TRPM3
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Also known as KIAA1616LTRPC3GON-2
Summary
TRPM3 (transient receptor potential cation channel subfamily M member 3, HGNC:17992) is a protein-coding gene on chromosome 9q21.12-q21.13, encoding Transient receptor potential cation channel subfamily M member 3 (Q9HCF6). Constitutively active, non-selective divalent cation-conducting channel that is permeable to Ca(2+), Mn(2+), and Mg(2+), with a high permeability for Ca(2+).
The product of this gene belongs to the family of transient receptor potential (TRP) channels. TRP channels are cation-selective channels important for cellular calcium signaling and homeostasis. The protein encoded by this gene mediates calcium entry, and this entry is potentiated by calcium store depletion. Alternatively spliced transcript variants encoding different isoforms have been identified.
Source: NCBI Gene 80036 — RefSeq curated summary.
At a glance
- Gene–disease (curated): syndromic complex neurodevelopmental disorder (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 28
- Clinical variants (ClinVar): 288 total — 4 likely-pathogenic
- Phenotypes (HPO): 67
- Druggable target: yes
- MANE Select transcript:
NM_001366145
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17992 |
| Approved symbol | TRPM3 |
| Name | transient receptor potential cation channel subfamily M member 3 |
| Location | 9q21.12-q21.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1616, LTRPC3, GON-2 |
| Ensembl gene | ENSG00000083067 |
| Ensembl biotype | protein_coding |
| OMIM | 608961 |
| Entrez | 80036 |
Gene structure
Transcript identifiers
Ensembl transcripts: 30 — 22 protein_coding, 3 retained_intron, 3 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000354500, ENST00000357533, ENST00000358082, ENST00000360823, ENST00000361823, ENST00000377097, ENST00000377101, ENST00000377105, ENST00000377110, ENST00000377111, ENST00000396280, ENST00000396283, ENST00000396285, ENST00000396292, ENST00000408909, ENST00000437699, ENST00000677594, ENST00000677713, ENST00000704565, ENST00000704566, ENST00000704567, ENST00000704568, ENST00000704569, ENST00000704571, ENST00000704573, ENST00000704574, ENST00000704575, ENST00000704576, ENST00000707140, ENST00000715550
RefSeq mRNA: 23 — MANE Select: NM_001366145
NM_001007470, NM_001007471, NM_001366141, NM_001366142, NM_001366143, NM_001366144, NM_001366145, NM_001366146, NM_001366147, NM_001366148, NM_001366149, NM_001366150, NM_001366151, NM_001366152, NM_001366153, NM_001366154, NM_020952, NM_024971, NM_206944, NM_206945, NM_206946, NM_206947, NM_206948
CCDS: CCDS43835, CCDS65064, CCDS6634, CCDS6635, CCDS6636, CCDS6637, CCDS94418, CCDS94419, CCDS94420
Canonical transcript exons
ENST00000677713 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001413703 | 70625482 | 70625517 |
| ENSE00001577091 | 70591031 | 70591205 |
| ENSE00001577942 | 70761601 | 70761724 |
| ENSE00001577943 | 70784105 | 70784279 |
| ENSE00001578225 | 70620076 | 70620365 |
| ENSE00001580011 | 70598419 | 70598670 |
| ENSE00001580454 | 70635211 | 70635261 |
| ENSE00001580884 | 70603342 | 70603470 |
| ENSE00001582695 | 70553160 | 70553310 |
| ENSE00001583734 | 70615908 | 70616075 |
| ENSE00001583943 | 70625191 | 70625331 |
| ENSE00001583972 | 70681506 | 70681578 |
| ENSE00001584087 | 70549542 | 70549674 |
| ENSE00001585026 | 70827847 | 70828018 |
| ENSE00001585334 | 70552844 | 70553043 |
| ENSE00001585769 | 70639060 | 70639194 |
| ENSE00001587612 | 70610609 | 70610749 |
| ENSE00001588421 | 70621244 | 70621273 |
| ENSE00001603982 | 70640560 | 70640660 |
| ENSE00001610430 | 70618867 | 70619095 |
| ENSE00003527495 | 70843003 | 70843127 |
| ENSE00003562482 | 70862908 | 70863112 |
| ENSE00003641726 | 70846378 | 70846591 |
| ENSE00003649958 | 70864432 | 70864511 |
| ENSE00003904981 | 71121178 | 71121621 |
| ENSE00003906910 | 70529060 | 70537405 |
Expression profiles
Bgee: expression breadth ubiquitous, 193 present calls, max score 99.00.
FANTOM5 (CAGE): breadth broad, TPM avg 5.7626 / max 764.0838, expressed in 372 samples.
