TRPM2

gene
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Also known as KNP3LTRPC2NUDT9L1NUDT9HEREG1

Summary

TRPM2 (transient receptor potential cation channel subfamily M member 2, HGNC:12339) is a protein-coding gene on chromosome 21q22.3, encoding Transient receptor potential cation channel subfamily M member 2 (O94759). Nonselective, voltage-independent cation channel that mediates Na(+) and Ca(2+) influx, leading to increased cytoplasmic Ca(2+) levels.

The protein encoded by this gene forms a tetrameric cation channel that is permeable to calcium, sodium, and potassium and is regulated by free intracellular ADP-ribose. The encoded protein is activated by oxidative stress and confers susceptibility to cell death. Alternative splicing results in multiple transcript variants encoding distinct protein isoforms. Additional transcript variants of this gene have been described, but their full-length nature is not known.

Source: NCBI Gene 7226 — RefSeq curated summary.

At a glance

  • GWAS associations: 7
  • Clinical variants (ClinVar): 483 total
  • Druggable target: yes — 5 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_003307

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:12339
Approved symbolTRPM2
Nametransient receptor potential cation channel subfamily M member 2
Location21q22.3
Locus typegene with protein product
StatusApproved
AliasesKNP3, LTRPC2, NUDT9L1, NUDT9H, EREG1
Ensembl geneENSG00000142185
Ensembl biotypeprotein_coding
OMIM603749
Entrez7226

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 6 protein_coding, 2 protein_coding_CDS_not_defined

ENST00000300481, ENST00000300482, ENST00000397928, ENST00000397932, ENST00000431901, ENST00000490982, ENST00000498430, ENST00000903457

RefSeq mRNA: 5 — MANE Select: NM_003307 NM_001320350, NM_001320351, NM_001320352, NM_001433516, NM_003307

CCDS: CCDS13710, CCDS82681

Canonical transcript exons

ENST00000397928 — 32 exons

ExonStartEnd
ENSE000010507704436675444366934
ENSE000011362394436917744369343
ENSE000011364234436411444364282
ENSE000012113634435464844354736
ENSE000015309234435362144353865
ENSE000034650344440025944400371
ENSE000034845434439541444395551
ENSE000034889364443513144435217
ENSE000034996424443706244437167
ENSE000035000294439090444391025
ENSE000035093814437899744379197
ENSE000035105374442364544423732
ENSE000035187634438271844382820
ENSE000035291434440590544406037
ENSE000035341914441842344418555
ENSE000035380284443906744439168
ENSE000035465384444078944440905
ENSE000035469414442666044426736
ENSE000035474934442485244424939
ENSE000035620294440514244405260
ENSE000035636944437583344376013
ENSE000035754434439127244391625
ENSE000035809354442567044425827
ENSE000035971844439929644399441
ENSE000035992804439774744397876
ENSE000036042284440659444406765
ENSE000036212574441389144414074
ENSE000036269244441792744418108
ENSE000036301314442701044427111
ENSE000036363764440168144401897
ENSE000036911764437771244377773
ENSE000037498454444169244442644

Expression profiles

Bgee: expression breadth ubiquitous, 176 present calls, max score 89.60.

FANTOM5 (CAGE): breadth broad, TPM avg 9.0269 / max 1145.3604, expressed in 673 samples.

FANTOM5 promoters (16 alternative TSS)

Promoter IDTPM avgSamples expressed
1894705.3413438
1894691.4536335
1894670.8060136
1894830.4226120
1894710.2771119
1894800.252832
1894780.129846
1894720.097925
1894820.056332
1894790.037025

Top tissues by expression

279 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
right frontal lobeUBERON:000281089.60gold quality
caudate nucleusUBERON:000187388.42gold quality
nucleus accumbensUBERON:000188288.02gold quality
monocyteCL:000057687.78gold quality
putamenUBERON:000187487.40gold quality
mononuclear cellCL:000084287.35gold quality
leukocyteCL:000073886.85gold quality
cingulate cortexUBERON:000302786.59gold quality
Brodmann (1909) area 9UBERON:001354086.48gold quality
anterior cingulate cortexUBERON:000983586.47gold quality
granulocyteCL:000009486.04gold quality
right hemisphere of cerebellumUBERON:001489086.01gold quality
dorsolateral prefrontal cortexUBERON:000983485.07gold quality
cerebellar hemisphereUBERON:000224584.98gold quality
cerebellar cortexUBERON:000212984.90gold quality
prefrontal cortexUBERON:000045184.29gold quality
spleenUBERON:000210683.62gold quality
frontal cortexUBERON:000187083.04gold quality
cerebellumUBERON:000203782.92gold quality
neocortexUBERON:000195082.80gold quality
C1 segment of cervical spinal cordUBERON:000646982.51gold quality
telencephalonUBERON:000189382.33gold quality
hypothalamusUBERON:000189882.14gold quality
cerebral cortexUBERON:000095681.58gold quality
amygdalaUBERON:000187681.17gold quality
forebrainUBERON:000189081.13gold quality
brainUBERON:000095580.58gold quality
central nervous systemUBERON:000101780.54gold quality
bloodUBERON:000017880.02gold quality
spinal cordUBERON:000224079.83gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes5.90

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): E2F1

miRNA regulators (miRDB)

