TSKU-AS1

Summary

TSKU-AS1 (TSKU antisense RNA 1, HGNC:55509) is a long non-coding RNA gene on chromosome 11q13.5.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55509
Approved symbol	TSKU-AS1
Name	TSKU antisense RNA 1
Location	11q13.5
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255100
Ensembl biotype	lncRNA
Entrez	101928837
RNAcentral	URS000075CE38 — lncRNA, 348 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000526585, ENST00000527778, ENST00000528075

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000526585 — 2 exons

Exon	Start	End
ENSE00004197923	76782212	76782856
ENSE00004197924	76782991	76783118

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 93.21.

FANTOM5 (CAGE): breadth broad, TPM avg 0.8284 / max 32.5324, expressed in 470 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
121411	0.8284	470

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.21	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.76	gold quality
buccal mucosa cell	CL:0002336	88.15	gold quality
calcaneal tendon	UBERON:0003701	87.46	gold quality
ectocervix	UBERON:0012249	82.32	gold quality
endocervix	UBERON:0000458	81.21	gold quality
sural nerve	UBERON:0015488	80.20	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	78.58	gold quality
right lobe of thyroid gland	UBERON:0001119	77.92	gold quality
uterine cervix	UBERON:0000002	77.45	gold quality
skin of abdomen	UBERON:0001416	77.12	gold quality
left lobe of thyroid gland	UBERON:0001120	76.87	gold quality
thyroid gland	UBERON:0002046	76.85	gold quality
mucosa of stomach	UBERON:0001199	76.51	gold quality
skin of leg	UBERON:0001511	76.26	gold quality
vagina	UBERON:0000996	76.18	gold quality
subcutaneous adipose tissue	UBERON:0002190	75.18	gold quality
zone of skin	UBERON:0000014	74.68	gold quality
body of uterus	UBERON:0009853	74.66	gold quality
tendon	UBERON:0000043	74.45	gold quality
esophagus mucosa	UBERON:0002469	74.37	gold quality
tibial nerve	UBERON:0001323	74.30	gold quality
left coronary artery	UBERON:0001626	74.28	gold quality
ganglionic eminence	UBERON:0004023	73.69	gold quality
rectum	UBERON:0001052	73.39	gold quality
left ovary	UBERON:0002119	73.13	gold quality
left uterine tube	UBERON:0001303	72.89	gold quality
descending thoracic aorta	UBERON:0002345	72.79	gold quality
prostate gland	UBERON:0002367	72.78	gold quality
coronary artery	UBERON:0001621	72.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.