FANTOM5 promoters (19 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 100883 | 1.7925 | 227 |
| 100890 | 1.1218 | 196 |
| 100895 | 1.0316 | 162 |
| 100891 | 0.4969 | 172 |
| 100894 | 0.2952 | 107 |
| 100892 | 0.2253 | 115 |
| 100882 | 0.2047 | 55 |
| 100904 | 0.1887 | 53 |
| 100884 | 0.1367 | 43 |
| 100893 | 0.0925 | 55 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pigmented layer of retina | UBERON:0001782 | 99.00 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 93.35 | gold quality |
| medial globus pallidus | UBERON:0002477 | 89.69 | gold quality |
| buccal mucosa cell | CL:0002336 | 89.18 | gold quality |
| globus pallidus | UBERON:0001875 | 88.43 | gold quality |
| sural nerve | UBERON:0015488 | 88.02 | gold quality |
| inferior olivary complex | UBERON:0002127 | 87.39 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 85.24 | gold quality |
| cerebellar vermis | UBERON:0004720 | 84.69 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 84.61 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 84.07 | gold quality |
| primary visual cortex | UBERON:0002436 | 83.87 | gold quality |
| medulla oblongata | UBERON:0001896 | 83.79 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 83.46 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 83.45 | gold quality |
| pons | UBERON:0000988 | 83.40 | gold quality |
| cerebellum | UBERON:0002037 | 83.17 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 83.11 | gold quality |
| endothelial cell | CL:0000115 | 82.20 | silver quality |
| cerebellar cortex | UBERON:0002129 | 82.17 | gold quality |
| ventral tegmental area | UBERON:0002691 | 82.14 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 82.02 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 81.46 | gold quality |
| postcentral gyrus | UBERON:0002581 | 81.29 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 81.06 | gold quality |
| occipital lobe | UBERON:0002021 | 80.71 | gold quality |
| cortical plate | UBERON:0005343 | 80.58 | gold quality |
| nephron tubule | UBERON:0001231 | 80.28 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.04 | gold quality |
| midbrain | UBERON:0001891 | 79.95 | gold quality |
Single-cell (SCXA)
Detected in 12 experiment(s), a significant marker in 9.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 3568.47 |
| E-GEOD-180759 | yes | 3479.28 |
| E-CURD-119 | yes | 2359.06 |
| E-GEOD-137537 | yes | 1395.93 |
| E-MTAB-9154 | yes | 886.93 |
| E-HCAD-35 | yes | 86.34 |
| E-MTAB-7316 | yes | 22.70 |
| E-GEOD-135922 | yes | 18.78 |
| E-GEOD-131882 | no | 2498.97 |
| E-MTAB-6108 | no | 867.68 |
| E-GEOD-109979 | no | 128.63 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): EGR1, PAX6
miRNA regulators (miRDB)
84 targeting TRPM3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-450B-5P | 99.92 | 71.48 | 3175 |
| HSA-MIR-4648 | 99.91 | 67.00 | 710 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-4320 | 99.75 | 65.80 | 793 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-10393-3P | 99.72 | 66.56 | 961 |
| HSA-MIR-6801-5P | 99.72 | 66.50 | 981 |
Literature-anchored findings (GeneRIF, showing 40)
- The hTRPM3 gene is comprised of 24 exons and maps to chromosome 9q-21.12 and is composed of 1555 amino acids with the characteristic six-transmembrane domain of TRPs and is expressed in kidney and, at lesser levels, in brain, testis, and spinal cord (PMID:12672827)
- TRPM3 is the first ion channel activated by sphingolipids. (PMID:15550678)
- the divalent cation selectivity of TRPM3 channels is regulated by altenrative splicing (PMID:15824111)
- we give an overview of the identified TRPM3 variants and compare their functional properties–{REVIEW} (PMID:17217062)
- TRPM3 may have diverse cellular functions depending on the expression of a particular variant while TRPV4 plays a central role in epithelial homoeostasis by modulating epithelial barrier function [review] (PMID:17233610)
- TRPM3 did not reveal a otosclerosis-causing mutation (PMID:18224337)
- data suggest functional relevance of TRPM3 in contractile and proliferating phenotypes of vascular smooth muscle cells (PMID:20360246)
- Our data establish that TRPM3 channels constitute a regulated entry pathway for zinc ions in pancreatic beta-cells (PMID:20401728)
- The inhibition of TRPM1 by zinc ions is primarily due to a short stretch of seven amino acids present only in the pore region of TRPM1 but not of TRPM3. (PMID:21278253)
- Progesterone (0.01-10muM) suppressed TRPM3 activity evoked by pregnenolone sulphate. (PMID:22000496)
- Calmodulin and S100A1 protein interact with N terminus of TRPM3 channel. (PMID:22451665)
- TRPM3-ICF deletion mutation variants are regulatory channel subunits fine-tuning TRPM3 channel activity. (PMID:22961981)
- Data using recombinant proteins expressed in vascular endothelial cells suggest that SigmaR1 (sigma 1-type opioid receptor) is not involved in regulation of calcium signaling via TRPC5/TRPM3 (transient receptor potential cation channels C5/M3). (PMID:23121507)