35 targeting TRPM2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-118499.9968.191458
HSA-MIR-5195-3P99.9270.921877
HSA-MIR-3934-3P99.7665.511351
HSA-MIR-6764-5P99.7567.892304
HSA-MIR-7-5P99.6770.531809
HSA-MIR-10394-5P99.6566.831852
HSA-MIR-120599.6566.761826
HSA-MIR-1915-3P99.5866.791988
HSA-MIR-444199.4966.563216
HSA-MIR-3191-3P99.4563.94356
HSA-MIR-6722-3P99.4567.621919
HSA-MIR-4685-5P99.2565.991563
HSA-MIR-6837-5P99.2565.471632
HSA-MIR-429399.2265.461263
HSA-MIR-6852-5P99.1766.692073
HSA-MIR-1909-3P99.0366.561662
HSA-MIR-427099.0266.261987
HSA-MIR-3190-5P98.8764.891345
HSA-MIR-873-5P98.8466.901348
HSA-MIR-4755-3P98.7765.591915
HSA-MIR-423-5P98.6967.481522
HSA-MIR-6840-3P98.6865.951923
HSA-MIR-3184-5P98.5667.131491
HSA-MIR-4726-3P98.4963.891385
HSA-MIR-6810-5P98.2966.21975
HSA-MIR-7113-5P97.8867.331735
HSA-MIR-4433A-3P97.7562.821435
HSA-MIR-808997.7466.211698
HSA-MIR-197297.6767.381172
HSA-MIR-55897.5067.16977

Literature-anchored findings (GeneRIF, showing 40)

  • LTRPC2 represents an important intrinsic mechanism that mediates Ca2+ and Na+ overload in response to disturbance of redox state in cell death (PMID:11804595)
  • channel acitvation is dependent on criticial intracellular Ca2+ (PMID:12529379)
  • evidence of role in neutrophil granulocytes by forming an entry pathway for Na(+) and Ca(2+), which is regulated by ADP-ribose and the redox state (PMID:12564954)
  • TRPM2-S is an important physiologic isoform of TRPM2 and modulates channel activity and induction of cell death by oxidative stress through TRPM2-L. (PMID:12594222)
  • oxidative and nitrosative stress induces TRPM2 activation in which mitochondria are induced to produce free ADP-ribose and release it to the cytosol, where its subsequent accumulation induces TRPM2 gating (PMID:15561722)
  • The SSF-TRPM2 protein still maintained H2(O2)-induced Ca2+ influx activity. In addition, we found that the major transcripts in human and mouse start from a novel 5’ non-coding exon; we could not detect any striatum short transcript in mouse brain. (PMID:15708008)
  • TRPM2 is a coincidence detector for adenosine diphosphatae ribose and cyclic adp ribose signaling. (PMID:15808509)
  • LTRPC2 protein is a likely component of the calcium release activated nonselective cation channel in lymphocytes (PMID:16075382)
  • Findings suggest genetic variants of the TRPM2 gene increase risk for BD and support the notion that TRPM2 may be involved in the pathophysiology of bipolar disorder. (PMID:16252251)
  • Data show that one mechanism through which oxidative stress or TNF-alpha mediates cell death is activation of TRPM2, resulting in increased internal calcium, followed by caspase activation and PARP cleavage. (PMID:16306129)
  • gene silencing of TRPM2 abolished the adenosine diphosphoribose - and ConA-mediated inward current. (PMID:16316998)
  • data demonstrate the requirement for CaM in TRPM2 activation; they suggest that Ca(2+) entering through TRPM2 enhances interaction of CaM with TRPM2 at the IQ-like motif in the N terminus, providing crucial positive feedback for channel activation (PMID:16461353)
  • a SIR2 reaction metabolite modulates TRPM2 ion channel (PMID:16565078)
  • Cyclic ADP-ribose and NAADP strongly activate natively expressed TRPM2 chanels in Jurkat T cells. (PMID:16585058)
  • TRPM2 is a potential molecular target for cADPR, which regulates Ca(2+) entry into pancreatic beta-cells at body temperature depending on the production of cADPR-related molecules, thereby regulating insulin secretion. (PMID:16601673)
  • ADP-ribose and Ca2+ in concert behave as a messenger system for agonist-induced influx of Ca2+ through TRPM2 in granulocytes (PMID:16719842)
  • Screening of bipolar affective disorder patients for mutations in TRPM2 led to identification of three novel and four known transitions, indicating TRPM2 as a candidate gene of bipolar affective disorder. (PMID:16733555)
  • detailed expression profile of TRPM2 mRNA within the central nervous system (PMID:16777714)
  • These results taken together suggest that the cysteine residues in the pore region are obligatory for TRPM2 channel function. (PMID:16822940)
  • examined role of a coiled-coil domain in the intracellular C terminus of TRPM2 subunit in subunit interaction and channel assembly (PMID:17060318)
  • in light of the wide-spread expression and growing list of cellular functions of TRPM2, useful therapeutic applications are expected for future drugs that block TRPM2 channels or inhibit their activation–{REVIEW} (PMID:17217061)
  • Tyrosine phosphorylation of TRPM2 by PTPL1 controls activation/function. (PMID:17251321)
  • the transmembrane segment S6 has a role in determining cation versus anion selectivity of TRPM2 and TRPM8 (PMID:17604279)
  • TRPM2 agonist-binding ADPRase domain and the ion gate in the transmembrane region are separately located in the molecule. (PMID:17940282)
  • TRPM2 mediates H2O2-induced increase in endothelial permeability through the activation of Ca2+ entry via TRPM2. (PMID:18048770)
  • TRPM2-mediated Ca2+influx induces chemokine production in monocytes that aggravates inflammatory neutrophil infiltration. (PMID:18542050)
  • The regulation of TRPM2 activation in human neutrophils, is characterized. (PMID:18572241)
  • during conditions of oxidative stress in lymphocytes, TRPM2 acts as a downstream effector of the PARP/poly(ADP-ribose) glycohydrolase pathway through PARP-dependent formation of ADP-ribose. (PMID:18599483)
  • that Glu-960, Gln-981, Asp-987, and Glu-1022 residues are engaged in determining divalent cationic permeation properties of the TRPM2 channel. (PMID:18687688)
  • Study describes the computational identification of a melanoma-enriched antisense transcript, TRPM2-AS, mapped within the locus of TRPM2, an ion channel capable of mediating susceptibility to cell death (PMID:18957938)
  • A variant of the transient receptor potential melastatin 2 (TRPM2) gene may confer susceptibility to parkinsonism-dementia and amyotrophic lateral sclerosis. (PMID:19004782)
  • This study supports a role for TRPM2 in the pathogenesis of bipolar disorder and the G allele of rs1556314 at exon 11 of TRPM2 in BD-I but not bipolar disorder type II (BD-II). (PMID:19133961)
  • functional TRPM2 channels mediate H(2)O(2)-induced Ca(2+) entry in beta-cells, a process potently inhibited by N-(p-amylcinnamoyl)anthranilic acid (PMID:19382906)
  • Data show that TRPM2 and ADPR represent multimodal signaling elements regulating Ca2+ mobilization in beta cells through membrane depolarization, Ca2+ influx, and release of Ca2+ from intracellular stores. (PMID:19454650)
  • These results collectively suggest the requirement for the N-terminal CC domain for protein expression and function, but not subunit interaction, of the TRPM2 channel. (PMID:19652898)
  • Its activation by oxidative stress leads to chemokine production in macrophage, which causes chronic inflammation. (review) (PMID:19749482)
  • [REVIEW] TRPM1 and TRPM2, are localized in intracellular compartments and are involved in melanin synthesis and oxidative stress-induced cell death (PMID:19887679)
  • TRPM2 is essential for prostate cancer cell proliferation and may be a potential target for the selective treatment of prostate cancer. (PMID:20029400)
  • Data demonstrate that TRPM2 is required for the LPS-induced production of IL-6, IL-8, IL-10, and TNF-alpha. (PMID:20107186)
  • The calcium-permeable non-selective cation channel TRPM2 is modulated by cellular acidification. (PMID:20194125)

