Q | 1.000 |
| 2:229767637:G:A | P1966S | 1.000 |
| 2:229767639:A:C | L1965W | 1.000 |
| 2:229767639:A:G | L1965S | 1.000 |
| 2:229767641:C:A | K1964N | 1.000 |
| 2:229767641:C:G | K1964N | 1.000 |
| 2:229767643:T:C | K1964E | 1.000 |
| 2:229767645:A:C | L1963R | 1.000 |
| 2:229767645:A:G | L1963P | 1.000 |
| 2:229767645:A:T | L1963H | 1.000 |
| 2:229767648:T:C | Y1962C | 1.000 |
| 2:229767649:A:C | Y1962D | 1.000 |
| 2:229767649:A:G | Y1962H | 1.000 |
| 2:229767649:A:T | Y1962N | 1.000 |
| 2:229767650:G:C | N1961K | 1.000 |
| 2:229767650:G:T | N1961K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000017238 (2:229922449 C>T), RS1000024289 (2:229916823 T>A,C), RS1000034276 (2:229855010 T>A), RS1000055648 (2:229874256 T>C), RS1000094298 (2:229843224 A>G), RS1000115869 (2:229904295 G>A), RS1000129906 (2:229922248 T>A,C), RS1000160056 (2:229781111 G>A), RS1000189630 (2:229773071 A>G), RS1000203445 (2:229907763 A>G), RS1000209519 (2:229856443 G>A), RS1000245540 (2:229774550 T>A,C), RS1000257310 (2:229768582 T>C,G), RS1000299121 (2:229843564 A>G), RS1000300182 (2:229814182 T>A,C)
Disease associations
OMIM: gene MIM:604506 | disease phenotypes: MIM:300602, MIM:617752
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Clark-Baraitser syndrome | Definitive | Autosomal dominant |
| syndromic intellectual disability | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| complex neurodevelopmental disorder | Definitive | AD |
Mondo (6): Clark-Baraitser syndrome (MONDO:0030914), neurodevelopmental disorder (MONDO:0700092), prostate cancer (MONDO:0008315), intellectual disability (MONDO:0001071), self-limited familial infantile epilepsy (MONDO:0100024), syndromic intellectual disability (MONDO:0000508)
Orphanet (3): Clark-Baraitser syndrome (Orphanet:600731), Familial prostate cancer (Orphanet:1331), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
38 total (30 of 38 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000154 | Wide mouth |
| HP:0000218 | High palate |
| HP:0000219 | Thin upper lip vermilion |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000286 | Epicanthus |
| HP:0000307 | Pointed chin |
| HP:0000316 | Hypertelorism |
| HP:0000319 | Smooth philtrum |
| HP:0000322 | Short philtrum |
| HP:0000340 | Sloping forehead |
| HP:0000343 | Long philtrum |
| HP:0000369 | Low-set ears |
| HP:0000463 | Anteverted nares |
| HP:0000486 | Strabismus |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000718 | Aggressive behavior |
| HP:0000729 | Autistic behavior |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0000752 | Hyperactivity |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001513 | Obesity |
| HP:0001852 | Sandal gap |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006624_12 | Systolic blood pressure | 6.000000e-11 |
| GCST007876_21 | Estimated glomerular filtration rate | 5.000000e-09 |
| GCST008058_269 | Estimated glomerular filtration rate | 5.000000e-08 |
| GCST008059_224 | Estimated glomerular filtration rate | 3.000000e-07 |
| GCST008152_138 | Weight | 6.000000e-06 |
| GCST009391_883 | Metabolite levels | 5.000000e-06 |
| GCST009391_886 | Metabolite levels | 8.000000e-06 |
| GCST010151_7 | Carotid intima media thickness x smoking interaction | 8.000000e-06 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006335 | systolic blood pressure |
| EFO:0004338 | body weight |
| EFO:0010439 | triacylglycerol 58:12 measurement |
| EFO:0006527 | smoking status measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| C536208 | Clark-Baraitser syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, increases expression | 3 |
| Valproic Acid | affects expression, decreases expression | 3 |
| arsenite | decreases reaction, increases methylation, affects binding | 2 |
| sodium arsenite | increases expression, affects cotreatment, decreases expression, increases abundance | 2 |
| Quercetin | decreases expression, decreases phosphorylation | 2 |
| 7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide | increases expression, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| methylparaben | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| coumarin | decreases phosphorylation | 1 |
| nivalenol | increases expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | decreases ADP-ribosylation, increases ADP-ribosylation | 1 |
| K 7174 | increases expression | 1 |
| ICG 001 | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
Cellosaurus cell lines
3 cell lines: 3 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C7YX | HAP1 TRIP12 (-) 1 | Cancer cell line | Male |
| CVCL_C7YY | HAP1 TRIP12 (-) 2 | Cancer cell line | Male |
| CVCL_C7YZ | HAP1 TRIP12 (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
202 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
| NCT03229928 | Not specified | COMPLETED | Clinical Testing of a Real-Time Behavior Measurement Tool: Measuring Outcomes for CHAnge |
| NCT03232489 | Not specified | UNKNOWN | Study for the Evaluation of the Feasibility of Applying Advanced MRI Scanning in Pediatric Clinical Practice |
Related Atlas pages
- Associated diseases: Clark-Baraitser syndrome, syndromic intellectual disability, complex neurodevelopmental disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Clark-Baraitser syndrome, prostate cancer, self-limited familial infantile epilepsy, syndromic intellectual disability