- Pregnenolone sulfate is a powerful activator of TRPM3-mediated gene transcription, while transcription is completely inhibited by mefenamic acid in cells expressing activated TRPM3 channels. (PMID:24895737)
- Missense mutation in the cation channel, TRPM3, underlies inherited cataract and glaucoma. (PMID:25090642)
- The von Hippel-Lindau tumor suppressor (VHL) represses TRPM3 directly through miR-204 and indirectly through another miR-204 target, Caveolin 1. (PMID:25517751)
- TRPM3 channel activation changes the gene expression pattern of the cells by activating transcription of c-Jun-, ATF2-, and TCF-controlled genes. (PMID:25576487)
- The TRPM3 activity is rapidly and reversibly inhibited by activation of phosphatases. (PMID:26123194)
- TRPM3 is a phosphoinositide-dependent ion channel. (PMID:26123195)
- Activation of TRPM3 channels increases the transcriptional activation potential of c-Fos in HEK293 cells. (PMID:26493679)
- Phosphoinositols regulate TRPM3. (PMID:26517445)
- This is the first study to examine the involvement of TRPM channel gene variations on the risk of SSc incidence. Our results suggest roles of TRPM3 and TRPM5 gene variants in the susceptibility to or clinical expression of Systemic sclerosis (PMID:26546534)
- rs10780946 TRPM3 polymorphism is associated with asthma-exacerbated respiratory disease susceptibility. (PMID:26891941)
- this study shows that differential expression of TRPM3 and Ca2+ flux between NK cell subtypes may provide evidence for their role in the pathomechanism involving NK cell cytotoxicity activity in chronic fatigue syndrome/myalgic encephalomyelitis (PMID:27727448)
- Genetic experiments revealed that the basic region leucine zipper proteins c-Jun and ATF2 and the ternary complex factor Elk-1 are essential to couple TRPM3 channel stimulation with the IL-8 gene. (PMID:28982580)
- Mutations of lysine residues in calmodulin binding site 2, strongly reduced calmodulin binding and TRPM3 activity indicating the importance of this domain for TRMP3-mediated calcium signaling. (PMID:29880196)
- In the three-stage genome-wide association study in South Korean population the signal in TRPM3 showed the most robust association with thyroid nodules, and those in MIBP/NKX2-1 also demonstrated a possible association. A rs4745021 variant at TRPM3 reached the genome-wide significance threshold in the meta-analysis. (PMID:30099483)
- TRPM3 activity is impaired in Chronic Fatigue Syndrome/ Myalgic Encephalomyelitis (CFS/ME) patients suggesting changes in intracellular Ca2+ concentration, which may impact NK cellular functions. This investigation further helps to understand the intracellular-mediated roles in NK cells and confirm the potential role of TRPM3 ion channels in the aetiology and pathomechanism of CFS/ME. (PMID:30134818)
- The fact that TRPM3 channel stimulation activates Elk-1 connects TRPM3 with the biological functions of Elk-1, including the regulation of proliferation, differentiation, survival, transcription, and cell migration. (PMID:30552902)
- Study confirmed a significant reduction in amplitude of TRPM3 currents after pregnenolone sulfate stimulation in isolated NK cells from another cohort of CFS/ME patients compared with healthy controls. (PMID:31014226)
- Our findings suggest that TRPM3 is a locus for ID and epilepsy, and should be included in genetic panels targeting these indications. (PMID:31278393)
- activation of Gs- and Gq-coupled G-protein-coupled receptors in recombinant cells and sensory neurons inhibits TRPM3 via Gbetagamma liberation (PMID:31451581)
- Naltrexone Restores Impaired Transient Receptor Potential Melastatin 3 Ion Channel Function in Natural Killer Cells From Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Patients. (PMID:31736966)
- Transient receptor potential melastatin 2 channels are overexpressed in myalgic encephalomyelitis/chronic fatigue syndrome patients. (PMID:31796045)
- Functional expression and pharmacological modulation of TRPM3 in human sensory neurons. (PMID:31985045)
- Disease-associated mutations in the human TRPM3 render the channel overactive via two distinct mechanisms. (PMID:32343227)
- Gain of channel function and modified gating properties in TRPM3 mutants causing intellectual disability and epilepsy. (PMID:32427099)
- Machine-Learned Association of Next-Generation Sequencing-Derived Variants in Thermosensitive Ion Channels Genes with Human Thermal Pain Sensitivity Phenotypes. (PMID:32575443)
- The structural basis for an on-off switch controlling Gbetagamma-mediated inhibition of TRPM3 channels. (PMID:33122432)
- TRPM3 channel activation inhibits contraction of the isolated human ureter via CGRP released from sensory nerves. (PMID:33417951)
Cross-species orthologs
10 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | trpm3 | ENSDARG00000039181 |
| mus_musculus | Trpm3 | ENSMUSG00000052387 |
| rattus_norvegicus | Trpm3 | ENSRNOG00000027770 |