Cross-species orthologs

7 orthologs

OrganismSymbolGene ID
danio_reriotrpm2ENSDARG00000101641
mus_musculusTrpm2ENSMUSG00000009292
rattus_norvegicusTrpm2ENSRNOG00000001216
caenorhabditis_elegansWBGENE00004149
caenorhabditis_elegansWBGENE00020972
caenorhabditis_elegansWBGENE00021404
caenorhabditis_elegansWBGENE00021408

Paralogs (7): TRPM5 (ENSG00000070985), TRPM3 (ENSG00000083067), TRPM7 (ENSG00000092439), TRPM6 (ENSG00000119121), TRPM4 (ENSG00000130529), TRPM1 (ENSG00000134160), TRPM8 (ENSG00000144481)

Protein

Protein identifiers

Transient receptor potential cation channel subfamily M member 2O94759 (reviewed: O94759)

Alternative names: Estrogen-responsive element-associated gene 1 protein, Long transient receptor potential channel 2, Transient receptor potential channel 7, Transient receptor potential melastatin 2

All UniProt accessions (3): O94759, C9JZQ8, E9PGK7

UniProt curated annotations — full annotation on UniProt →

Function. Nonselective, voltage-independent cation channel that mediates Na(+) and Ca(2+) influx, leading to increased cytoplasmic Ca(2+) levels. Functions as a ligand-gated ion channel, gated by intracellular adenosine diphosphate ribose (ADP-ribose), Ca(2+), warm temperature, and oxidative stress. The precise physiological activators are under debate; the true, physiological activators may be ADP-ribose and ADP-ribose-2’-phosphate. Binding of ADP-ribose to the cytoplasmic Nudix domain causes a conformation change; the channel is primed but still requires Ca(2+) binding to trigger channel opening. Extracellular Ca(2+) passes through the channel and increases channel activity. Contributes to Ca(2+) release from intracellular stores in response to ADP-ribose. Plays a role in numerous processes that involve signaling via intracellular Ca(2+) levels. Besides, mediates the release of lysosomal Zn(2+) stores in response to reactive oxygen species, leading to increased cytosolic Zn(2+) levels. Plays a role in mediating behavorial and physiological responses to moderate heat and thereby contributes to body temperature homeostasis. Plays a role in insulin secretion, a process that requires increased cytoplasmic Ca(2+) levels. Required for normal IFNG and cytokine secretion and normal innate immune immunity in response to bacterial infection. Required for normal phagocytosis and cytokine release by macrophages exposed to zymosan (in vitro). Plays a role in dendritic cell differentiation and maturation, and in dendritic cell chemotaxis via its role in regulating cytoplasmic Ca(2+) levels. Plays a role in the regulation of the reorganization of the actin cytoskeleton and filopodia formation in response to reactive oxygen species via its role in increasing cytoplasmic Ca(2+) and Zn(2+) levels. Confers susceptibility to cell death following oxidative stress. Lacks cation channel activity. Does not mediate cation transport in response to oxidative stress or ADP-ribose. Lacks cation channel activity and negatively regulates the channel activity of isoform 1. Negatively regulates susceptibility to cell death in reposponse to oxidative stress.

Subunit / interactions. Homotetramer. Isoform 1 can interact with isoform 3. This interaction decreases Ca(2+) influx through isoform 1 and suppresses susceptibility to oxidative stress-induced cell death.

Subcellular location. Cell membrane. Perikaryon. Cell projection. Cytoplasmic vesicle. Lysosome Cell membrane Cell membrane Cell membrane.

