TSC22D1-AS1

Summary

TSC22D1-AS1 (TSC22D1 antisense RNA 1, HGNC:43684) is a long non-coding RNA gene on chromosome 13q14.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:43684
Approved symbol	TSC22D1-AS1
Name	TSC22D1 antisense RNA 1
Location	13q14.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000278156
Ensembl biotype	lncRNA
Entrez	641467
RNAcentral	URS000075B8E6 — lncRNA, 2857 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000426509, ENST00000616360, ENST00000617014, ENST00000656799, ENST00000715720, ENST00000762093, ENST00000762094, ENST00000762095, ENST00000762096, ENST00000762097, ENST00000762098, ENST00000762099, ENST00000762100, ENST00000762101, ENST00000762102, ENST00000762103, ENST00000762104

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426509 — 3 exons

Exon	Start	End
ENSE00001760910	44651812	44651868
ENSE00001803657	44700920	44701016
ENSE00004027692	44663895	44664035

Expression profiles

Bgee: expression breadth ubiquitous, 192 present calls, max score 84.41.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2740 / max 39.1494, expressed in 116 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134944	0.2740	116

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	84.41	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	81.07	gold quality
right coronary artery	UBERON:0001625	79.75	gold quality
gastrocnemius	UBERON:0001388	77.18	gold quality
secondary oocyte	CL:0000655	76.91	gold quality
middle temporal gyrus	UBERON:0002771	76.33	gold quality
muscle of leg	UBERON:0001383	76.32	gold quality
popliteal artery	UBERON:0002250	75.99	gold quality
endothelial cell	CL:0000115	75.94	silver quality
tibial artery	UBERON:0007610	75.94	gold quality
left coronary artery	UBERON:0001626	75.39	gold quality
nucleus accumbens	UBERON:0001882	75.36	gold quality
aorta	UBERON:0000947	75.35	gold quality
adenohypophysis	UBERON:0002196	75.21	gold quality
hindlimb stylopod muscle	UBERON:0004252	75.07	gold quality
ascending aorta	UBERON:0001496	74.79	gold quality
thoracic aorta	UBERON:0001515	74.78	gold quality
pituitary gland	UBERON:0000007	74.67	gold quality
right uterine tube	UBERON:0001302	74.56	gold quality
coronary artery	UBERON:0001621	74.55	gold quality
putamen	UBERON:0001874	74.55	gold quality
descending thoracic aorta	UBERON:0002345	74.54	gold quality
cortical plate	UBERON:0005343	74.52	gold quality
primary visual cortex	UBERON:0002436	74.08	gold quality
mucosa of stomach	UBERON:0001199	74.00	gold quality
caudate nucleus	UBERON:0001873	73.57	gold quality
Brodmann (1909) area 23	UBERON:0013554	73.39	gold quality
sural nerve	UBERON:0015488	72.64	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	72.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	72.31	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.