| drosophila_melanogaster | Trpm | FBGN0265194 |
| caenorhabditis_elegans | WBGENE00000425 | |
| caenorhabditis_elegans | gon-2 | WBGENE00001651 |
| caenorhabditis_elegans | WBGENE00004149 | |
| caenorhabditis_elegans | WBGENE00020972 | |
| caenorhabditis_elegans | WBGENE00021404 | |
| caenorhabditis_elegans | WBGENE00021408 |
Paralogs (7): TRPM5 (ENSG00000070985), TRPM7 (ENSG00000092439), TRPM6 (ENSG00000119121), TRPM4 (ENSG00000130529), TRPM1 (ENSG00000134160), TRPM2 (ENSG00000142185), TRPM8 (ENSG00000144481)
Protein
Protein identifiers
Transient receptor potential cation channel subfamily M member 3 — Q9HCF6 (reviewed: Q9HCF6)
Alternative names: Long transient receptor potential channel 3, Melastatin-2
All UniProt accessions (21): Q9HCF6, A0A7I2V4C9, A0A7I2V4E8, A0A994J4I2, A0A994J4R7, A0A994J557, A0A994J563, A0A994J743, A0A994J747, A0A994J7I1, A0AA34QVQ9, A0AAQ5BIH5, A2A3F3, A2A3F4, A2A3F7, E9PBI7, G5E9G1, H0Y3D4, H7BYP1, Q4VXD4, Q504Y1
UniProt curated annotations — full annotation on UniProt →
Function. Constitutively active, non-selective divalent cation-conducting channel that is permeable to Ca(2+), Mn(2+), and Mg(2+), with a high permeability for Ca(2+). However, can be enhanced by increasing temperature and by ligands, including the endogenous neurosteroid pregnenolone sulfate and sphingosine-1 and suppressed by intracellular Mg(2+). Implicated in a variety of cellular processes, including insulin/peptide secretion, vascular constriction and dilation, noxious heat sensing, inflammatory and spontaneous pain sensitivity. In neurons of the dorsal root ganglia, functions as thermosensitive channel for the detection of noxious heat and spontaneous pain. Suggested to function as an ionotropic steroid receptor in beta-cell, indeed pregnenolone sulfate leads to Ca(2+) influx and enhanced insulin secretion. Mediates Zn(2+) uptake into the lumen of pancreatic beta cell secretory granules, thereby regulating insulin secretion. Forms heteromultimeric ion channels with TRPM1 which are permeable for Ca(2+) and Zn(2+) ions. Exists as multiple splice variants which differ significantly in their biophysical properties.
Subunit / interactions. Homotetramer. Interacts with TRPM1; the interaction results in the formation of a heteromultimeric cation channel complex that are functionally different from the homomeric channels.
Subcellular location. Cell membrane.
Tissue specificity. Expressed primarily in the kidney and, at lower levels, in brain, testis, ovary, pancreas and spinal cord. Expression in the brain and kidney was determined at protein level. In the kidney, expressed predominantly in the collecting tubular epithelium in the medulla, medullary rays, and periglomerular regions; in the brain, highest levels are found in the cerebellum, choroid plexus, the locus coeruleus, the posterior thalamus and the substantia nigra. Down-regulated in renal tumors compared to normal kidney. Expressed in the lens.
Disease relevance. Neurodevelopmental disorder with hypotonia, dysmorphic facies, and skeletal anomalies, with or without seizures (NEDFSS) [MIM:620224] An autosomal dominant disorder characterized by global developmental delay, moderate to severely impaired intellectual development, poor or absent speech, congenital hypotonia, dysmorphic facial features, exotropia, and musculoskeletal issues such as hip dysplasia, hip dislocation and scoliosis. About half of patients develop various types of seizures. The disease is caused by variants affecting the gene represented in this entry. Cataract 50 with or without glaucoma (CTRCT50) [MIM:620253] A form of cataract, an opacification of the crystalline lens of the eye that frequently results in visual impairment or blindness. Opacities vary in morphology, are often confined to a portion of the lens, and may be static or progressive. In general, the more posteriorly located and dense an opacity, the greater the impact on visual function. CTRCT50 is an autosomal dominant form characterized by early onset. Affected individuals may also exhibit high-tension glaucoma and variable anterior segment defects. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Activated by the neurosteroid pregnelonone sulfate (PregS); PregS activates the channel by shifting its current-voltage activation curve toward more negative membrane potentials and also potentiates temperature-induced activation. Activated by sphingosine. Activated by heat. Intracellular Ca(2+) inhibits TRPM3 probably via interaction with Ca(2+)/calmodulin. Intracellular Mg(2+) inhibits TRPM3 activity. Both intracellular and extracellular protons block TRPM3 through probable binding sites in the pore region. Positively regulated by phosphoinositide phosphoinositol 4,5-biphosphate (PI(4,5)P2). Strongly inhibited by activation of G(i)-coupled receptors via direct binding with G-betagamma-subunits of heterotrimeric G-proteins.
Similarity. Belongs to the transient receptor (TC 1.A.4) family. LTrpC subfamily. TRPM3 sub-subfamily.