Tissue specificity. Highly expressed in brain and peripheral blood cells, such as neutrophils. Also detected in bone marrow, spleen, heart, liver and lung. Isoform 2 is found in neutrophil granulocytes.

Post-translational modifications. Phosphorylation of TRPM2 at Thr-740 by protein kinase C (PKC) counteracts the effect of cytosolic Ca(2+) and elevates the temperature threshold.

Activity regulation. Activated by intracellular ADP-ribose, beta-NAD (NAD(+)) and similar compounds, and by oxidative stress caused by reactive oxygen or nitrogen species. Ca(2+) and PI(4,5)P2 are required for channel opening by ADP-ribose. Activation by ADP-ribose and beta-NAD is strongly increased by moderate heat (35 to 40 degrees Celsius). Likewise, reactive oxygen species lower the threshold for activation by moderate heat (37 degrees Celsius). Activated by moderate heat (35 to 40 degrees Celsius). Inactivated by exposure to extracellular pH between 4.0 and 6.5; irreversibly inactivated when open channels are exposed to extracellular pH between 4.0 and 6.5, while pre-exposure of closed channels to extracellular pH 5.5 gives rise to currents that rapidly inactivate, but protects against irreversible inactivation. Inactivated by intracellular ATP. Activated by arachidonic acid. Inhibited by 2-aminoethyl diphenylborinate (2-APB).

Domain organisation. Contains two binding sites for ADP-ribose, one in the N-terminal part of the channel and the other in the C-terminal nudix hydrolase domain. Both sites seem to have a role in channel opening, but the interaction of ADP-ribose with the N-terminal site is absolutely required for channel activation.

Similarity. Belongs to the transient receptor (TC 1.A.4) family. LTrpC subfamily. TRPM2 sub-subfamily.

Isoforms (3)

UniProt IDNamesCanonical?
O94759-11, TRPM2-Lyes
O94759-22
O94759-33, TRPM2-S

RefSeq proteins (4): NP_001307279, NP_001307280, NP_001420445, NP_003298* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000086NUDIX_hydrolase_domDomain
IPR005821Ion_trans_domDomain
IPR015797NUDIX_hydrolase-like_dom_sfHomologous_superfamily
IPR041491TRPM_SLOGDomain
IPR050927TRPMFamily
IPR057366TRPM-likeDomain

Pfam: PF00520, PF18139, PF25508, PF25969

Catalyzed reactions (Rhea), 2 shown:

  • Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
  • Na(+)(in) = Na(+)(out) (RHEA:34963)

UniProt features (226 total): helix 59, strand 51, mutagenesis site 32, turn 25, binding site 15, sequence variant 13, topological domain 10, transmembrane region 6, intramembrane region 3, splice variant 3, region of interest 2, short sequence motif 2, chain 1, domain 1, modified residue 1, disulfide bond 1, sequence conflict 1

Structure

Experimental structures (PDB)

15 structures.

PDBMethodResolution (Å)
8E6UELECTRON MICROSCOPY3.2
6PUOELECTRON MICROSCOPY3.3
8E6VELECTRON MICROSCOPY3.3
8E6QELECTRON MICROSCOPY3.4
6MIXELECTRON MICROSCOPY3.6
7VQ2ELECTRON MICROSCOPY3.68
6PUSELECTRON MICROSCOPY3.7
6PUUELECTRON MICROSCOPY3.7
8E6TELECTRON MICROSCOPY3.7
7VQ1ELECTRON MICROSCOPY3.76
6PURELECTRON MICROSCOPY4.4
8E6SELECTRON MICROSCOPY4.6
8E6RELECTRON MICROSCOPY5.6
6MIZELECTRON MICROSCOPY6.1
6MJ2ELECTRON MICROSCOPY6.36

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-O94759-F178.510.21

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (15): 174; 179; 302; 333; 336; 843; 846; 869; 1073; 1381; 1382; 1431

Post-translational modifications (1): 740

Disulfide bonds (1): 996–1008

Mutagenesis-validated functional residues (32):

PositionPhenotype
215abolishes lowering of temperature threshold for activation in response to reactive oxygen species. abolishes channel act
295abolishes channel activation in response to adp-ribose/ca(2+).
302no significant effect on channel activity; when associated with a-358. abolishes channel activation in response to adp-r
358no significant effect on channel activity; when associated with a-302.
918decreases in sensitivity to pip2.
952strongly reduces channel activity at ph 7.3. increased residual channel activity after exposure to ph 5.5.
958no effect on channel activity.
961mildly decreases channel activity.
962abolishes channel activity.
968abolishes channel activity.
973no effect on channel activity.
980decreases permeability of ca(2+) over na(+).
981increases the permeability of ca(2+) over na(+).
982alters the reversal potential. increases the permeability of ca(2+) over na(+).
982no change in the reversal potential. no change in the ion selectivity to ca(2+) over na(+).
984–985prevents fast inactivation of the channel.
984no change in the reversal potential. no change in the ion selectivity to ca(2+) over na(+).
985no change in the reversal potential. no change in the ion selectivity to ca(2+) over na(+).
995moderately decreases channel activity.
1002strongly increased residual channel activity after exposure to ph 5.5.
1005decreases channel activity.
1007nearly abolishes channel activity.
1077decreases in sensitivity to pip2.
1228–1503loss of channel activity.
1397only slight effect on activity.