Isoforms (11)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9HCF6-1 | 1, TRPM3f | yes |
| Q9HCF6-2 | 2, TRPM3a | |
| Q9HCF6-3 | 3, TRPM3b | |
| Q9HCF6-4 | 4, TRPM3d | |
| Q9HCF6-5 | 5, TRPM3e | |
| Q9HCF6-6 | 6, TRPM3c | |
| Q9HCF6-7 | 7 | |
| Q9HCF6-8 | 8 | |
| Q9HCF6-10 | 10 | |
| Q9HCF6-11 | 11 | |
| Q9HCF6-12 | 12 |
RefSeq proteins (23): NP_001007471, NP_001007472, NP_001353070, NP_001353071, NP_001353072, NP_001353073, NP_001353074, NP_001353075, NP_001353076, NP_001353077, NP_001353078, NP_001353079, NP_001353080, NP_001353081, NP_001353082, NP_001353083, NP_066003, NP_079247, NP_996827, NP_996828, NP_996829, NP_996830, NP_996831 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005821 | Ion_trans_dom | Domain |
| IPR032415 | TRPM_tetra | Domain |
| IPR037162 | TRPM_tetra_sf | Homologous_superfamily |
| IPR041491 | TRPM_SLOG | Domain |
| IPR050927 | TRPM | Family |
| IPR057366 | TRPM-like | Domain |
Pfam: PF00520, PF16519, PF18139, PF25508
Catalyzed reactions (Rhea), 4 shown:
- Mn(2+)(in) = Mn(2+)(out) (RHEA:28699)
- Zn(2+)(in) = Zn(2+)(out) (RHEA:29351)
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
- Mg(2+)(in) = Mg(2+)(out) (RHEA:29827)
UniProt features (54 total): splice variant 10, sequence variant 8, topological domain 7, region of interest 7, transmembrane region 6, compositionally biased region 4, sequence conflict 4, binding site 3, mutagenesis site 3, chain 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9J84 | ELECTRON MICROSCOPY | 4.21 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9HCF6-F1 | 64.70 | 0.15 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 796; 1017; 1018
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 1084 | enhances ph sensitivity. |
| 1087 | enhances ph sensitivity. |
| 1098 | less sensitivity toward protons. |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-3295583 | TRP channels |
MSigDB gene sets: 311 (showing top):
GOBP_PROTEIN_HOMOTETRAMERIZATION, GOBP_TRANSITION_METAL_ION_TRANSPORT, FOXO4_01, GOBP_MONOATOMIC_CATION_TRANSPORT, IRF7_01, GATA3_01, PU1_Q6, AACTTT_UNKNOWN, GOBP_PROTEIN_HOMOOLIGOMERIZATION, ZHANG_BREAST_CANCER_PROGENITORS_UP, IK3_01, GOBP_CALCIUM_ION_TRANSMEMBRANE_TRANSPORT, GOBP_PROTEIN_TETRAMERIZATION, GOBP_TRANSMEMBRANE_TRANSPORT, TGGAAA_NFAT_Q4_01
GO Biological Process (10): monoatomic cation transport (GO:0006812), calcium ion transport (GO:0006816), protein homotetramerization (GO:0051289), calcium ion transmembrane transport (GO:0070588), zinc ion transmembrane transport (GO:0071577), monoatomic cation transmembrane transport (GO:0098655), monoatomic ion transport (GO:0006811), monoatomic ion transmembrane transport (GO:0034220), protein tetramerization (GO:0051262), transmembrane transport (GO:0055085)
GO Molecular Function (7): monoatomic cation channel activity (GO:0005261), calcium channel activity (GO:0005262), calmodulin binding (GO:0005516), phosphatidylinositol-4,5-bisphosphate binding (GO:0005546), G-protein beta/gamma-subunit complex binding (GO:0031683), monoatomic ion channel activity (GO:0005216), metal ion transmembrane transporter activity (GO:0046873)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Stimuli-sensing channels | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| monoatomic ion transport | 2 |
| metal ion transport | 2 |
| monoatomic cation transmembrane transport | 2 |
| transport | 2 |
| monoatomic cation transmembrane transporter activity | 2 |
| protein homooligomerization | 1 |
| protein tetramerization | 1 |
| calcium ion transport | 1 |
| zinc ion transport | 1 |
| monoatomic cation transport | 1 |
| monoatomic ion transmembrane transport | 1 |
| transmembrane transport | 1 |
| protein complex oligomerization | 1 |
| cellular process | 1 |
| monoatomic ion channel activity | 1 |
| monoatomic cation channel activity | 1 |
| calcium ion transmembrane transporter activity | 1 |
| protein binding | 1 |
| phosphatidylinositol phosphate binding | 1 |
| phosphatidylinositol bisphosphate binding | 1 |
| protein-containing complex binding | 1 |
| monoatomic ion transmembrane transporter activity | 1 |
| channel activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
1132 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| TRPM3 | TRPV2 | Q9Y5S1 | 822 |
| TRPM3 | TRPA1 | O75762 | 813 |
| TRPM3 | TRPV1 | Q8NER1 | 792 |
| TRPM3 | TRPV3 | Q8NET8 | 784 |
| TRPM3 | TRPV4 | Q9HBA0 | 784 |
| TRPM3 | PKD2 | Q13563 | 750 |
| TRPM3 | TRPC1 | P48995 | 716 |
| TRPM3 | TJP2 | Q9UDY2 | 684 |
| TRPM3 | KLF9 | Q13886 | 667 |
| TRPM3 | MCOLN1 | Q9GZU1 | 622 |
| TRPM3 | TRPC6 | Q9Y210 | 599 |
| TRPM3 | CALM1 | P02593 | 568 |
| TRPM3 | PKD2L1 | Q9P0L9 | 564 |
| TRPM3 | ANK1 | P16157 | 563 |
| TRPM3 | S100A1 | P23297 | 534 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PHC1 | CBX4 | psi-mi:“MI:0914”(association) | 0.790 |
| OSM | IL6ST | psi-mi:“MI:0914”(association) | 0.760 |
| CHCHD10 | CLPX | psi-mi:“MI:0914”(association) | 0.640 |
| NHLH2 | AP3B1 | psi-mi:“MI:0914”(association) | 0.530 |
| PRR20E | SIAH2 | psi-mi:“MI:0914”(association) | 0.530 |
| H1-7 | psi-mi:“MI:0914”(association) | 0.350 | |
| LRP3 | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| SENP3 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| TFPT | KRBA1 | psi-mi:“MI:0914”(association) | 0.350 |
| CXCL14 | DCTN6 | psi-mi:“MI:0914”(association) | 0.350 |
| ZRSR2 | U2SURP | psi-mi:“MI:0914”(association) | 0.350 |
| DDX54 | SYNCRIP | psi-mi:“MI:0914”(association) | 0.350 |
| AKAP17A | NOS1AP | psi-mi:“MI:0914”(association) | 0.350 |
| GNLY | PRKCI | psi-mi:“MI:0914”(association) | 0.350 |
| DDX54 | MYO1F | psi-mi:“MI:0914”(association) | 0.350 |
| BHLHA15 | RNASEH1 | psi-mi:“MI:0914”(association) | 0.350 |
| CLEC3A | MACROH2A1 | psi-mi:“MI:0914”(association) | 0.350 |
| TNFRSF13B | CYBA | psi-mi:“MI:0914”(association) | 0.350 |
| DDX54 | CLPX | psi-mi:“MI:0914”(association) | 0.350 |
| ESRRG | TTR | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (30): TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS), TRPM3 (Affinity Capture-MS)
ESM2 similar proteins: A0A0R4IMY7, A0JPA0, A2AP18, A8DYE2, J9SQF3, O00329, O35904, O75038, P0C1Q3, P0C588, P19687, P33402, P48736, P97557, Q02108, Q09M05, Q148L1, Q1LWG4, Q2TV84, Q2WEA5, Q3USB7, Q4ZHS0, Q502J0, Q5EBA1, Q60565, Q62688, Q69ZF7, Q6P4Q7, Q6PA06, Q7L5N7, Q7TN37, Q7Z2W7, Q7Z4N2, Q80YD1, Q8BTI9, Q8BYI6, Q8BZN2, Q8CIR4, Q8NHH9, Q8R455
Diamond homologs: A0A0R4IMY7, A7T1N0, A8DYE2, E9PTA2, J9SQF3, O94759, Q2TV84, Q2WEA5, Q5XIG0, Q7TN37, Q7Z2W7, Q7Z4N2, Q8BVU5, Q8R455, Q8R4D5, Q8TD43, Q91YD4, Q9BW91, Q9ESQ5, Q9HCF6, Q9JJH7, Q9NZQ8, S5UH55, Q09297, Q8CIR4, Q923J1, Q925B3, Q96QT4, Q9BX84, Q93971, O00418, O01991, P42527, P90648, Q54SF9, Q6B9X6, Q8MY12, Q54DK4, Q86TB3, Q91ZB0
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
288 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 4 |
| Uncertain significance | 221 |
| Likely benign | 24 |
| Benign | 16 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1516729 | NM_001366145.2(TRPM3):c.3428G>A (p.Arg1143Lys) | Likely pathogenic |
| 2412979 | NM_001366145.2(TRPM3):c.3431A>G (p.Tyr1144Cys) | Likely pathogenic |
| 2580894 | NM_001366145.2(TRPM3):c.3397T>C (p.Ser1133Pro) | Likely pathogenic |
| 4077407 | NM_001366145.2(TRPM3):c.1840-25_1852del | Likely pathogenic |
SpliceAI
6379 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:70537401:CCACC:C | acceptor_gain | 1.0000 |
| 9:70537402:CACC:C | acceptor_gain | 1.0000 |
| 9:70537402:CACCC:C | acceptor_gain | 1.0000 |
| 9:70537404:CC:C | acceptor_gain | 1.0000 |
| 9:70537404:CCCT:C | acceptor_loss | 1.0000 |
| 9:70537405:CC:C | acceptor_gain | 1.0000 |
| 9:70537405:CCTG:C | acceptor_loss | 1.0000 |
| 9:70537406:C:CC | acceptor_gain | 1.0000 |
| 9:70537406:C:CG | acceptor_loss | 1.0000 |
| 9:70537407:T:C | acceptor_loss | 1.0000 |
| 9:70549537:CACA:C | donor_loss | 1.0000 |
| 9:70549538:ACACC:A | donor_loss | 1.0000 |
| 9:70549539:CACCT:C | donor_loss | 1.0000 |
| 9:70549540:ACCT:A | donor_loss | 1.0000 |
| 9:70549541:CCTTT:C | donor_gain | 1.0000 |
| 9:70549551:G:C | donor_gain | 1.0000 |
| 9:70549560:AT:A | donor_gain | 1.0000 |
| 9:70549670:GAGTT:G | acceptor_gain | 1.0000 |
| 9:70549671:AGTT:A | acceptor_gain | 1.0000 |
| 9:70549672:GTT:G | acceptor_gain | 1.0000 |
| 9:70549673:TT:T | acceptor_gain | 1.0000 |
| 9:70549673:TTC:T | acceptor_loss | 1.0000 |
| 9:70549674:TCTG:T | acceptor_loss | 1.0000 |
| 9:70549675:C:CC | acceptor_gain | 1.0000 |
| 9:70549675:C:CG | acceptor_loss | 1.0000 |
| 9:70549677:G:C | acceptor_gain | 1.0000 |
| 9:70552305:T:TA | donor_gain | 1.0000 |
| 9:70552842:A:AC | donor_gain | 1.0000 |
| 9:70552843:C:CC | donor_gain | 1.0000 |
| 9:70552843:CT:C | donor_gain | 1.0000 |
AlphaMissense
11420 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000003962 (9:70933707 T>G), RS1000007117 (9:71110524 T>C), RS1000015646 (9:70697684 T>C), RS1000020072 (9:71380843 A>G), RS1000020852 (9:70565022 C>A,T), RS1000021828 (9:71283096 C>T), RS1000022517 (9:70651845 A>C), RS1000022830 (9:70872503 G>T), RS1000029266 (9:71396737 C>A), RS1000033783 (9:70670828 C>T), RS1000035167 (9:70702121 G>A,T), RS1000036384 (9:70933462 A>T), RS1000041967 (9:70785347 T>G), RS1000046705 (9:71165102 C>A,G,T), RS1000050630 (9:70924028 C>T)