Function

Pathways and Gene Ontology

Reactome pathways

2 pathways

IDPathway
R-HSA-3295583TRP channels
R-HSA-6798695Neutrophil degranulation

MSigDB gene sets: 87 (showing top): GOBP_SINGLE_FERTILIZATION, GOBP_TRANSITION_METAL_ION_TRANSPORT, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GGGTGGRR_PAX4_03, GOBP_MONOATOMIC_CATION_TRANSPORT, REACTOME_EFFECTS_OF_PIP2_HYDROLYSIS, GOBP_REGULATION_OF_CYTOSOLIC_CALCIUM_ION_CONCENTRATION, GOBP_MONOATOMIC_ION_HOMEOSTASIS, GOBP_FERTILIZATION, GOBP_CALCIUM_ION_TRANSMEMBRANE_TRANSPORT, ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN, GOBP_TRANSMEMBRANE_TRANSPORT, GOCC_NUCLEAR_ENVELOPE, chr5q31, GOBP_HOMEOSTATIC_PROCESS

GO Biological Process (26): temperature homeostasis (GO:0001659), dendritic cell chemotaxis (GO:0002407), calcium ion transport (GO:0006816), response to heat (GO:0009408), response to purine-containing compound (GO:0014074), regulation of actin cytoskeleton organization (GO:0032956), response to hydroperoxide (GO:0033194), release of sequestered calcium ion into cytosol (GO:0051209), protein homotetramerization (GO:0051289), regulation of filopodium assembly (GO:0051489), cellular response to hydrogen peroxide (GO:0070301), calcium ion transmembrane transport (GO:0070588), cellular response to calcium ion (GO:0071277), cellular response to temperature stimulus (GO:0071502), zinc ion transmembrane transport (GO:0071577), dendritic cell differentiation (GO:0097028), calcium ion transmembrane import into cytosol (GO:0097553), calcium ion import across plasma membrane (GO:0098703), monoatomic ion transport (GO:0006811), sodium ion transport (GO:0006814), manganese ion transport (GO:0006828), calcium-mediated signaling (GO:0019722), monoatomic ion transmembrane transport (GO:0034220), sodium ion transmembrane transport (GO:0035725), transmembrane transport (GO:0055085), manganese ion transmembrane transport (GO:0071421)

GO Molecular Function (11): monoatomic cation channel activity (GO:0005261), calcium channel activity (GO:0005262), sodium channel activity (GO:0005272), manganese ion transmembrane transporter activity (GO:0005384), calcium ion binding (GO:0005509), intracellularly gated calcium channel activity (GO:0015278), mono-ADP-D-ribose binding (GO:0072571), ligand-gated calcium channel activity (GO:0099604), monoatomic ion channel activity (GO:0005216), metal ion binding (GO:0046872), metal ion transmembrane transporter activity (GO:0046873)

GO Cellular Component (11): lysosome (GO:0005764), lysosomal membrane (GO:0005765), plasma membrane (GO:0005886), cytoplasmic vesicle membrane (GO:0030659), specific granule membrane (GO:0035579), cell projection (GO:0042995), perikaryon (GO:0043204), tertiary granule membrane (GO:0070821), ficolin-1-rich granule membrane (GO:0101003), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410)

Reactome top-level categories

Rollup of top-2 pathways:

CategoryPathways
Stimuli-sensing channels1
Innate Immune System1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
metal ion transport3
secretory granule membrane3
cellular anatomical structure3
response to temperature stimulus2
calcium ion transmembrane import into cytosol2
monoatomic cation transmembrane transport2
monoatomic cation transmembrane transporter activity2
monoatomic cation channel activity2
tertiary granule2
multicellular organismal-level homeostasis1
leukocyte chemotaxis1
dendritic cell migration1
response to stress1
response to nitrogen compound1
actin cytoskeleton organization1
regulation of actin filament-based process1
regulation of cytoskeleton organization1
response to oxidative stress1
response to oxygen-containing compound1
intercellular transport1
protein homooligomerization1
protein tetramerization1
filopodium assembly1
regulation of plasma membrane bounded cell projection assembly1
cellular response to reactive oxygen species1
response to hydrogen peroxide1
calcium ion transport1
response to calcium ion1
cellular response to metal ion1
zinc ion transport1
mononuclear cell differentiation1
calcium ion transmembrane transport1
calcium ion import1
inorganic cation import across plasma membrane1
calcium ion import into cytosol1
transport1
monoatomic ion channel activity1
calcium ion transmembrane transporter activity1
sodium ion transmembrane transporter activity1
transition metal ion transmembrane transporter activity1

Protein interactions and networks

STRING

656 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
TRPM2TRPV1Q8NER1782
TRPM2STIM1Q13586729
TRPM2ORAI1Q96D31701
TRPM2STIM2Q9P246671
TRPM2PARGQ86W56669
TRPM2ORAI3Q9BRQ5665
TRPM2ORAI2Q96SN7663
TRPM2TRPC6Q9Y210656
TRPM2RNF24Q9Y225650
TRPM2TRPV2Q9Y5S1640
TRPM2ANK1P16157626
TRPM2PKD2L2Q9NZM6612
TRPM2TRPA1O75762610
TRPM2ANK3Q12955610
TRPM2ANK2Q01484610

IntAct

3 interactions, top by confidence:

ABTypeScore
TRPM2TRPM2psi-mi:“MI:0407”(direct interaction)0.360
PPP1R12ATRPM2psi-mi:“MI:0914”(association)0.350

BioGRID (15): TRPM2 (Affinity Capture-RNA), TRPM2 (Affinity Capture-MS), EFHC1 (Affinity Capture-Western), TRPM2 (Reconstituted Complex), TRPM2 (Affinity Capture-Western), TRIM21 (Affinity Capture-Western), TRPM2 (Affinity Capture-MS), TRPM2 (Affinity Capture-MS), EPPK1 (Cross-Linking-MS (XL-MS)), TRPM2 (Cross-Linking-MS (XL-MS)), TRPM2 (Co-fractionation), TRPM2 (Co-fractionation), TRPM2 (Co-fractionation), TRPM2 (Co-fractionation), TRPM2 (Affinity Capture-RNA)

ESM2 similar proteins: A0A5B9, A6NDV4, A6QLK4, B1AWJ5, E9PTA2, O75051, O94759, P01850, P01851, P01852, P01857, P01859, P01860, P01861, P01869, P01870, P01906, P01909, P03987, P06333, P0DSE2, P0DTU4, P11364, P15151, P15981, P20759, P20762, P32506, P54900, Q1WIM1, Q1WIM3, Q3TMX7, Q6P767, Q6ZRP7, Q7TQ33, Q812F8, Q8N126, Q8NFZ8, Q8R143, Q8R464

Diamond homologs: A0A0R4IMY7, A7T1N0, A8DYE2, E9PTA2, J9SQF3, O94759, Q2TV84, Q2WEA5, Q5XIG0, Q7TN37, Q7Z2W7, Q7Z4N2, Q8BVU5, Q8R455, Q8R4D5, Q8TD43, Q91YD4, Q9BW91, Q9ESQ5, Q9HCF6, Q9JJH7, Q9NZQ8, S5UH55, Q09297, Q8CIR4, Q923J1, Q925B3, Q96QT4, Q9BX84, Q93971

SIGNOR signaling

1 interactions.

AEffectBMechanism
PRKCA“up-regulates activity”TRPM2phosphorylation

Disease & clinical

Clinical variants and AI predictions

ClinVar

483 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance349
Likely benign37
Benign47

Top pathogenic / likely-pathogenic (0)

SpliceAI

9846 predictions. Top by Δscore:

VariantEffectΔscore
21:44350274:AGGTA:Adonor_loss1.0000
21:44354646:A:AGacceptor_gain1.0000
21:44354647:G:GGacceptor_gain1.0000
21:44364110:GCA:Gacceptor_loss1.0000
21:44364111:CAG:Cacceptor_loss1.0000
21:44366094:G:Tdonor_gain1.0000
21:44366095:A:Tdonor_gain1.0000
21:44366749:C:Aacceptor_gain1.0000
21:44366751:CAG:Cacceptor_loss1.0000
21:44366752:A:AGacceptor_gain1.0000
21:44366752:A:Cacceptor_loss1.0000
21:44366752:AGTAC:Aacceptor_gain1.0000
21:44366753:G:GTacceptor_gain1.0000
21:44366753:GT:Gacceptor_gain1.0000
21:44366753:GTAC:Gacceptor_gain1.0000
21:44366753:GTACG:Gacceptor_gain1.0000
21:44366931:ACAG:Adonor_loss1.0000
21:44366932:CAG:Cdonor_loss1.0000
21:44366933:AG:Adonor_loss1.0000
21:44366936:T:Adonor_loss1.0000
21:44376005:A:Tdonor_gain1.0000
21:44376011:G:GTdonor_gain1.0000
21:44377709:TAG:Tacceptor_loss1.0000
21:44377710:AGG:Aacceptor_loss1.0000
21:44377711:G:Tacceptor_loss1.0000
21:44377711:GGT:Gacceptor_gain1.0000
21:44377770:GCAC:Gdonor_gain1.0000
21:44377773:CG:Cdonor_loss1.0000
21:44377774:G:GGdonor_gain1.0000
21:44377775:T:Adonor_loss1.0000

AlphaMissense

9917 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
21:44414056:T:CL1043P0.999
21:44369182:T:AW204R0.998
21:44369182:T:CW204R0.998
21:44414054:C:AN1042K0.998
21:44414054:C:GN1042K0.998
21:44417967:T:AW1063R0.998
21:44417967:T:CW1063R0.998
21:44406037:G:AM930I0.997
21:44406037:G:CM930I0.997
21:44406037:G:TM930I0.997
21:44406633:T:AW944R0.997
21:44406633:T:CW944R0.997
21:44406663:G:CA954P0.997
21:44417934:T:CF1052L0.997
21:44417936:C:AF1052L0.997
21:44417936:C:GF1052L0.997
21:44417969:G:CW1063C0.997
21:44417969:G:TW1063C0.997
21:44390969:T:AW462R0.996
21:44390969:T:CW462R0.996
21:44390988:C:AA468D0.996
21:44395501:T:AW628R0.996
21:44395501:T:CW628R0.996
21:44406738:T:CF979L0.996
21:44406740:C:AF979L0.996
21:44406740:C:GF979L0.996
21:44413914:T:AC996S0.996
21:44413915:G:CC996S0.996
21:44417980:G:CR1067P0.996
21:44390976:G:CR464P0.995

dbSNP variants (sampled 300 via entrez): RS1000000320 (21:44435234 C>T), RS1000028365 (21:44362057 G>A,T), RS1000082273 (21:44434317 G>A), RS1000133480 (21:44428058 C>G), RS1000176336 (21:44415956 G>A), RS1000224832 (21:44381804 G>A), RS1000263579 (21:44413656 C>T), RS1000278629 (21:44381624 G>A), RS1000285585 (21:44380102 C>T), RS1000331617 (21:44418953 C>T), RS1000334874 (21:44377384 G>A), RS1000378641 (21:44413456 T>C), RS1000421945 (21:44428235 T>A), RS1000448634 (21:44409517 C>T), RS1000475714 (21:44363498 C>T)

Disease associations

OMIM: gene MIM:603749 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

7 associations (top):