Disease associations
OMIM: gene MIM:608961 | disease phenotypes: MIM:620224, MIM:620253, MIM:253250, MIM:612292
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| neurodevelopmental disorder with hypotonia, dysmorphic facies, and skeletal anomalies, with or without seizures | Definitive | Autosomal dominant |
| cataract 50 with or without glaucoma | Strong | Autosomal dominant |
| autosomal dominant non-syndromic intellectual disability | Supportive | Autosomal dominant |
| intellectual disability | Limited | Autosomal dominant |
| schizophrenia | Limited | Autosomal dominant |
| cataract-glaucoma syndrome | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| syndromic complex neurodevelopmental disorder | Definitive | AD |
| cataract 50 with or without glaucoma | Moderate | AD |
Mondo (10): neurodevelopmental disorder with hypotonia, dysmorphic facies, and skeletal anomalies, with or without seizures (MONDO:0859365), prostate cancer (MONDO:0008315), intellectual disability (MONDO:0001071), neurodevelopmental disorder (MONDO:0700092), cataract 50 with or without glaucoma (MONDO:0859382), mulibrey nanism (MONDO:0009664), Birk-Barel syndrome (MONDO:0012856), autosomal dominant non-syndromic intellectual disability (MONDO:0015802), schizophrenia (MONDO:0005090), cataract-glaucoma syndrome (MONDO:0015567)
Orphanet (5): Familial prostate cancer (Orphanet:1331), Birk-Barel syndrome (Orphanet:166108), Autosomal dominant non-syndromic intellectual disability (Orphanet:178469), Mulibrey nanism (Orphanet:2576), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
67 total (30 of 67 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000028 | Cryptorchidism |
| HP:0000054 | Micropenis |
| HP:0000154 | Wide mouth |
| HP:0000218 | High palate |
| HP:0000262 | Turricephaly |
| HP:0000294 | Low anterior hairline |
| HP:0000322 | Short philtrum |
| HP:0000324 | Facial asymmetry |
| HP:0000337 | Broad forehead |
| HP:0000347 | Micrognathia |
| HP:0000414 | Bulbous nose |
| HP:0000463 | Anteverted nares |
| HP:0000470 | Short neck |
| HP:0000473 | Torticollis |
| HP:0000486 | Strabismus |
| HP:0000490 | Deeply set eye |
| HP:0000501 | Glaucoma |
| HP:0000506 | Telecanthus |
| HP:0000508 | Ptosis |
| HP:0000518 | Cataract |
| HP:0000541 | Retinal detachment |
| HP:0000577 | Exotropia |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000729 | Autistic behavior |
| HP:0000750 | Delayed speech and language development |
| HP:0000767 | Pectus excavatum |
| HP:0000996 | Facial capillary hemangioma |
| HP:0001182 | Tapered finger |
| HP:0001249 | Intellectual disability |
GWAS associations
28 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000785_8 | Longevity | 1.000000e-06 |
| GCST001875_3 | Pubertal anthropometrics | 8.000000e-07 |
| GCST002868_17 | Response to serotonin reuptake inhibitors in major depressive disorder | 4.000000e-06 |
| GCST003219_27 | Advanced age-related macular degeneration | 3.000000e-08 |
| GCST003262_570 | Post bronchodilator FEV1 | 3.000000e-06 |
| GCST004068_44 | Venous thromboembolism adjusted for sickle cell variant rs77121243-T | 3.000000e-07 |
| GCST006069_67 | Time-dependent creatinine clearance change response to tenofovir treatment in HIV infection (time and treatment arm interaction) | 9.000000e-06 |
| GCST006387_1 | Thyroid nodules | 2.000000e-08 |
| GCST007576_147 | Chronotype | 1.000000e-08 |
| GCST008161_82 | Waist circumference adjusted for body mass index | 2.000000e-06 |
| GCST009391_637 | Metabolite levels | 1.000000e-07 |
| GCST010002_320 | Refractive error | 3.000000e-39 |
| GCST010320_1 | PR interval | 5.000000e-11 |
| GCST010321_15 | PR interval | 2.000000e-12 |
| GCST010577_7 | Crohn’s disease | 5.000000e-06 |
| GCST010796_3480 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-09 |
| GCST010796_3481 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010796_3482 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_3483 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-08 |
| GCST010796_3484 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_3485 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-09 |
| GCST010796_3486 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-09 |
| GCST010796_3487 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_3488 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010796_3489 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-08 |
| GCST010988_397 | Adult body size | 1.000000e-11 |
| GCST011494_46 | Daytime nap | 3.000000e-10 |
| GCST012299_13 | Schizophrenia, bipolar disorder or major depressive disorder x sex interaction (3df) | 9.000000e-06 |
EFO canonical traits (12, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005658 | response to selective serotonin reuptake inhibitor |
| EFO:1001492 | atrophic macular degeneration |
| EFO:0004314 | forced expiratory volume |
| EFO:0007934 | creatinine clearance measurement |
| EFO:1001436 | thyroid nodule |
| EFO:0008328 | chronotype measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0010504 | inositol measurement |
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
| EFO:0007828 | daytime rest measurement |
| EFO:0008343 | sex interaction measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D050336 | Mulibrey Nanism | C05.116.099.343.796; C16.320.240.875 |
| D065886 | Neurodevelopmental Disorders | F03.625 |
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
| C567357 | Birk-Barel Mental Retardation Dysmorphism Syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3559708 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2043144 | TRPM3 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: vgic — Transient Receptor Potential channels (TRP)
Most potent curated ligand interactions (17 total), top 17:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| isosakuranetin | Channel blocker | 7.3 | pIC50 |
| primidone | Channel blocker | 6.2 | pIC50 |
| CIM0216 | Activation | 6.1 | pEC50 |
| maprotiline | Channel blocker | 5.8 | pIC50 |
| clotrimazole | Agonist | 5.52 | pEC50 |
| naringenin | Channel blocker | 5.2 | pIC50 |
| diclofenac | Channel blocker | 5.2 | pIC50 |
| (S)-liquiritigenin | Channel blocker | 5.2 | pIC50 |
| sphingosine | Agonist | 4.9 | pEC50 |
| pregnenolone sulphate | Activator | 4.9 | pEC50 |
| dihydrosphingosine | Agonist | 4.7 | pEC50 |
| Gd3+ | Antagonist | 4.0 | pIC50 |
| 2-APB | Antagonist | 4.0 | pIC50 |
| La3+ | Antagonist | 4.0 | pIC50 |
| chloroform | Antagonist | 3.78 | pIC50 |
| halothane | Antagonist | 3.28 | pIC50 |
| Mg2+ | Antagonist | 2.0 | pIC50 |
CTD chemical–gene interactions
33 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, decreases expression, increases expression | 5 |
| methylmercuric chloride | decreases expression, increases expression | 3 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Aflatoxin B1 | increases methylation, decreases methylation | 2 |
| propionaldehyde | decreases expression | 1 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | increases expression | 1 |
| trichostatin A | decreases expression, increases expression | 1 |
| sodium arsenite | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Amphotericin B | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Carbamazepine | affects expression | 1 |
| Copper | affects cotreatment, decreases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Endosulfan | decreases expression | 1 |
| Methamphetamine | affects response to substance | 1 |
| Sarin | increases expression | 1 |
| Smoke | increases expression | 1 |
| Thimerosal | increases expression | 1 |
| Tretinoin | decreases expression | 1 |
| Zinc | increases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4411010 | Binding | Inhibition of TRPM3 channel (unknown origin) | Discovery of a Potent and Selective TRPC5 Inhibitor, Efficacious in a Focal Segmental Glomerulosclerosis Model. — ACS Med Chem Lett |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D9V0 | Ubigene HEK293 TRPM3 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
600 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
Related Atlas pages
- Associated diseases: intellectual disability, schizophrenia, cataract-glaucoma syndrome, neurodevelopmental disorder with hypotonia, dysmorphic facies, and skeletal anomalies, with or without seizures, cataract 50 with or without glaucoma, autosomal dominant non-syndromic intellectual disability, syndromic complex neurodevelopmental disorder
- Targeted by drugs: Chloroform, Clotrimazole, Diclofenac, Halothane, Magnesium, Maprotiline, Mefenamic Acid, Nifedipine, Pioglitazone, Primidone, Rosiglitazone, Troglitazone
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): age-related macular degeneration, autosomal dominant non-syndromic intellectual disability, Birk-Barel syndrome, cataract 50 with or without glaucoma, cataract-glaucoma syndrome, intellectual disability, mulibrey nanism, neurodevelopmental disorder with hypotonia, dysmorphic facies, and skeletal anomalies, with or without seizures, venous thromboembolism, wet macular degeneration