StudyTraitp-value
GCST003672_11Docetaxel-induced peripheral neuropathy in metastatic castrate-resistant prostate cancer9.000000e-06
GCST007559_10Sleep duration (short sleep)8.000000e-10
GCST009267_16Dental caries (decayed, missing and filled teeth)4.000000e-06
GCST009531_11Body fat percentage4.000000e-08
GCST010206_3Anorectal malformation6.000000e-17
GCST010991_49Parkinson’s disease9.000000e-08
GCST012438_1Interleukin-6 levels in non-alcoholic fatty liver disease x mastiha supplementation interaction8.000000e-09

EFO canonical traits (3, from GWAS)

EFO IDTrait name
EFO:0007800body fat percentage
EFO:0004810interleukin-6 measurement
EFO:0600067mastiha supplement exposure measurement

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL1250402 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

5 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 281,251 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL104CLOTRIMAZOLE456,325
CHEMBL55643COPPER4
CHEMBL752ADENOSINE PHOSPHATE4165,316
CHEMBL808ECONAZOLE424,813
CHEMBL23588FLUFENAMIC ACID234,797

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: vgic — Transient Receptor Potential channels (TRP)

Most potent curated ligand interactions (8 total), top 8:

LigandActionAffinityParameter
tatM2NXAntagonist6.4pIC50
2-APBAntagonist6.1pIC50
Zn2+Channel blocker6.0pIC50
ACAAAntagonist5.8pIC50
cADPRAgonist5.0pEC50
ADP riboseAgonist4.4pEC50
OAADPRActivation4.0pKd
NAADPAgonist3.1pEC50

ChEMBL bioactivities

39 potent at pChembl≥5 of 53 total, top 32 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.89IC5013nMCHEMBL4878260
7.60IC5025nMCHEMBL4161122
6.68IC50210nMSCALARADIAL
6.50IC50320nMCHEMBL173443
6.40IC50398nMCHEMBL4863360
6.39IC50410nMCHEMBL4864346
6.33IC50467nMCHEMBL4856222
6.22IC50600nMCHEMBL127336
6.10IC50788nMCHEMBL4863549
6.08IC50830nMCHEMBL4849043
6.01IC50987nMCHEMBL4856093
6.00IC501000nMCHEMBL169233
5.92IC501200nMCHEMBL169233
5.77IC501700nMCHEMBL173443
5.64IC502290nMCHEMBL6151257
5.59IC502560nMCHEMBL176974
5.58IC502600nMCOPPER
5.55IC502800nMCHEMBL6174866
5.54IC502890nMCHEMBL6148339
5.52IC503000nMCHEMBL3110206
5.52IC503000nMECONAZOLE
5.52IC503000nMCLOTRIMAZOLE
5.51IC503080nMCHEMBL6174567
5.48IC503280nMCHEMBL6164834
5.43IC503700nMCHEMBL4176916
5.40IC504000nMCHEMBL4159037
5.35IC504500nMCHEMBL173443
5.34IC504600nMCHEMBL4174768
5.30IC505000nMCHEMBL169233
5.29IC505100nMCHEMBL4167784
5.21IC506200nMCHEMBL4872096
5.09IC508100nMCHEMBL4873412

PubChem BioAssay actives

35 with measured affinity, of 365 total; 22 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
ethyl 2-[3-[4-(trifluoromethyl)phenyl]-5,6,7,8-tetrahydro-4H-cyclohepta[d]pyrazol-1-yl]acetate1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.0130uM
2-(dimethylamino)-N-(6-oxo-5H-phenanthridin-2-yl)acetamide;hydrate;hydrochloride1503196: Inhibition of human FLAG-tagged TRPM2 expressed in HEK293 cells assessed as reduction in H2O2-induced intracellular calcium flux pretreated for 30 secs followed by H2O2 addition measured for 120 secs by Fluo4-AM dye based fluorescence assayic500.0250uM
[(4aS,4bR,6S,6aS,7R,10aS,10bR,12aS)-7,8-diformyl-1,1,4a,6a,10b-pentamethyl-2,3,4,4b,5,6,7,10,10a,11,12,12a-dodecahydrochrysen-6-yl] acetate1503188: Inhibition of human FLAG-tagged TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced intracellular calcium flux after 30 to 60 mins by whole cell patch clamp electrophysiology methodic500.2100uM
2-[[(E)-3-(4-pentylphenyl)prop-2-enoyl]amino]benzoic acid1359285: Inhibition of human TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced channel currents treated extracellularly after 60 secs by whole cell patch clamp electrophysiology methodic500.3200uM
2-[[(E)-3-[4-(3-nitrophenyl)phenyl]prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.3980uM
5-bromo-2-[[(E)-3-(4-phenylphenyl)prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.4100uM
4-methyl-2-[[(E)-3-(4-pentylphenyl)prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.4670uM
5-(4-piperidin-1-ylbutoxy)-3,4-dihydro-2H-isoquinolin-1-one1503196: Inhibition of human FLAG-tagged TRPM2 expressed in HEK293 cells assessed as reduction in H2O2-induced intracellular calcium flux pretreated for 30 secs followed by H2O2 addition measured for 120 secs by Fluo4-AM dye based fluorescence assayic500.6000uM
2-[[(E)-3-[4-[3-(trifluoromethyl)phenyl]phenyl]prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.7880uM
2-[[(E)-3-[4-(3-fluorophenyl)phenyl]prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.8300uM
5-methyl-2-[[(E)-3-(4-pentylphenyl)prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic500.9870uM
2-diphenylboranyloxyethanamine1065919: Inhibition of human TRPM2 expressed in HEK293 cellsic501.0000uM
2-[[(E)-3-(4-phenylphenyl)prop-2-enoyl]amino]benzoic acid1775860: Inhibition of human TRPM2 expressed in HEK293T cells assessed as blocked of ADPR-activated current by whole cell patch clamp electrophysiologyic502.5600uM
Clotrimazole1065914: Inhibition of TRPM2 (unknown origin)ic503.0000uM
Econazole1065914: Inhibition of TRPM2 (unknown origin)ic503.0000uM
[[(2R,3S,5R)-5-(6-amino-8-phenylpurin-9-yl)-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] [(2R,3S,4R)-3,4,5-trihydroxyoxolan-2-yl]methyl hydrogen phosphate1065917: Antagonist activity at human TRPM2 expressed in HEK293 cells assessed as inhibition of ADPR-induced maximum outward potassium current at +15 mV by whole-cell patch-clamp electrophysiologyic503.0000uM
6-bromo-8-methyl-2-(5-naphthalen-1-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-quinazolin-4-one1359285: Inhibition of human TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced channel currents treated extracellularly after 60 secs by whole cell patch clamp electrophysiology methodic503.7000uM
6-chloro-8-methyl-2-(5-naphthalen-1-yl-1H-pyrazol-4-yl)-2,3-dihydro-1H-quinazolin-4-one1359285: Inhibition of human TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced channel currents treated extracellularly after 60 secs by whole cell patch clamp electrophysiology methodic504.0000uM
6-bromo-8-methyl-2-(5-phenyl-1H-pyrazol-4-yl)-2,3-dihydro-1H-quinazolin-4-one1359285: Inhibition of human TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced channel currents treated extracellularly after 60 secs by whole cell patch clamp electrophysiology methodic504.6000uM
6-chloro-8-methyl-2-(5-phenyl-1H-pyrazol-4-yl)-2,3-dihydro-1H-quinazolin-4-one1359285: Inhibition of human TRPM2 expressed in HEK293 cells assessed as reduction in ADPR-induced channel currents treated extracellularly after 60 secs by whole cell patch clamp electrophysiology methodic505.1000uM
[4-[2-(diethylamino)ethyl]-2-methylimidazo[1,2-a]benzimidazol-1-yl]-(4-phenylphenyl)methanone1784468: Inhibition of human TRPM2 expressed in HEK293T cells cotransfected with GFP assessed as reduction in ADPR-induced current by whole cell patch-clamp methodic506.2000uM
1-benzofuran-2-yl-[4-[2-(diethylamino)ethyl]-2-methylimidazo[1,2-a]benzimidazol-1-yl]methanone1784468: Inhibition of human TRPM2 expressed in HEK293T cells cotransfected with GFP assessed as reduction in ADPR-induced current by whole cell patch-clamp methodic508.1000uM

CTD chemical–gene interactions

33 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
4-amylcinnamoylanthranilic aciddecreases reaction, increases activity, increases reaction, decreases activity3
Adenosine Diphosphate Ribosedecreases reaction, increases activity, increases reaction3
Hydrogen Peroxideincreases activity, increases response to substance3
2-aminoethoxydiphenyl boratedecreases reaction, increases activity, decreases activity2
Calciumdecreases activity, decreases reaction, increases abundance, affects reaction, increases transport2
aristolochic acid Iincreases expression1
diphenoquinonedecreases activity1
ethyl-p-hydroxybenzoateincreases expression1
lead nitratedecreases reaction, increases activity1
zinc chromatedecreases expression, increases abundance1
ferrous chloridedecreases reaction, increases activity1
chromium hexavalent iondecreases expression, increases abundance1
pinostrobinincreases expression1
N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloridedecreases activity1
abrineincreases expression1
Decitabinedecreases expression1
Air Pollutantsaffects expression, increases abundance1
Arsenicaffects methylation1
Benzo(a)pyreneaffects methylation1
Cisplatindecreases reaction, increases activity, increases reaction1
Clotrimazoledecreases activity, decreases reaction, increases abundance1
Econazoledecreases activity, decreases reaction, increases abundance1
Lithiumdecreases reaction, increases expression1
Mercuric Chloridedecreases reaction, increases activity1
Miconazoledecreases reaction, increases activity1
Monensindecreases reaction, increases expression, decreases expression1
Mustard Gasaffects response to substance, decreases activity, decreases reaction, increases abundance, affects reaction1
Ozoneincreases abundance, affects expression1
Valproic Acidincreases methylation1
Eicosapentaenoic Acidincreases reaction, decreases reaction, increases activity1

ChEMBL screening assays

59 unique, capped per target: 58 binding, 1 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1252890BindingInduction of TRPM2 S-nitrosylation in HEK cells assessed as increase in Ca2+ level from extracellular space at 30 uMNitric oxide activates TRP channels by cysteine S-nitrosylation. — Nat Chem Biol
CHEMBL3734573FunctionalInhibition of TRPM2 (unknown origin) expressed in HEK293 cells assessed as effect on agonist-induced Ca2+ changesAgents and methods for treating ischemic and other diseases

Cellosaurus cell lines

6 cell lines: 6 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1LCAbcam Jurkat TRPM2 KOCancer cell lineMale
CVCL_D1R5Abcam K-562 TRPM2 KOCancer cell lineFemale
CVCL_D2MSAbcam Raji TRPM2 KOCancer cell lineMale
CVCL_E2MPHAP1 TRPM2 (-) 1Cancer cell lineMale
CVCL_E2MQHAP1 TRPM2 (-) 2Cancer cell lineMale
CVCL_E2MRHAP1 TRPM2 (-) 3Cancer cell lineMale

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.